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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1203330 |
| Transcript ID | Lj5g3v1203330.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cryptochrome-2-like [Glycine max] gi|356576533|ref|XP_003556385.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 147 | 146 | 4.60E-45 | ||
| ProSiteProfiles | 4 | 133 | 130 | 35.031 | ||
| PANTHER | 5 | 538 | 534 | 2.80E-301 | – | |
| TIGRFAM | 5 | 481 | 477 | 5.50E-272 | ||
| PANTHER | 5 | 538 | 534 | 2.80E-301 | – | |
| SUPERFAMILY | 6 | 174 | 169 | 1.31E-49 | ||
| Pfam | 6 | 162 | 157 | 3.50E-40 | ||
| PRINTS | 142 | 158 | 17 | 1.40E-12 | ||
| Gene3D | 148 | 170 | 23 | 1.70E-36 | – | |
| SUPERFAMILY | 193 | 487 | 295 | 1.70E-100 | ||
| Gene3D | 205 | 291 | 87 | 1.70E-36 | – | |
| Pfam | 283 | 480 | 198 | 5.40E-60 | ||
| Gene3D | 292 | 484 | 193 | 3.60E-63 | – | |
| PRINTS | 332 | 348 | 17 | 1.40E-12 | ||
| ProSitePatterns | 332 | 344 | 13 | – | ||
| PRINTS | 352 | 370 | 19 | 1.40E-12 | ||
| ProSitePatterns | 352 | 371 | 20 | – | ||
| MobiDBLite | 525 | 572 | 48 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Blue light signaling pathway | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. | ||
| Molecular function | Blue light photoreceptor activity | The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation. |
Expression pattern of Lj5g3v1203330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1203330.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.