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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0053500 |
| Transcript ID | LotjaGi1g1v0053500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G40830.1 RING-H2 finger C1A; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|A0A151QZ96|A0A151QZ96_CAJCA RING finger protein 126 family; Found in the gene: LotjaGi1g1v0053500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7534088..7542870) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAGTAACAAAAATCAAAAGTTATCTACTTGTACCATTTCACACTGATGGAAATTTACAGCATAGTTTAGTCTTTCT TTAATGCAATTTCCATTATCTTTTCCTACCTAAGAAAGTGGTGAAAATCAAGAGACTTTTTTCCTAGGGACAACCCCAGG CCCCAGAACCAGGACAAACACCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCAGAATCTGAAGCTACTCAGCTC AAAATTTCTTGTTTTTTCCTTTGGTAAGTTCACTCTCATGAATCCTCAACCTCACAGTCTAATCCTATAGTTTTTGTTTG TTATCAATTTTTCTTTATATATATATATATATATATATATATATTCTTTGCCTTCGATTCTGTGTGATTTTGAGTTTAAT CTGGTCCTTTGAGTAAATGGGTATTGATTAATTGATACCCCATTTTAAAAAATTGGTGCTTTAATTACAAGTGCTGTGTT TTCTTCTTACCATGATTTTGAGTTGGGGTTTGGTTGTGCTTTTTTTTCTCTACTGTTACTGTTTCTGAGGTTATGGTTAC TGATTATGAGTGCTCTTTGCTTCATGCATGGATTTTGATACCCCTTTAGTTATCTTTGGTAAATTTCTTTCATCTCAGTT GGGAGAATTTTGATTTCATTTGTGATGATGATTATGCTCAGAAATTTCCTCCCTTCTGTAACTGTTGGACCTGATTTCTG GACTGTTCTTTGTTGTGTTGAAGGATGGAATTGTAGCTTTTTGTCTGGTAGAAAATGAAAAAACTCGTTGCAATTGGTTG TGGGGTAATTTTGTTCATGTTCATTAATTTTCAATGGATGATTTATATTTTGTAATGTGCAATTATGGTCAAATTTGTTC TGGTGTTCCAATTCCATGGTTTGATCCTGTTAGAAGTCCCACATTGGCTAGAGATAAGACCAATCAAGTGTTTATAAAGG TTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGCCTAT CCTAGATCCATTTGTTGTGGAGACCACCCATATTTGGGCCACCCGTTGTTGATCCCACGTTCCAGTCTGTTCAATCCTGG ACGTGAGGGGGTGTGTTAGAAGTCCCACATTGGCTAGAGATAAGGCCAATCAAGTGTTTATAAAGGTTGTGCAAACCTCA ACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAAATGATATAATTGACTTTATAGTAGCAGCTCCT CTGTTTGTAGTAGACTTCACTTGCCCTTTAGTCGGAAATCATGTAATTGTAAGGATTGTTTTTTATGTGGTTTTGTAAAC TGAATACAGCCTTAGTAGAAACCTACTTGATTTATAATCTCCTTTTGTTATAGTTGAAATATTTGGTAATATTATTGATA TAAAAAACTGTACAGGGATTCCTCTTCTTATAGAGGGAATTACATAATGTGATTGATCAAAGTCAAAGAAGGAAATCCTT GACTAAAGAGAGAATTAGGGAGAATGAATGAAAATAAGAAACTACCTAAAATAAACTAAGTACAAACAGGAAACAACATA ATTATATACAAACAAAAATATAACTGCTAATTAAGAGCATTAAATGCTCTATTTCACAGTCTGTTGACACTCCCCCTCAA GCTGGCCTAAAGATATCCTCCATAGACAGCTTGCTAGTTATGTTGTCAAAGGATTTCTTGGGTAATCCTTTGGTTAGGAT GTCTGCCGATTGCTCTGCAGTGGGAACATATGTAATACAAATCTGCCCACTTTCTATCTTCTCTCTGATGAAGTGTTTAT CAACTTCGACATGCTTGGTCCTATCATGTAGGACCGGGTTGTGTGCAATAGATATTGCAGACTTGTTGTCACAATAAAGC TTTATTGGAGGAGAATTGAAAACCTTTAATTCCTGTAGAAGCTTTTCCACCCATAATGCCTCACAAATTCCATGAGCAAC TGCTCTAAATTCAGCTTCTGCACTACTCCTTGCTACAACGGTTTGTTTTTTACTTCTCCAACTAACCAAGTTTCCTCCAA CAAAGGTGCAATAGCCTGATGTTGATCTTCGGTCTGTCACACTCCCTGCCCAGTCTGCATCAGTGTAGGCTTCTACCTGA AGGTGCCCACGGTTTTTATAAAGAAGCCCCTTCCCAGGTGATCCCTTCAAGTATCTTAAGATTCTAAAAACTGCCTCCAA GTGTTCATGACCTGGTGCATGCATAAACTGGCTTACCATGCTTACAGCAAAGGCAATGTCTGGACGGGTGTGAGATAAGT ATATTAGCCTTCCCACTAGTCGCTGATACCTTCCTTTGTCCACCATATTTTCTGTTTCAGCTGGTTGCAGCTTTAAGTTG GGCTCCATGGGTGTTTCTACAGCTTTGCATCCAAGTAATCCTGTTTCTTTTAAAAGATCCAGAATATACTTTCGCTGGTT CATAAAGATACCTTCCTTTGATCTTGCAAACTCAATTCCAAGGAAGTATTTCAATGGGCCAAGTTCCTTGATTTCAAAAA CTTTAGCAAGTTTCTCCCTCAGATTTTTGAGTTCCAAGCTATCATCACCTGTCAGAATAATATCATCAACATATACAATC AAGATAGCAACCTTATTATCTGCTGAATGTTTATAGAACAATGTGTGATCAGCTTGGCTTTGGATATATCCAAGCCCTTT TACCACTGTTCCAAACCTCTCAAACCATGCTCTTGGAGATTGCTTCAGCCCATATAATGACTTCTTTAGTCTACACACCT TATTTCTTCCAAGTTCTTCTTCAAATCCGGGGGGAAGACTCATAAACACTTCTTCCTCTAACTCCCCATTCAGGAAAGCA TTCTTTACATCCAATTGATGTAAAGGCCAGTTGTAACTTGCAGCAAGGGATATAAGAATCCGAACAGAGTTAAGTTTAGC AACTGGAGCAAACGTCTCTTGATAGTCTACTCCATAAGTTTGAGTGAACCCTTTTGCCACCAATCTCGCCTTGTACCTCT CTACACTTCCATCGGCCTTGCACTTAATGGTAAATACCCACTTACAACCCACCTGTTTTTTGTCACGTGGCAGGTCTGTT ATTTCCCAAGTTTCATTCTTTTTCAGTGCACTCAACTCTTCTAAGACTGCTAAATTCCAATTGGGATCATCTAGTGCTTC CTCAATGTTTCTAGGCACAAACAGATCTGTTATTTTAGAGGTAAAAGCTTTGTGATTCGGTGAAAGATTTTGGTAGGAAA CATATTGGGAAATGGGATGGTTTGTGCTAGATTTTTCTGATTTTTGGGTGCAGGTTCTGGTTCCTTTTCTAATAGCTATG GGTAATTCAATAGTAGAAGTGAAAATGTCAGTGTTACCTCGAATTTCTTGTGGTATTCTTACTTGGCCTTCTTCCGGGAT TTCTGGTTGGCTTGGTGCAGAGATGATGGATTGGTCTTTGGTCCTTTTAGGATACTTCCGAGTATAAACATGGAACTCCT TTTTTGACTGTGGTATTTCTTTCTCTGTTTGGGCTCCACCTAAGTCTGGCATAAGATTTTCTTTAGAAATTTCAGAACTT GTTTCCACATGTTCTTCCTTGTTGCATTCATCAATAAAATTTGTATTCTCGGTGTCTACAATAGGAATGGGCAGGGGTTC ATGCAAAAAATTGTCTTCACTCACATTATTATTCTCCCCCTGAAGGGAATTTTTTTGAAAAAAAGGTTGATGTTCAAGAA AGGTAACATCCATGCTAACACAAAGCTTCTTTGTGATAGGATTAAAGACTCTATATCCTTTTTGGTTTGGAGAATAACCA ACAAAAATGCATTTTTCTGCCCTTGGGTCTAGTTTGGACCGAGATGTGGAAGGTTTATGCATAAAAACTGTACAACCAAA CACCTTTAAAGGCATATCAGTATGTAATCGACATGCTGGAAAAATGGTTTTGAAATTTTCCAAAGGTGTGCGATAATTCA ACACACGAGTGGGCATTCTATTTATAAGATAGGCTGCTGTTAGGACAGCATCTCCCCACAAATACTTTGGAACATTACTC TCAAACATAATGGCACGAGCTACTTCAAGGAGATGTTTATTTTTTCTTTCAGCGGTGCCATTTTGTTGAGGAGTATTTGG ACATGTCGATTGATGCTGAATGCCTTTATTTTTCAGAAACTCATTGAGATTTTGATTGAAGTACTCAGTTCCATTATCAC TCCTCAAAATGGAGATCTTTGTATCAAATTGAGTTTCTACCATTTGTGAAAAACTTTTAAATATATTAGGAACTTCAGAT TTTTCATGCATAAGGTAGACCCAACACAACCGGGTGTGATCATCTATGAAGGTTACAAACCACCTTTTTCCAAATTGAGT TGTAATTTTTGAAGGCCCCCAAACATCACTATGGATTAAGTAAAAAGGTCTAGATGCATGATAAGGTTGAGAATAATAAG GAGCTCTTTGATTTTTTGCAAGAACACAACTTTCACATTCAAGAGAAGAACAATTAACATTTTTGAATAAATCTGGAAAC AAATGCCTAAGATATTGAAAATTCGGGTGCCCTAGTCTGTTATGCCAGAGCATTATTTGGTCCCTAACAGAGGTGCAACT CATACCACAAAGACCCTGAGCTGCTTTATTTCTGAAAGTATCCTCAAAGTAGTAAAGTCCATCCTTCATCTTAGCACTGC CAATCATCTTCCCCGAAATCCGGTCCTGAAAAACACAATGAGTGTCAAAGAATGTCACACTGCAATTGGAATCTTTGCAG ATTTTGCTAATAGAAAGAAGGTTGCAAGATAGTTTGGGCACATGTAAAACTTTTCCTAAGTCAATGTTATTGGATAAGGT AATCTTCCCCTTCCCTGCAATTGCGGAAAAAGAACCATCTGCAATTCTAATTTTTCCATTTCCAGAACAAGGAGAATAGG TTTTAAATAAAGGAGAAAGGCTAGTCATATGATCTGAAGCACCTGAATCAATGATCCATGGTGCATGAATATTTGAGGTG CAATTAAGGGAGCTAGGGGTAGAAAAATTACCTGTTTGTGCCACAGAACCACTAGGAGTACCAGATAAAAAATTAGAATT TAACAACCTTATGAGTTCCTCAACTTGTTCCTTTTTCAAGGAAGTCTTTTCTGCCTCATGAGCTGTAGGGAAAGATTTTT GATTTTTAGGACCTGACTTGCCACCCTTTAGATGTGCTGGCCTCCCAATAATTTTCCAGCAACTTTCCCGAGTATGACCG GGTCTGTTGCAGTGATCACACCAGCGGTTTGAGAAGTTCTTCTGGTTAGTAGAAGTCTTAAGGGCAGCAGTTTCTACAGC AAGAGCATTGGTCTCAGAAGGAGGTGCATCCGTTTTGGTCTTTCCCATCATCACACTTCTGCGAGTTTCCTCTCTTCTAA CTTCAGCAAAGACCTCACCCAATGAAGGTAAGGTTGCTCTCCCAATGATTCTGCCACGAACTTCATCTAGCTCTTCATTC AGACCAGCAAGAAACTGAAATATTCTACCTTCTTCCACGGTTTGTCGATGGTGTTTGGCATCCTCTGCAGAGTTCCACTT GTAAGTGTTGAAGAGATCTAGATCCTGCCAAACTCGCTTCAAAGAGTGGAAGTATTTTGTCACGTTATTACCTCCCTGCC GAATTTCTCTGACTTTCAAGGTGAGTTCATAGATCTGAGATTTGTTCTCAAGATCTGAATACATTTCCGTGACACTATCC CATAGCTCTTTGGCTGTGGAATAACACATGTAATTGCTGCTAATGTCCTCCTCCATGGAGTTTACCAGCCATGTCATCAC CATGGAGTTTTCAGCGTCCCAAACAGCATATTGTGGATCAGCAATATCTGGCATGGGTTTCTCACCAGTGAGATACCCAA GTTTTCCTCTGCCACGAATATACAACTGGACAGATTGGGACCACCGGAAATAGTTCGACCCATTGAGTCGAAAAGTGGTG ATTTGGACAGAATGAGATTCACCGAACAGGACTCGCTGCTCCTGCCTTGGAGGCACAGAATGAGATTCGCCAAACAGGAC TCGCTGCTCCTGCCTTGGAGGCTGCGAGACTTTGGGAACCACAATCTCCTCCGTATTCTGATCATCGCTGGCTGAGGAAC TGTCAGCCATGGATGCAAATCAGATGCGCAGAGATCTTTGCTCTGATGCCAAGTTGAAATATTTGGTAATATTATTGATA TAAAAAACTGTACAGGGATTCCTCTTCTTATAGAGGGAATTACATAATGTGATTGATCAAAGTCAAAGAAGGAAATCCTT GACTAAAGAGAGAATTAGGGAGAATGAATGAAAATAAGAAACTACCTAAAATAAACTAAGTACAAACAGGAAATAACATA ATTATATACAAACAAAAATATAACTGCTAATTAAGAGCATTAAATGCTCTATTTCACAGTCTGTTGACAGTTATTAAAAG TTAGTTTTAGATAGGAATATGCTGCTATCATTTGCCTGCGTCCCAATCTAGCCCTTGATCTTATTTTGGTCCCTTTGTCA GTTTACTCAAAAGCTTGACCTCAATGTGATTTTGTCAGCCTGTGTGCTTCTAAGAATTTCACCCAAAGTCCAAACATGTA CTGATGATGAAAAAACATGTTAGAGAAGACCAAGCATATACCAAGTTTAGCTAGAGATAGCCTGTTCCGGTTTCACTCTT ACTAAGTTACCTCTGGTTAGTTATTCATATCAGGACTAATCTAGCATAGCTAAATGGCATATTGAATCTTCAGGGCTTGT TTCATTTATTGATTTCAACTTTATAATTGTTTTTTGATCTATTAAATATTAGTTGTTTTTCTGAATATGTATTACATATT TGACGCAGAGGAAAAGTTGAATTTTGGTGCAGATACTTCTATTTGATTGTTAAAGCGAAAGAATGTCAAGTGGAGCAACA CACTGGTGTTATGAATGCAGTCAGCCAATTGTGCCTGAAGGGAGGGATGCCATTTGCCCTTACTGTGATGGGGGGTTTGT ACAAGAACTCAATGAGTTGCAAGGAGGTGTTGCACCATCGCAGTCGGGGGAGTTTCATCAAATGCCTGACCTTTTTGATG CTATACATGCTTTTATGGGGCAGAGAGGTTCTGAGCCGAGATTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCAT AGAATGGCTGGAAGGCACCCAAACTTTGATGTTAGAGGGAGGTCTGGTCCTGCTCCTGCTCCTCCTCCTGAACAGAGCTG GGGTGTTTACAGTTCTGGTCCATATCTAATTTTCCATGGTCAAGTTCCTGGATTTACGTTCTCTAATGGCGGCCCAAGAG GTGCTCCCCGGCGCGCTGAGTTCGGTGACTACTTTATGGGTCCTGGACTGGAAGAACTTATAGAACAACTCACCCTGAAT GATCGGCGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGATGCAATGCCTATTATTAGGATCACACAGGCACATCTTCG CTCTGACTCACACTGTCCAGTTTGTAAGGAAAAATTTGAACTGGGCTCTGAAGCTAGAGAGATGCCATGCAACCATATTT ACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGCGTCGAGCTGCCACCTCAAGGT CATGTTAGCTCTCGTGGTGGCCGAAGTTTGGGAGGAAGGAACGTGAACAGCAGCACTGACGGCAATGATAGCTCCAGGGG CAGGGAGAATAATAACCATCAGAATCAAGGAAGGAGAAATCCGCTATCATTTTTGTGGCCATTCCGTTCTTCTTCGAGTT CTTCAAACAATAATCGTTATGCTGAGACCAGAGGAAGCAGCTCTTCAAACCCTCCTGACCAGAGTAATGGAACAAGTTAT GGTGGATGGCCTTTTGATAACTAAAAGCTCCATCTCTTCTGCTCTTTAATAATGGTTGTGATTTAAAATGAGAAGGAAAG AGTTTCTTAAAATTGTACTGTGAACTTAATCTCATGGAAGGAAGATGGTAGATAGAAGCTTGTTAAAATCTTTGTACATG GATGCAGCTGTTTGGTTAAGATGAATATCTCTTTGAAACTTTCACTTGTCATTATACAATTTGATTGTTTCTTGCTGCTT TTGGTTCCCTTAGGGGGATTAGCAGCAAGCACAAAGTGCTAGAATTAGGGGCTCAAGTGTGTTAGATGAAGCTTTTAACC AGTGAAGCCTTCGTTAGATAACAGCCTTATCAGAGTATTTGGTTAATTGTGCCTGATGCGGGTTGCACTTGAAAATGTTG TCAAGCTAATGAATATCAATGCATGTGTAACTAACTCAATATAAATTATATTTTTGGTTTGATGAATCAATATAAGTTAT ATACTGCATATAACTTATAGAGTTTAATTTGTAATGTTTAGTACCAAGCTTATATTAAGAGCCTGTTTGTGTGAGCCTTC CTATGACGCGTAACAAAATAAGCGCGTATAGTGTGGGCCACCGCTCACACATACAAGCACTAAGTGTGTGTTTGAACCAA CGTTTGTCACAATTGATTTTGCTGAAATTAGTTATAGTAAATGTGAGTTGAAAGTGAACTTATTAATGTTTAGATACATT ATGAAAAAGTGATTTTTGTTTGGGTTGTAAAATTTAATTGTAAAATCTCACAATTGATTATGTTTGACGCATAAACTACT CTTTGATTCTACCATAATTGATTGATTTTAAATTTGGAATCTGTTCTGCAAAATGAATCAAAC
CDS sequence (LotjaGi1g1v0053500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCAGCCAATTGTGCCTGAAGGGAGGGATGCCATTTGCCCTTA CTGTGATGGGGGGTTTGTACAAGAACTCAATGAGTTGCAAGGAGGTGTTGCACCATCGCAGTCGGGGGAGTTTCATCAAA TGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGAGCCGAGATTTGGGCTTATGGATGCTGTT GATAATTTCATGAGGCATAGAATGGCTGGAAGGCACCCAAACTTTGATGTTAGAGGGAGGTCTGGTCCTGCTCCTGCTCC TCCTCCTGAACAGAGCTGGGGTGTTTACAGTTCTGGTCCATATCTAATTTTCCATGGTCAAGTTCCTGGATTTACGTTCT CTAATGGCGGCCCAAGAGGTGCTCCCCGGCGCGCTGAGTTCGGTGACTACTTTATGGGTCCTGGACTGGAAGAACTTATA GAACAACTCACCCTGAATGATCGGCGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGATGCAATGCCTATTATTAGGAT CACACAGGCACATCTTCGCTCTGACTCACACTGTCCAGTTTGTAAGGAAAAATTTGAACTGGGCTCTGAAGCTAGAGAGA TGCCATGCAACCATATTTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGCGTC GAGCTGCCACCTCAAGGTCATGTTAGCTCTCGTGGTGGCCGAAGTTTGGGAGGAAGGAACGTGAACAGCAGCACTGACGG CAATGATAGCTCCAGGGGCAGGGAGAATAATAACCATCAGAATCAAGGAAGGAGAAATCCGCTATCATTTTTGTGGCCAT TCCGTTCTTCTTCGAGTTCTTCAAACAATAATCGTTATGCTGAGACCAGAGGAAGCAGCTCTTCAAACCCTCCTGACCAG AGTAATGGAACAAGTTATGGTGGATGGCCTTTTGATAACTAA
Protein sequence (LotjaGi1g1v0053500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGATHWCYECSQPIVPEGRDAICPYCDGGFVQELNELQGGVAPSQSGEFHQMPDLFDAIHAFMGQRGSEPRFGLMDAV DNFMRHRMAGRHPNFDVRGRSGPAPAPPPEQSWGVYSSGPYLIFHGQVPGFTFSNGGPRGAPRRAEFGDYFMGPGLEELI EQLTLNDRRGPPPAARSSIDAMPIIRITQAHLRSDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRV ELPPQGHVSSRGGRSLGGRNVNSSTDGNDSSRGRENNNHQNQGRRNPLSFLWPFRSSSSSSNNNRYAETRGSSSSNPPDQ SNGTSYGGWPFDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 6 | 36 | 31 | 7.5E-10 | ||
| PANTHER | 45 | 304 | 260 | 5.0E-118 | – | |
| PANTHER | 45 | 304 | 260 | 5.0E-118 | – | |
| Gene3D | 162 | 245 | 84 | 3.4E-20 | ||
| SUPERFAMILY | 178 | 245 | 68 | 6.63E-22 | – | |
| Pfam | 197 | 239 | 43 | 2.8E-11 | ||
| SMART | 198 | 238 | 41 | 1.5E-7 | ||
| ProSiteProfiles | 198 | 239 | 42 | 12.253 | ||
| CDD | 198 | 239 | 42 | 5.4512E-25 | – | |
| MobiDBLite | 246 | 333 | 88 | - | – | |
| MobiDBLite | 255 | 333 | 79 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi1g1v0053500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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