Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4419670.3

Overview

Field Value
Gene ID Lj1g3v4419670
Transcript ID Lj1g3v4419670.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10367:SF0
1 272 272 8.00E-116 –
ProSiteProfiles
PS50056
1 69 69 12.048
IPR000387
PANTHER
PTHR10367
1 272 272 8.00E-116 –
SUPERFAMILY
SSF52799
2 92 91 6.39E-23
IPR029021
Gene3D
G3DSA:3.90.190.10
2 93 92 2.60E-22
IPR029021
Pfam
PF00782
6 75 70 9.80E-11
IPR000340
ProSitePatterns
PS00383
22 32 11 –
IPR016130
CDD
cd07895
136 272 137 5.85E-46 –
SUPERFAMILY
SSF56091
140 272 133 6.62E-23 –
Gene3D
G3DSA:3.30.470.30
155 272 118 1.90E-25 –
Pfam
PF01331
166 272 107 4.30E-40
IPR001339

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004484
Molecular function MRNA guanylyltransferase activity Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
Subterm of
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0006370
Biological process 7-methylguanosine mRNA capping Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
Subterm of
GO:0008138
Molecular function Protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4419670.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4419670.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.