Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0363900 |
| Transcript ID | LotjaGi6g1v0363900.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67542215..67548757) extracted from Lotus japonicus Gifu genome v1.2.
GCTGAAGTTGTTGATGTGTATAAGAACAAACCATTTAAATACATAAAATGAGCAGTAATGATATGTTTATACACTTGAAG GATAAAAATCCGAACAAAGGATAAGATAAACAGGTTCCGTAAAATCCTAGTAATTATAATGTTTGGGTTAACCCAAAGCA AGGGAAAAATCCAGGGACTAGTTCATAAAAACAAAATTCTGAAGCCCTATTCTTTCACTTGCTCGATTGTTCATTGCTCA CGCACGGCTTCACCACTTCCTTCACGCACGGCTTCACCTCTGTTCACCATTGTTCAATTGCTCCTTCCACGAAACCACCA AGCAGAAGCAGGTAAACTTCTTAATCAATTGTGACTTTATCTCTGTCCTCTGACTCTGATTCTCTGAATCTCTGTGAATC GATTGTGTTGGCGTGGGTGGGTGAGGGTCTGGAACTGTATCTCTGTGAATCGATTGTGCTGGCGTGGGTGGGTGAGACCG TGAGCCTGAGAGTGTGAGACGGTGAGGCAGTGGCGGTGGGTGAGGTGAAGAGGGTTGTGTCACTCAGTGCTGTGGCCTGT GGGTGAGGGTGAGTGAAGAAGTGAGACTGTGAGAGACAGAGAGAGTGTGGGCTATGTGGCCTGTGGGTGGGCGGTTTGTC AATTTCATTGTGAGATTGAGATTTGAGAAGAAGCACGTGGTCACAGAGTCAGAATGTGAGATTGAGAAGCATGTAGTCAT TGTGGTGAAAGAGTGAGTGAGAGAGACAGAGTGAGGTTTTGGATTCCAATTTTGAATCTGATGATGGATTCCACCCTCTG ATGCTTTGCGTTTTTTTAAGCTATGATCCTCATGAAAGTTATGATCTATTCTTGATTCACATCATCCACAAACTCTCCAG TTTTTTATTTCAATTTCGCACTCGTTTTCATCCATTATTCTGGTGGCTTTCCATTTTATTATACTGATATGTTATATCAT GTTGAAGGATTTTTCATACACTTGGATGCAACATTCATAGCCCAGTGGCATTTTTTAGCAAGGAATTGCCAGCTAGTTGC GACGTGTTATAAGGTGGTGGATTCTAACTGAAAGTTAATTCCTTAGTTTAGTATTTGATTTTATTTAATATATATACCAT TTTGGTCATTACACTATACACTAACTTACAATTTTAGTCAAAGTTACTCATCCAAACGTAAATCACGTCTTTGTCAGATT CAATTTTATCCGATCCAAATCTCCTAACTGATCCAAACATATCCAATGTTGCCCAGGCTCCACAAAATTTCTGGATCCGC CACTGCCTACGACAACATCAACATGCATGGCATCACAAACACCACTCTTGCATTGTTGAACTCGTGCAAAAACACCTCTG ATATTTGTCAACTTCATGCTCGCATGGTTAAGACCGCTCTCACCAACGTTCCTTTCACTCTCAGCAAGCTTCTCTATGCT TCCATTCTCGACATGGACTATGCAGCTTCCATTTTCAGCCACATTCAAACCCCCAATCTTTTCATGTTCAACACAATGCT CAGAGGCTATTCAATCAGTCATTACCCCAATAAAGCTTTGCCCATTTTCAATCAACTCAGGAATCAGAGGAGTGAGCTTG ACCGGTTCTCTTTCGTTGCGGTTCTCAAAGCATGTGGTCGAGGTTCTCATGTTAGTTTTGGCCAAGGGGTCCATGGGATT GCAGTGAGGTCTGGGAATGGGATGTTTGTTGATGTTAAGAATACCCTTTTGCGTTTTTATTGTGTTTGGAGAAGAATTGA AGATGCACATAAGCTGTTTGATGAGTTTCCTGAAGGAAATGACTTAGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTG TTGTTTCTCAGCCTAATTTGGTTTTTGATTTGTTTAGGAAGATGTGTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGTC GTGATCCTTTTGCCAGCAGCCGGTGATAGAGGGGACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTGTATCCAAATTGG ACTTAGTTCTCATTTGAATGTTCTTACTGCATTGATAGATATGTATGCGAAAATTGGTCGTGTGCATTGGGGGCGTAAGA TTTTCGATGGTCTTGTTGAAAAGGATGTTGTCTTATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTTTGGTAGGA GAAGCGGTGTATTTATTACAGCAAATGAGAATTCAAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGC TTGCCCTGCATCCGAATCTATACATCTAGTTCGTCACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAG TTCTGGGAACAGCTCTTGTTGATATGTGTGCTAAATGTGGCTTTCTAGATGAGGCTATGGGCATATTTGAGAGGATGGAA GATAAAGATGTGAAATCTTGGACAGCCATGATTTCAGGTCATGGAGTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTT CAATAGGATGGAGAACGAGGGGTTTAAACCAAATGGAGTCACCTTTTTGGCAATTCTGACTGCTTGTAGTCATGGAGGAC TTGTAATTGAGGGGATGTATATTTTTAAGCACATGGTTCAGGAATTTGGCTTTTCGCCACATATTGAGCATTATGGATGT CTTATTGATCTCTTGGGTCGAGCAGGGATGCTACATGAAGCATATAAACTAATCAAGAGCTTGCCAATTAAGGGTGATGC TACTGCATGGCGTACACTGCTTTCTGCTTGCCGAGTCTATGGAGATGTTAAATTGGCGGAGTATGTAAAAGATGTCATAA ACAACATTTATGCAGCGCATCCTACAGATTCCCTCCTCATTTCTAGCACTTATGCAGCTGCTGGAAGAATCTCAGATCTT ATACCAATGCAAGAAATAAAACAAACAAATGTTGTAGTAGAAAATTATGGGTTACATGAAAAAAAGGGAGGAAGTACAGT AAAGGAAGCTGGACTCAGCTGGGTTGTAATTGATAATTAGGGATGAGAATACTACAGGTTCACCAACAAGCATTAACTCT ATTACACAAAATGGTGGCCTCTATTGTGCACGAAAACTGCAAATGCAAGGTCTGGTTAACTGTAGGTTGACTTGTATTAG TCCTTTGTTCAATTGCTTTTTCTCCCACCTTGCATCTTCCCCTGATTACCATCCTCATTCGTCCCGATGTAGCAGCTCTC TCTCCCCCACCTTGCATCTTCCCCTGATTACCATCCTCATTCGTCCCCCCTACTTCACCGAGACTCCGCTGTACCTATTG CTCCAGCTCACTCTGCACCGATGTAGGAGGTTCGACGTCCCACCGGCCAGCTGTTGCCGTGCTGTTGCATCGAAGGCCGA TCCGTAGGTACCTTCAAGCCACCAAAACCAGCTGGAAGTTCTTCTTTACTGGTTGTTTGCCTACCCCCTATCTCCTCCAT TTTCCTTTACAGCTTTGTTCTGATCTGAGTTGATTTGATGTACCCATATTTTTGCTTATAAATTGATCCCTTCTCTCCCC TGTCTTGAACTTTCAGATCCCTCTACCCAGAGTCCGTTTGTTTGGGGTCGGTAAGAGAGCAACATTGGTGTCAAGTTCTG GTGGAGATGCGGTTCAAGGTTTCTGCGATGGCTTCGGCTGGGGTTGATTTTGAGTTTGTTGGGTAAAAGAATCCAATTTC TGCATTTCCTTTCTTATTCCTAGCATTATCATGTTGCTGTATTTTTACTTACACATTAGCACCTTTGACTGCAGTATCTC TTATCTATTACGGCTTACAGCACTATCTATCATTGGCTGGCTCACTTGTATTGATCCCATTAGTCATGGTACCGGTCATG GGTGGAACTGATGTAAGCATATACTGTTATAGTGTTATGTACTGTTTACTCTTAAGAAAATTTAGTTTTTCATATTTGAA TCTACATTTACACTAACCACTGATGGCAGACGGATACTGCTACTGTAATTCCTACAATGCTGCTCTGTTTTGACTTAAAA CATGATGATGAGTATGATATTGTGTGTTGCTATGTATTTCAGGGAAGCCAAGAAGAAGTTGCAGACACAGAACAAGCTGA AAATTGGTTCTCTTTGGCTTCTGCACAACGAATATGTGGTGTGTATTCTATATAGTTTTAGTTTTATCAACTCATTTACC TCCTGTTGTGTGTCCATTATACTCCCTTCTTTTCCTGATTGTGATTGTGATTGAGATAAGATTGGTTGCTGTGTTACTAA GGGATATGTCTTTTAGACTTTATAAGAAATCAGCTCTTGAAGATATCATTAGTTGCTGTGTTACCAAGGGATATGTTTTT CAAATGGAGATGATAGTACGAGCATCCAGAAAAGTCTTTCAAGTCATATGTTTAGTATGTTTGGGTTTACCTTCATTTAT CATATCCTACTTCATGGCTGATTTGATTTGATAATATCTATATGTTTAGTATGTTTGAGTTTACTTATTTGTTTCAAAGT AGCTTATAATCAAAATCATATTGAGAAAGTTTTTGTCAAAACCAAGTGTTTATTATAATTATGCTGTTTACATTCAAAAG AAATAATATCAAAATAAACTTGATTTTCTGTTAGACTTATGGAGGGCTCTTAGGGTATTCTTTATCTGTGAATGTTAGAC AGTTCAGCCAATTCTTGGCTACCTTATTCAGTTGAGTTAATAGTGGCTTGGTCATTTACCAATTAATGGGGTTTATCATC CTTAGATTTCCTTACAACTATACATCTACCAAGTGCCATTATGCACTGTTTCAAGCAAAGATGCAAAATGCTAGAAGTGA TTTTTTTAAGGATGATAACACCTTACTTTCTATTTCTATTGCTTGAACTGTCAGGTATAATGTTGTCTTGACAGGTATAA TGATGTGAATGAGGGTTTGTTCTGTGGGTTGGTCCTTATTGTTTGTTTTCACTTTTCATTTTAATAGTTTTGTTTTAGAA TAAAATGCTGAATAACTTACTCTTTGGCATTGTTTCTTTCCTTGGTTGTCAAATCTGCTGGTATTCAGTGCGCTAAACAC AAGTTCAGATGATCTTCCATTATGGGGTATGCCTATTAATGCCTCATTCATTCTGGAATACAAAATCACACAAGTTCAGA TGCTATTGGAAAAGATACTTAAAAGAGTTTGAATTGCTTCCAAATGGCCCAGATGAAGGGGGTTGGGTTTTCACTCTTTG AATGGTAGTTCATTACTTCATTATCAGACACAATCTTAATTCATCAGATACATCACTCTGAGGATCTTTTTAGGCGTATA AAATAACGTTGGGAATCTAAATATAAACTATCTGCATTTTGAAATACAATTATGTCAAAAACCAATGTTAGTAGTTGAAA ACGTACATTAACTGTTTACAGATCTCTGCTTTGACATTTTTTGCAACCAAATGTGGATTTGCTGTTCTCTGAACACATTA AACCTTGGCTCTTATTCTGTTAGGTTGGGTGTATTCTTAGTTTCCATATTAAATCCTTCTACTTTTAATCTAATAATAAG TTTGTGATGGTGATTTTGACCAAGCATGTGTATCTTTTACTGGGAATATACAGTTGTTGTTGCTAGAGGGGGAATGGAGA CCCTCAGACCTGCTTGGCAGCGTGTGTATATGACCAGAGCTTCTGCATAAAGAGATTCTCTTAAAAGTTTTATAGAAGGG TACCAAGAGGGTGTTCAGCGAGTAATGGAGAAGAAAGAAGATTCCAAAACTCAAGGACATGTCAGTATACCAAAAAGAGT CAACTTGAACTTGCTTGTAGGAGGCAGTGTCATACCTTCCATTTAGACTCAAGCATGCAACTTTGCAAAAATTAGTGTCA ATCCCCTAGAATTAAAGGGTGTTAATGTACATTTCACTGAACAGATATAGTCGAATATTCCAAAATGGTGTACTTGGGCT ACTAAGCATCTAATGGTAGTACTGAATTTTGTTTGTGCAATTCGTTTTTTACTTAGTTTTAAATCTTGTGTGCTTTTCAG TGATATTAGTGGTGTGTTTGTTCAGCAAATGGTAGCAATACATGTTGATGACATGCTTCTTTAATAACTATAGCAAAGTG CATATAATATATTTGGATTCCCCCCTAAAGGTGCATAATTCCCTATATTTCATTGATGAAAGTTCATAATTATATGTTTC TCTTAGAGATACATAAATGCACCTGCACAAAGATGATCAGGTGAGCTTTGTATATGATTGTTTCTGGATTAGGCTGTATT GGCTAATGCTAATTACTGTAGGTTGTGTTATCATTTCTTATAGCCAGAATTATTTTGGCATTATACAAGATTTTCTGGCT ACGAGTGGGCTGAATTATCAGCCTGAGACTGTAAGGTAGCCCTTTACCATGGGATTCCATCTTTTGCTTTGGAAACATGT ATATGGACAAATTAGGTCTTGAGATGCCAGGTTGAATAGTTATGGTTTCATTGTGGATATTGAGATGGCTGAAGTGACTT GGATAATGTGAAATATAAGACACAAATTAAGGCCCACATAATATTATTGACTCCAGCCTTTGC
CDS sequence (LotjaGi6g1v0363900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGGCATCACAAACACCACTCTTGCATTGTTGAACTCGTGCAAAAACACCTCTGATATTTGTCAACTTCATGCTCG CATGGTTAAGACCGCTCTCACCAACGTTCCTTTCACTCTCAGCAAGCTTCTCTATGCTTCCATTCTCGACATGGACTATG CAGCTTCCATTTTCAGCCACATTCAAACCCCCAATCTTTTCATGTTCAACACAATGCTCAGAGGCTATTCAATCAGTCAT TACCCCAATAAAGCTTTGCCCATTTTCAATCAACTCAGGAATCAGAGGAGTGAGCTTGACCGGTTCTCTTTCGTTGCGGT TCTCAAAGCATGTGGTCGAGGTTCTCATGTTAGTTTTGGCCAAGGGGTCCATGGGATTGCAGTGAGGTCTGGGAATGGGA TGTTTGTTGATGTTAAGAATACCCTTTTGCGTTTTTATTGTGTTTGGAGAAGAATTGAAGATGCACATAAGCTGTTTGAT GAGTTTCCTGAAGGAAATGACTTAGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTGTTGTTTCTCAGCCTAATTTGGT TTTTGATTTGTTTAGGAAGATGTGTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGTCGTGATCCTTTTGCCAGCAGCCG GTGATAGAGGGGACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTGTATCCAAATTGGACTTAGTTCTCATTTGAATGTT CTTACTGCATTGATAGATATGTATGCGAAAATTGGTCGTGTGCATTGGGGGCGTAAGATTTTCGATGGTCTTGTTGAAAA GGATGTTGTCTTATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTTTGGTAGGAGAAGCGGTGTATTTATTACAGC AAATGAGAATTCAAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGCTTGCCCTGCATCCGAATCTATA CATCTAGTTCGTCACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAGTTCTGGGAACAGCTCTTGTTGA TATGTGTGCTAAATGTGGCTTTCTAGATGAGGCTATGGGCATATTTGAGAGGATGGAAGATAAAGATGTGAAATCTTGGA CAGCCATGATTTCAGGTCATGGAGTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTTCAATAGGATGGAGAACGAGGGG TTTAAACCAAATGGAGTCACCTTTTTGGCAATTCTGACTGCTTGTAGTCATGGAGGACTTGTAATTGAGGGGATGTATAT TTTTAAGCACATGGTTCAGGAATTTGGCTTTTCGCCACATATTGAGCATTATGGATGTCTTATTGATCTCTTGGGTCGAG CAGGGATGCTACATGAAGCATATAAACTAATCAAGAGCTTGCCAATTAAGGGTGATGCTACTGCATGGCGTACACTGCTT TCTGCTTGCCGAGTCTATGGAGATGTTAAATTGGCGGAGTATGTAAAAGATGTCATAAACAACATTTATGCAGCGCATCC TACAGATTCCCTCCTCATTTCTAGCACTTATGCAGCTGCTGGAAGAATCTCAGATCTTATACCAATGCAAGAAATAAAAC AAACAAATGTTGTAGTAGAAAATTATGGGTTACATGAAAAAAAGGGAGGAAGTACAGTAAAGGAAGCTGGACTCAGCTGG GTTGTAATTGATAATTAG
Protein sequence (LotjaGi6g1v0363900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGITNTTLALLNSCKNTSDICQLHARMVKTALTNVPFTLSKLLYASILDMDYAASIFSHIQTPNLFMFNTMLRGYSISH YPNKALPIFNQLRNQRSELDRFSFVAVLKACGRGSHVSFGQGVHGIAVRSGNGMFVDVKNTLLRFYCVWRRIEDAHKLFD EFPEGNDLVSWNTLMGGCLVVSQPNLVFDLFRKMCWSGLRASAATVVILLPAAGDRGDFVVGKSLHGYCIQIGLSSHLNV LTALIDMYAKIGRVHWGRKIFDGLVEKDVVLWNCLIGNYARNGLVGEAVYLLQQMRIQGMKTNSSTFVGLLSACPASESI HLVRHVTSFIEEEKLQLDAVLGTALVDMCAKCGFLDEAMGIFERMEDKDVKSWTAMISGHGVHGQPTKAIRLFNRMENEG FKPNGVTFLAILTACSHGGLVIEGMYIFKHMVQEFGFSPHIEHYGCLIDLLGRAGMLHEAYKLIKSLPIKGDATAWRTLL SACRVYGDVKLAEYVKDVINNIYAAHPTDSLLISSTYAAAGRISDLIPMQEIKQTNVVVENYGLHEKKGGSTVKEAGLSW VVIDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 130 | 128 | 5.1E-10 | ||
| PANTHER | 7 | 118 | 112 | 5.0E-94 | – | |
| ProSiteProfiles | 65 | 99 | 35 | 8.013 | ||
| ProSiteProfiles | 100 | 134 | 35 | 5.141 | ||
| PANTHER | 119 | 217 | 99 | 5.0E-94 | – | |
| Gene3D | 131 | 226 | 96 | 2.3E-11 | ||
| ProSiteProfiles | 135 | 165 | 31 | 5.919 | ||
| Pfam | 140 | 162 | 23 | 0.094 | ||
| TIGRFAM | 140 | 162 | 23 | 0.002 | ||
| ProSiteProfiles | 167 | 201 | 35 | 8.89 | ||
| Pfam | 169 | 198 | 30 | 0.0042 | ||
| PANTHER | 205 | 318 | 114 | 5.0E-94 | – | |
| Gene3D | 227 | 334 | 108 | 7.2E-16 | ||
| ProSiteProfiles | 237 | 267 | 31 | 6.226 | ||
| Pfam | 267 | 314 | 48 | 6.8E-9 | ||
| ProSiteProfiles | 268 | 302 | 35 | 10.611 | ||
| TIGRFAM | 270 | 302 | 33 | 2.6E-6 | ||
| PANTHER | 332 | 524 | 193 | 5.0E-94 | – | |
| ProSiteProfiles | 338 | 368 | 31 | 8.966 | ||
| TIGRFAM | 343 | 371 | 29 | 0.0023 | ||
| Gene3D | 345 | 549 | 205 | 1.5E-36 | ||
| Pfam | 368 | 416 | 49 | 1.3E-10 | ||
| ProSiteProfiles | 369 | 403 | 35 | 12.233 | ||
| TIGRFAM | 372 | 404 | 33 | 1.9E-8 | ||
| ProSiteProfiles | 404 | 439 | 36 | 7.837 | ||
| ProSiteProfiles | 440 | 474 | 35 | 7.3 | ||
| Pfam | 443 | 467 | 25 | 0.013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0363900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…