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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0365100 |
| Transcript ID | LotjaGi6g1v0365100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0365100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67732835..67737426) extracted from Lotus japonicus Gifu genome v1.2.
AACCATACTATTATTTCTTTTGTTCTTATCCAATGCTGATGCAGTTAGAACTTACAAGTGGTTGGCACAATATTGGTTAG TCAATAAGGGCCCAGGGATCATACTATCTACTTGGGATTCTATTGTTCTTACCTTCTATTGCTCTATGCTATGTAGGTGT TGATTTTAAGATCAAGCTGCTCACGGTCCGTGGAAAGAGGTTGAAACTAGTTCTATATGGACACTGGTAATCTATAGTTA AATGTCCCCCTTCCGTTTCATGAAATTAGATCTTTTTATTGCCTGGCCTGGAATCATGGGAATTGGATGCAAACAAATAC AATGAAATGTTCCGTACATGCTCATTCTGTTGAATCACTTATCCATTGACCTAAGTGACTTATTGAAATTTGAATAGTAT GTTGAGGACTAATAAAATTACATCTATTGCAGCTGCACAAGAAAGGCTTAGATTTTAGAACGCTAACAAGTTCTTACTAT AGAGGAGCACAGGGAATCATTCTTGGTATGCTAAAATGATTTTTGTTTTCTTTTTCTTTTTCTTTTTGTTCTAAGTTTGA CTATGTAGTTTTTTTTTTCTTTTTGTTCTAAGTTTAACTATGTAGTTTCACAGTCCCAATCAGTTTGGTATTTTTGGTTA TTGGATTGGTTTGGACTATTGTGGTTTTGATTAGAAGAGATATGAAGCTTGATGGAGTCTTGGGAAGAGGGTTTTTTCGT TATTTACATCAATTCTCTTCGTTCTTTTAGCAAGAGTTGGTGTTGATAACATTTTTCCTGATTTCTGTCTTAATTTTGAA CTTTTAATGTAGTTCTGATGTAATTTACTAAAGATGCATAAACTCTAAAGCTTATGATTTCTTCTCACTCTTGTTTGTCG ATTTATTAGTCCAGCCACCTCTGATTGCACACTGATGTCGGTTGGGAAAAAAGTATAGTATTAATTATGCCGATTGCACC TATATACTAATACAGTAGTTAATTATTACTAGTGATCTTCTATATAGTGATGTTTTTCTTTTTAACAGCTGTTCAATGAA CAGTGTAATTGCAACTTTTCCTTTTCTGTGAACATACCATGTATACCCCTCTCGTACTGATCTTAGTGATGCTTTTCTTT TTAACTGCTGATGAATGAACAAGACTGCAACTTTTCCTTTACTATGAACATACTATGTATACCCCTCGTACCAATACCCA TACCAAATACCGGAGCGTATGGCGGACCCGTTAACTATGGTTTGAAACTTACTTGTGTTGTCGATTTATGGGATGGGAAA TATAGTTAGGAAGTTAATACATTGATGGAACCATAGTTTTTATGATGGATTTTGCTTGGATGTAACACTCATATTTAGTT CTTGTGTGAATTCTCTATGCTACTCTTTTGTGCTTGATTATCAAGGGCAGTGTGGATAATCATTAATTTAGGAGTAATTT ATGGTTTAACTATTCTATTTGGTACAGTGATTCTTAATCTCAACCTCTTGCTAAGGAGATTATGGATGGTGATGCCGGAA GTTGGGCGGTGGAATTCATAAGGGGGCGAATTCCAAACAGCACTATACTGAGAGTATTGGTTCGCACCCTCGCTGTTGCT CCGAAGATGGACTCATCGTACTTCAAGACTATGATCCTTGGGATGCTTCAAGAGTGTTGTTGGAGTGTCTCAATTGAGGA ATACATGCTTGAAATTATGGAAATCCTCGAACGAAGTCTTGATCACGAGGGTTCTCCCATCAGCGCTGCCTTTCGTGCCG CATATTGTACGGTGGCCGTGGAATGTACTCTTAAGTACCTTGAGGTAGATCTCTCTAGTCCTAAATACATTGACGCTGTT CAGAGAATATGGTCAGGAAGGGTTAGGCAGATGAGACCCTCTTCTGGTGGTGAAAGCCAATGCCCTTTGTTCTCTGAGGA GTTGGAAAGGTGGATGACAGAGATTGAGGCATCCCTGATAGACACATGTATCAGAGATCGGTTGGCAGCCTTAAAGAACA CTAGAGTCGTGGCCATTCAAAAGCTCAAGATCTTTTTGGCAGAGTCCTGGGATAACTTTGACCCTTCCTTTCTTGAGCAG CTGGCAGGGGAGAATGATGTTTTTCTCTCCAATGTTGCTAAAGGGTGGTGCTTGCCTCCACAGGGTCAGAAAGAGCAACA GAAAGGTCATTTCTTATTTAGACTTTCTTTTTTTGTGGTAAATTATTTTCCTTTTGTAAACACACAACTTACATTGTTAA TTGTTATAAGCACTTTTAAACTAAAATGAAAATTTCCTTCATTTTGTATTCAATAGAAACTGCTAATGTTGGTGACCGTT CTCCAACAACTGCTGATGAGGTAACCATGTCTGTAACTTGTTATTCTGATGGTTGATTTTAAATTAGTATAATACTTATT GATTTCTTTTGCAGTGGAAGAAGTTTGTGAATCGCTCCTGCAGTGGGACATCATATGGTACTCTGCTGCCTAGCCCTAAG ATGAAGAAGGTTTCTCCTTTAAAGGAGTATGATGATTCCACAAATGTTATAAAAAAGAGAAGAATAACAAAAAGATGGAG TCAACTAGAAAAAGAGACTCTACTAGCTGGGGTAAACAAGTATGTGGCTGTTCTAACTAGTTCAACAGTAGTTTTGATTG GTAAGAGATTAAGTTTAACTAATGTTCAAACTAGTTCAACAAGTATGTGGTTGTTCTAGTTAGTTCAAGAAGCAGTAAAC AAGTACTAATGTTCTAACTTGTCTGTTTAGTTTTGACTGATAAGAGAATATGCTTAATTTCTTTGTTTCTTTATGTTATC TTGTTTCAGATTTGGTGAAGGTAACTGGACATTCATTTTAAGTACTCACAAGGATGTGTTTAAAGGGAGAACTTCCGTAA GCCTATGGTTATTTTTCTGTTTGTGGTGTATATGTTACTTTTTTTAAACTTGTGTGCATTTGATGTCAATCAAATGATTT TTTTCAGGTCGATTTAAAGGATAAATGGCGAAACATGAATCTGCATACAGGCATTTGAACGAGACTTTGCCATGACCCGC CCTAAGAAGAAGAAGGTAATGTTAATCATTTCAATTTACTTTTGATCGGCGAAAAATTTCAAAGGATGAACATTCCTGAG GTATATTTGTAGGAGTTATGATACATACACACCTCCACCCATTTTCCACCTTTATTTTCTATCTATTTATCTCTCCTTTA TCAATCAAATCACATATTACATCTTTATTTTCTCTCTCCTTTCTTCCCATCTCTCTCTTCTTCCACCTCTCCACACCTCA AAAAAATGAGGTGTGAAGATATAATTATTGATATTTGTAGTTAGGTTCATTCATGGTATTTATTTTAGCCCAATTATATC AATCATATTGAATAAAGAATTTGAGTTGGCTTAGTGTGAAGTTGTTGCTCAGTTTTATTTATGCTACTATATTGAACTTT GATTTGTCAATTTCCTTAAAATGAATTGATATTATTTGGTTTCTTTCTCTTCCTGGTGAGTATTTAAATTTAATGGCACC AGCTGTTGGAATATTACTATTAGGGAATATCTTAACACAAGACGATGTTAGGGACTATGCTTTTATCAGTTATTGATATT AGAGTAAATATGCTAACTTTTTGAAAATATTCAACTTAGTACCTTTATTTAATTTATCCAGCATCAGAGTAGGACAAGTT TGTGTCCAACTGTAGGTTAATCAAGGACTCTATTACTTCATTTGACTGATAACTATTGACATATAAGTTGTGGTACTTCG TGGGTGGGGTGTGTCAAGTGACAATATTTTGAGTATAGAATTTTCTATGTTGTGAGTTTACACCCTCTTGTTTTTCGCTA AATGGTATGTAGTTATTATTCTCTGTGGCATATTTCTTCAGTAAATTATTAATTATCACATACTCAATATTTTCATTGAA GCTGACAGCTATTCTTTTGTTTCTTTTTCAAGGGGTCTTGGTATCGAGCCAGATTGAGAAGGTAGATCTAATCCATTGTG GCTGGGGCAGATTAAGTGAAGTTTGAATTTGAGGACCTGTTATTTGTATTACGTTTTAGTTTACTTACTATAAGCTGCAA CAAGCACCTCATAAATAATGAATAGCATATAAACCAATTTCAAGTTTTCCAACGGATCAATTCTATTGTTCCAAGGAAAT AAAGCAACATAGTTATACGTAATCATTCCAACGGTTATAATCCTATACTTGGAATGAAATAATGGTAATCATAATTGGAT TTAATTGATTTTATTATTATTTGATTTGCTGTTAACCATAATATTTGTCAATGGCAGTTGGGTATGTTGAAATCAAGGTT GTAAAGATCGGGATCCTACTTAGGTTCGAGAGGGGGGTGAAAAATCATAGATCGGAAGATTGGGATCGAACCATAAGATC CTATAAGAAATGAAAATATGTACTTAGTAAAATACACACATGTAGAAATTTACACATGATGAAAATAATCTGATTCACAT GAAATTAATTTTGAAATTTATGATATACTTCCTAATTTCGTCTGAGTACCTCTTCTCATCTTTCCTTGCGCCACCGTGTG GAGAGGCTAATTTCGTGTCTAAATTCCTCGTC
CDS sequence (LotjaGi6g1v0365100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTGATGCCGGAAGTTGGGCGGTGGAATTCATAAGGGGGCGAATTCCAAACAGCACTATACTGAGAGTATTGGT TCGCACCCTCGCTGTTGCTCCGAAGATGGACTCATCGTACTTCAAGACTATGATCCTTGGGATGCTTCAAGAGTGTTGTT GGAGTGTCTCAATTGAGGAATACATGCTTGAAATTATGGAAATCCTCGAACGAAGTCTTGATCACGAGGGTTCTCCCATC AGCGCTGCCTTTCGTGCCGCATATTGTACGGTGGCCGTGGAATGTACTCTTAAGTACCTTGAGGTAGATCTCTCTAGTCC TAAATACATTGACGCTGTTCAGAGAATATGGTCAGGAAGGGTTAGGCAGATGAGACCCTCTTCTGGTGGTGAAAGCCAAT GCCCTTTGTTCTCTGAGGAGTTGGAAAGGTGGATGACAGAGATTGAGGCATCCCTGATAGACACATGTATCAGAGATCGG TTGGCAGCCTTAAAGAACACTAGAGTCGTGGCCATTCAAAAGCTCAAGATCTTTTTGGCAGAGTCCTGGGATAACTTTGA CCCTTCCTTTCTTGAGCAGCTGGCAGGGGAGAATGATGTTTTTCTCTCCAATGTTGCTAAAGGGTGGTGCTTGCCTCCAC AGGGTCAGAAAGAGCAACAGAAAGAAACTGCTAATGTTGGTGACCGTTCTCCAACAACTGCTGATGAGTGGAAGAAGTTT GTGAATCGCTCCTGCAGTGGGACATCATATGGTACTCTGCTGCCTAGCCCTAAGATGAAGAAGGTTTCTCCTTTAAAGGA GTATGATGATTCCACAAATGTTATAAAAAAGAGAAGAATAACAAAAAGATGGAGTCAACTAGAAAAAGAGACTCTACTAG CTGGGGTAAACAAATTTGGTGAAGGTAACTGGACATTCATTTTAAGTACTCACAAGGATGTGTTTAAAGGGAGAACTTCC GTCGATTTAAAGGATAAATGGCGAAACATGAATCTGCATACAGGCATTTGA
Protein sequence (LotjaGi6g1v0365100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDAGSWAVEFIRGRIPNSTILRVLVRTLAVAPKMDSSYFKTMILGMLQECCWSVSIEEYMLEIMEILERSLDHEGSPI SAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDR LAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQGQKEQQKETANVGDRSPTTADEWKKF VNRSCSGTSYGTLLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWSQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTS VDLKDKWRNMNLHTGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 196 | 196 | 1.2E-72 | – | |
| PANTHER | 1 | 196 | 196 | 1.2E-72 | – | |
| PANTHER | 236 | 331 | 96 | 1.2E-72 | – | |
| PANTHER | 236 | 331 | 96 | 1.2E-72 | – | |
| Gene3D | 269 | 334 | 66 | 1.5E-16 | – | |
| ProSiteProfiles | 276 | 336 | 61 | 11.715 | ||
| SUPERFAMILY | 278 | 331 | 54 | 3.29E-14 | ||
| SMART | 280 | 333 | 54 | 2.6E-4 | ||
| Pfam | 281 | 330 | 50 | 1.1E-7 | ||
| CDD | 282 | 331 | 50 | 1.77636E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0365100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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