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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2822820 |
| Transcript ID | Lj1g3v2822820.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] gi|356513749|ref|XP_003525573.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 4 | 14 | 11 | – | – | |
| Phobius | 15 | 26 | 12 | – | – | |
| Phobius | 27 | 803 | 777 | – | – | |
| ProSiteProfiles | 73 | 108 | 36 | 5.525 | ||
| ProSiteProfiles | 134 | 168 | 35 | 6.226 | ||
| PANTHER | 145 | 339 | 195 | 2.40E-234 | – | |
| PANTHER | 145 | 339 | 195 | 2.40E-234 | – | |
| Pfam | 168 | 216 | 49 | 1.40E-10 | ||
| ProSiteProfiles | 169 | 203 | 35 | 9.865 | ||
| TIGRFAM | 172 | 204 | 33 | 0.0012 | ||
| ProSiteProfiles | 204 | 234 | 31 | 5.152 | ||
| ProSiteProfiles | 236 | 270 | 35 | 6.577 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.345 | ||
| TIGRFAM | 273 | 307 | 35 | 8.90E-08 | ||
| Pfam | 274 | 303 | 30 | 7.00E-05 | ||
| Pfam | 305 | 352 | 48 | 2.30E-08 | ||
| ProSiteProfiles | 306 | 340 | 35 | 11.137 | ||
| SUPERFAMILY | 308 | 337 | 30 | 5.12E-05 | ||
| TIGRFAM | 309 | 341 | 33 | 1.10E-06 | ||
| ProSiteProfiles | 341 | 375 | 35 | 6.489 | ||
| Pfam | 372 | 403 | 32 | 4.00E-06 | ||
| PANTHER | 375 | 510 | 136 | 2.40E-234 | – | |
| PANTHER | 375 | 510 | 136 | 2.40E-234 | – | |
| ProSiteProfiles | 376 | 410 | 35 | 10.567 | ||
| TIGRFAM | 378 | 411 | 34 | 7.30E-06 | ||
| SUPERFAMILY | 409 | 447 | 39 | 5.12E-05 | ||
| ProSiteProfiles | 411 | 445 | 35 | 12.595 | ||
| Pfam | 412 | 459 | 48 | 1.70E-14 | ||
| TIGRFAM | 415 | 447 | 33 | 3.70E-10 | ||
| ProSiteProfiles | 446 | 480 | 35 | 10.95 | ||
| TIGRFAM | 448 | 481 | 34 | 0.0011 | ||
| ProSiteProfiles | 481 | 515 | 35 | 8.703 | ||
| SUPERFAMILY | 482 | 521 | 40 | 5.12E-05 | ||
| Pfam | 486 | 512 | 27 | 0.79 | ||
| ProSiteProfiles | 536 | 570 | 35 | 5.229 | ||
| Pfam | 546 | 567 | 22 | 0.14 | ||
| ProSiteProfiles | 571 | 605 | 35 | 8.243 | ||
| Gene3D | 576 | 773 | 198 | 4.40E-05 | ||
| SUPERFAMILY | 578 | 672 | 95 | 5.12E-05 | ||
| PANTHER | 601 | 788 | 188 | 2.40E-234 | – | |
| PANTHER | 601 | 788 | 188 | 2.40E-234 | – | |
| ProSiteProfiles | 606 | 640 | 35 | 10.095 | ||
| TIGRFAM | 608 | 642 | 35 | 3.00E-06 | ||
| Pfam | 608 | 638 | 31 | 0.0031 | ||
| Pfam | 640 | 686 | 47 | 8.10E-20 | ||
| ProSiteProfiles | 641 | 675 | 35 | 14.984 | ||
| TIGRFAM | 643 | 677 | 35 | 7.30E-13 | ||
| ProSiteProfiles | 676 | 711 | 36 | 6.665 | ||
| ProSiteProfiles | 712 | 746 | 35 | 12.803 | ||
| Pfam | 712 | 755 | 44 | 4.50E-14 | ||
| TIGRFAM | 714 | 747 | 34 | 4.40E-09 | ||
| SUPERFAMILY | 716 | 772 | 57 | 5.12E-05 | ||
| ProSiteProfiles | 747 | 781 | 35 | 12.299 | ||
| TIGRFAM | 749 | 782 | 34 | 7.30E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2822820.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2822820.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.