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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0114209 |
| Transcript ID | Lj0g3v0114209.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi|356554527|ref|XP_003545597.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 223 | 210 | 2.50E-152 | ||
| PANTHER | 14 | 223 | 210 | 2.50E-152 | – | |
| Gene3D | 38 | 110 | 73 | 1.20E-17 | ||
| SUPERFAMILY | 42 | 108 | 67 | 8.94E-19 | – | |
| SMART | 50 | 87 | 38 | 4.70E-06 | ||
| ProSiteProfiles | 50 | 87 | 38 | 11.752 | ||
| Pfam | 50 | 87 | 38 | 2.50E-10 | – | |
| CDD | 50 | 87 | 38 | 3.36E-08 | – | |
| ProSitePatterns | 65 | 74 | 10 | – | ||
| Coils | 136 | 159 | 24 | – | – | |
| Coils | 173 | 200 | 28 | – | – | |
| MobiDBLite | 220 | 278 | 59 | – | – | |
| PANTHER | 298 | 674 | 377 | 2.50E-152 | ||
| PANTHER | 298 | 674 | 377 | 2.50E-152 | – | |
| SMART | 355 | 399 | 45 | 0.07 | ||
| Gene3D | 355 | 670 | 316 | 2.90E-57 | ||
| ProSiteProfiles | 367 | 627 | 261 | 26.867 | ||
| SUPERFAMILY | 372 | 670 | 299 | 1.38E-54 | ||
| SMART | 410 | 449 | 40 | 1 | ||
| SMART | 452 | 492 | 41 | 1.30E-07 | ||
| Pfam | 454 | 491 | 38 | 0.0019 | ||
| ProSiteProfiles | 459 | 491 | 33 | 10.074 | ||
| SMART | 493 | 534 | 42 | 0.11 | ||
| SMART | 538 | 576 | 39 | 1.60E-08 | ||
| Pfam | 540 | 576 | 37 | 8.40E-05 | ||
| ProSiteProfiles | 545 | 585 | 41 | 13.416 | ||
| ProSitePatterns | 563 | 577 | 15 | – | ||
| SMART | 579 | 618 | 40 | 2.1 | ||
| SMART | 633 | 672 | 40 | 420 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0114209.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0114209.1, powered by CORGI.
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