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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4717440 |
| Transcript ID | Lj1g3v4717440.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Signal recognition particle 54 kDa protein [Medicago truncatula] gi|357511109|ref|XP_003625843.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 441 | 439 | 0 | – | |
| PANTHER | 3 | 441 | 439 | 0 | – | |
| SMART | 9 | 94 | 86 | 1.60E-29 | ||
| Gene3D | 10 | 98 | 89 | 3.70E-36 | – | |
| TIGRFAM | 11 | 435 | 425 | 1.00E-166 | ||
| Hamap | 13 | 450 | 438 | 32.287 | ||
| Pfam | 13 | 90 | 78 | 8.30E-19 | ||
| SUPERFAMILY | 50 | 361 | 312 | 3.48E-56 | ||
| Gene3D | 104 | 304 | 201 | 9.40E-79 | ||
| SMART | 107 | 254 | 148 | 4.30E-10 | ||
| SMART | 108 | 303 | 196 | 1.20E-106 | ||
| Pfam | 109 | 303 | 195 | 1.60E-76 | ||
| CDD | 109 | 281 | 173 | 1.09E-92 | – | |
| ProSitePatterns | 276 | 289 | 14 | – | ||
| Gene3D | 334 | 436 | 103 | 7.90E-28 | ||
| SUPERFAMILY | 334 | 435 | 102 | 1.11E-26 | ||
| Pfam | 334 | 432 | 99 | 4.70E-24 | ||
| MobiDBLite | 393 | 418 | 26 | – | – | |
| MobiDBLite | 447 | 494 | 48 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of Lj1g3v4717440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4717440.1, powered by CORGI.
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