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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013822
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.580s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0131509.2
n.a. PREDICTED: cell division protein ftsY homolog [Glycine max] gi|356504906|ref|XP_003521235.1| chr0 59826316 59832174 -
4 domain predictions
2 GO terms
Lj1g3v4717440.1
n.a. Signal recognition particle 54 kDa protein [Medicago truncatula] gi|357511109|ref|XP_003625843.1| chr1 56300146 56305475 -
3 domain predictions
2 GO terms
Lj3g3v0044270.1
n.a. Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1| chr3 550195 556212 -
4 domain predictions
2 GO terms
Lj4g3v0510210.1
n.a. Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1| chr4 8700463 8704337 -
4 domain predictions
2 GO terms
Lj4g3v1983620.1
n.a. Signal recognition particle receptor subunit alpha [Medicago truncatula] gi|357480047|ref|XP_003610309.1| chr4 27655277 27659613 -
4 domain predictions
2 GO terms
Lj6g3v1077660.1
n.a. PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max] gi|356517002|ref|XP_003527179.1| chr6 12587209 12590890 +
4 domain predictions
2 GO terms
LotjaGi1g1v0675200.1
n.a. Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|A0A0B2P3G8|A0A0B2P3G8_GLYSO Signal recognition particle 54 kDa protein, chloroplastic; Found in the gene: LotjaGi1g1v0675200 LjG1.1_chr1 124231869 124240071 +
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.1
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 894455 903932 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.2
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899146 903940 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.3
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899231 903360 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.4
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899231 903662 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.5
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899281 903360 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.6
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899305 903360 -
3 domain predictions
2 GO terms
LotjaGi3g1v0007800.7
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 LjG1.1_chr3 899305 903662 -
3 domain predictions
2 GO terms
LotjaGi3g1v0355000.1
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A0D2UQY3|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000 LjG1.1_chr3 73671131 73676337 -
3 domain predictions
2 GO terms
LotjaGi3g1v0355000.2
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|I1KVG2|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000 LjG1.1_chr3 73671396 73676344 -
3 domain predictions
2 GO terms
LotjaGi3g1v0355000.3
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|I1KVG2|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000 LjG1.1_chr3 73671558 73676373 -
3 domain predictions
2 GO terms
LotjaGi3g1v0355000.4
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A0D2UQY3|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000 LjG1.1_chr3 73671824 73676181 -
3 domain predictions
2 GO terms
LotjaGi3g1v0377700.1
n.a. Signal recognition particle protein; TAIR: AT2G45770.1 signal recognition particle receptor protein, chloroplast (FTSY); Swiss-Prot: sp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic; TrEMBL-Plants: tr|I1JKD2|I1JKD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0377700 LjG1.1_chr3 77050476 77059846 +
3 domain predictions
2 GO terms
LotjaGi3g1v0377700.2
n.a. Signal recognition particle protein; TAIR: AT2G45770.1 signal recognition particle receptor protein, chloroplast (FTSY); Swiss-Prot: sp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic; TrEMBL-Plants: tr|I1JKD2|I1JKD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0377700 LjG1.1_chr3 77050763 77056319 +
3 domain predictions
2 GO terms
LotjaGi3g1v0377700.3
n.a. Signal recognition particle protein; TAIR: AT2G45770.1 signal recognition particle receptor protein, chloroplast (FTSY); Swiss-Prot: sp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic; TrEMBL-Plants: tr|I1JKD2|I1JKD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0377700 LjG1.1_chr3 77050851 77055110 +
3 domain predictions
2 GO terms
LotjaGi4g1v0068100.1
n.a. Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi4g1v0068100 LjG1.1_chr4 8535860 8539824 -
3 domain predictions
2 GO terms
LotjaGi4g1v0288400.1
n.a. Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|G7JGN9|G7JGN9_MEDTR Signal recognition particle receptor protein, putative; Found in the gene: LotjaGi4g1v0288400 LjG1.1_chr4 66065208 66069654 -
3 domain predictions
2 GO terms
LotjaGi4g1v0288400.2
n.a. Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|G7JGN9|G7JGN9_MEDTR Signal recognition particle receptor protein, putative; Found in the gene: LotjaGi4g1v0288400 LjG1.1_chr4 66065825 66069322 -
2 domain predictions
2 GO terms
LotjaGi6g1v0202600.1
n.a. Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|A0A1J7GDN0|A0A1J7GDN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0202600 LjG1.1_chr6 49982740 49987052 +
3 domain predictions
2 GO terms
LotjaGi6g1v0202600.2
n.a. Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|A0A1J7GDN0|A0A1J7GDN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0202600 LjG1.1_chr6 49983153 49986637 +
3 domain predictions
2 GO terms