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IPR014134 is a Cryptochrome, plant.
<p>The cryptochrome and photolyase families consist of structurally related flavin adenine dinucleotide (FAD) proteins that use the absorption of blue light to accomplish different tasks. The photolyasess use the blue light for light-driven electron transfer to repair UV-damaged DNA, while the cryptochromes are blue-light photoreceptors involved in the circadian clock for plants and animals [[cite:PUB00076729], [cite:PUB00076730]].</p> <p>Members of this subfamily are from plants; they appear mostly to be regulatory proteins that respond to blue light. For instance, Arabidopsis cryptochromes Cry1 and Cry2 antagonistically regulate primary root elongation [[cite:PUB00076731], [cite:PUB00076732]]. Cry2 is also reported to interact with CIB1 and regulate transcription and floral initiation [[cite:PUB00076733]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Blue light signaling pathway | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. | ||
| Molecular function | Blue light photoreceptor activity | The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Cryptochrome [Medicago truncatula] gi|357489649|ref|XP_003615112.1| | 19 | ||
| – | Cryptochrome-1-like [Glycine max] gi|359806517|ref|NP_001241002.1| | 24 | ||
| – | PREDICTED: cryptochrome-2-like [Glycine max] gi|356576533|ref|XP_003556385.1| | 21 | ||
| – | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
| – | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|A0A151U5N9|A0A151U5N9_CAJCA Cryptochrome-2; Found in the gene: LotjaGi5g1v0191200 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 7.69 |