Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR002081 is a Cryptochrome/DNA photolyase class 1.
<p>The cryptochrome and photolyase families consist of structurally related flavin adenine dinucleotide (FAD) proteins that use the absorption of blue light to accomplish different tasks. The photolyasess use the blue light for light-driven electron transfer to repair UV-damaged DNA, while the cryptochromes are blue-light photoreceptors involved in the circadian clock for plants and animals [[cite:PUB00076729], [cite:PUB00076730]]. On the basis of the primary structure, the cryptochrome/DNA photolyase family can be grouped into two classes [[cite:PUB00001269]]. The first class contains cryptochromes and DNA photolyases from eubacteria, archaea, fungi, animals and plants. The second class contains DNA photolyases from prokaryotes, plants and animals.</p> <p>This entry represents the class1 cryptochrome/DNA photolyase family. Its members include cryptochromes, DNA photolyases and cryptochrome-DASH (Cry-DASH). The Cry-DASH family members have been shown to act as photolyases with high degree of specificity for cyclobutane pyrimidine dimers in ssDNA [[cite:PUB00076728]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Cryptochrome [Medicago truncatula] gi|357489649|ref|XP_003615112.1| | 19 | ||
– | Cryptochrome-1-like [Glycine max] gi|359806517|ref|NP_001241002.1| | 24 | ||
– | PREDICTED: cryptochrome-2-like [Glycine max] gi|356576533|ref|XP_003556385.1| | 21 | ||
– | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
– | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
– | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
– | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
– | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
– | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
– | Cryptochrome; TAIR: AT5G24850.1 cryptochrome 3; Swiss-Prot: sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JCC1|G7JCC1_MEDTR Cryptochrome, DASH family protein; Found in the gene: LotjaGi1g1v0392600 | 27 | ||
– | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|A0A151U5N9|A0A151U5N9_CAJCA Cryptochrome-2; Found in the gene: LotjaGi5g1v0191200 | 23 | ||
– | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
– | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
– | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 7.14 |