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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0075200 |
| Transcript ID | LotjaGi1g1v0075200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongator complex protein 1; TAIR: AT5G13680.1 IKI3 family protein; Swiss-Prot: sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1; TrEMBL-Plants: tr|A0A072VRS1|A0A072VRS1_MEDTR Elongator complex protein 1; Found in the gene: LotjaGi1g1v0075200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10855048..10859142) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGGTGTGTGTGGTTCTGATTCACTGCTCAGGAAAATTAAGGTTTGGGAAAGAGATTCAGGGGCGTTGCTTGCTTC TTCAGAGCTAAAAGCTTTTGCTGGAGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTTTATGACAGAA AGGCTGAAAATGAATGTCCCTTCATTGTTTTCTTCGAGAGAAATGGATTAGAAAGGAGCAAATTTAGCATCAATGGAGGA ATTGATGCAAAAGTGAAATTTCTCAAGTGGAATTGCAGTTCTGATCTTCTTGCAGGTGTTGTTGAATGTGAGAATTATGA TTCTATCAAGATTTGGTATTTTAGCAACAATCACTGGTACCTGAAGCATGAAATTAGATACTTGAAGCAAGATGAAGTCA GGATCATCTGGAATCCAGTAAAGCCTTTACAGTTAATTTGTTGGACTGTTAGTGGTCAGGTCACAGTTTACAACTTTGTC TGGTTCTCAGCTGTTACGGACAATTCCATCGCACTAGTCATTGATGGCTCCAAAATTCTTGTAACCCCACTTTCCTTATC CTTAATTCCGCCTCCTATGTACTTATTCAGCCTGAAATTTTCTTCTCATGTCCGTGGTATGGCAGTATATTGCAAAAACT CTAAGAATCAGTTAGCTGCATTTCTTTCAGATGGTAACTTATGTGTTGTAGAGCTTCCATCAATTGAAACCTGGGAAGAT CTAGAGGGGAAGGAATTCCGTGTTGAAGCCTCTCATGCTGAATTGGTTTTTGGATCCATTTTACATCTTGCATGGTTGGA TTCCCATACGCTATTAGCTGTTTCACATTATGGTTTCAGTCATAGTAATGGCTTACTCCAAACCTCAATGAATGAGGGAG GACTTAGAGGCTTCTATTTGCAGGAAATAGAACTTGAATGTTCTGAGGATTTTGTTCCAGAATTACTGACGTGCTCTGGC TGGCATGCAACAGTTTCAAAGCAAAATACAGTTGAAGAGCTGGTTGTTGGTGTTGTTCCAAATCCTGCTAGTAAATGTTC TGCTTATATGCAGTTTCCTGGGGGGGAAATCAATGAGTATGTATCAAGAATAGGGATTGGTGGAGGATCACTAGACCTAA AGCATCTAGGTTTTTCTGCAGCCTGCCCTTGGATGAGTGTAACACTAGTTGGTAGTGCTGGCTCATCAAAACCAGTGCTT TTTGGACTAGATGAGATTGGCAGACTGCATGCTGGCGGGGGGATAATTTGCAACAACTGTAGCAGTTTCTCATTTTACTC AAATTTGGCAGATCAAGTTATCACACATCTAATTCTTACGACTAAACAAGATTTGCTTTTCATTGTTGACATGGTCGATG TATTCAATGGGGAGTTGTTCTCAAAGTATGGGAATTTTGTCCAAACTAACAGCAGAAAAAAAGAAGAAAATGAAAACTAC ATAAATATCTGGGAGAGAGGTGCTAAAATTGTTGGAGTTTTACATGGAGACGAGGCTGCCGTTATACTGCAAACTACTCG GGGAAACCTAGAATGTATATACCCCAGAAAATTGGTTCTGGTTTCTATCATTAATGCCTTAGTTCAAAAGCGCTTTACAG ATGCATTAGTTATGGTTAGGAGGCATAGGATAGATTTCAATGTAATTGTCGATTACTGTGGTTGGCAAACATTTTCCCAG TCAGCTTCTGAGTTTGTCAGGCAGATTAACAATTTGGGTTACATAACTGAGTTTGTTTGTTCGATAAAGAATGAAAATGT CATAGATAAACTCTACAAAAATCATATATCTGTTCCCTGTCCCGAGATTGCTAATGCTATGCTAGTTGGAGACCTCCAGA ATTGCCCTGCTGATAACAAGGTTTCTTCCATTCTGATGGCCATAAGGAAAGCACTTGAGGATCACTGTACAGAAAGTCCT GCGAGAGAGCTTTGCATCTTGACCACTCTAGCACGAAGTGATCCTCCATTACTTGAAGATGCTCTAAAGAGAATAAAAGT TATCCGTGAACAGGAATTGTCTCATGCTGATGACCAGAGGAAAATGTCTTGCCCTTCTGCTGAAGAAGCTTTGAAACATC TTTTGTGGTTAGCCGATCCTGATGCTGTCTATGAAGCTGCCTTGGGTCTTTATGATTTAAATCTTACAGCTATTGTGGCA TTGAATGCTCAGAAAGATCCAAAAGAATTTCTTCCTTTCTTACAGGAATTGGAGCATATGCCTACGCTGTTAATGCAATA TAATATTGACCTTAGGCTGAAAAGGTTTGAAAAGGCGCTCAGACACATTGCTTCTGCTGGAGATTCTTATTATGATGATT GTATGGCACTTGTGAAAAAAAACCCTCAACTTTTTCCACTGTCTCTTCAACTTTTTACTGACCCTGCCAAGAGGATGCCG TTCCTTGAGGCATGGGGCGATTATCTTACTGATAAAAAGTGCTTTGAAGATGCTGCAACAATGTATTTGTCCTGTTTCAA TCTGGATAAGGCTATGAAGTCTTACCGTGCGGTCAATAACTGGAGTGGGGTGCTTACAGTTGCTGGGTTCCTCAATCTGG GAAAGGATGAAGTACTGCATCTTGCCGGTGAGCTTTGTGAAGAACTTCAAGCACTGGGTAAACCTGGGGAAGCTGCCAAA GTTGCCCTGGAGTACTGTGGAGATGTTAACACTGGTGTGAATTTGTTGATTTCTGCAAGGGACTGGGAGGAGGCTGTGAG GGTTGTTTTTATGCATAGAAGAGAGGACTTAATTAAAGCAGTGAAGGACGCATCTGGGGAATGTGCCAGCACACTTATCA ATGAATATGAGGAAGGGTTAGAGAAAGTGGGGAAGTACTTAGCCCGTTACTTGGCTGTTCGACAGAGAAGATTACTTCTT GCAGCAAAGCTCAGGTCTGAGGAACGTGCAGCCAGTGATATTGATGATGATGCCGCTTCAGAAACCAGCAGCAATTTTAG TGGAATGAGTGCATACACCACAGGGTATATACTTTCCCTTGATCTCATATATGTGCCTATATAGTTTGTTACATGTAGAA TATCAATTAAATGTGCTTGTGTATATTTTCTGAATCAGTTTTCTTTCACTCTGAGAATGGAGTTGTGGCCTTATATAACC AACCAGACATGATGCTCCTTCCATTAGTCTTGCATACATTAACTAAGCATATTGTGTTCTTATTCTTCCGAGATACTCTG TTGTTTTTTAAAATTGTAGTCTGCATGCAGTTATATTTGCAATAAATAAATTTATTGTCTTCATGTAGAACGATTTAGGC TCTGAATCTAAATGGGTATTTGAGTGAAGTTTGACAACGTGATTAGAGAATCATTTCACATTCATATTCATGTCTCTCTC TGCTGCCTGAAGTTTAAAATTTTTATTCTTTTCATTTTATTGTTATATCCATTTCTTCTATTGGGTCTTAGAGGCTTCAT TTATTTTTTATTTTCCTCCTTTCATCAACAGGACCAGGAAAAGTTCTGCTGCTTCTACCTATTCAACTGCAACCACAAGG GCAAGAGACGCTAGGCGTCAAAGGAAAAGAGGAAAAATCCGTCCTGGGAGGTATATTGACATGAGAACTTTTCAAATGTT GTTTTTCATTAGTTACAATCAGGAATTCAAATTGCGATCTGGAACCGCAATAGCGGCCGCAACGTTAAGGGTTTTGGAGT CCCGGCAGCAACATTGCAGCCACAATGCAGATCGTAATTTAAAACCCTGGTTACTATTTTGAAAATGAAGTAATAGTATT TTATTCACTGTTGTAGTGCTGATGAGGAGATGGCCTTAGTGGAGCATTTGAAAGGAATGTCTCTAACAGTGGAAGCTAGA CGTGAGCTGAAATCTTTGTTGGTTTCCCTTATGATGTTTGGAGAGGGTGAAATTGCAAGGAAGCTACAGCAAATGGGGGA GAACTTCCAATTTTCTCATATGGCAGCAGTTAGATTAGCTGAAGATACAATATCCAATGATACCATAAATGAGCAAGCAC ATACGCTAGAGCAATATACCCGAAAAGTAAAGGTTGAAATGCACAATTTAGAGGCTCTCTCATGGAGGATAAAAGTTTTT TTGCCCTACGAGTGA
CDS sequence (LotjaGi1g1v0075200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGTGTGTGTGGTTCTGATTCACTGCTCAGGAAAATTAAGGTTTGGGAAAGAGATTCAGGGGCGTTGCTTGCTTC TTCAGAGCTAAAAGCTTTTGCTGGAGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTTTATGACAGAA AGGCTGAAAATGAATGTCCCTTCATTGTTTTCTTCGAGAGAAATGGATTAGAAAGGAGCAAATTTAGCATCAATGGAGGA ATTGATGCAAAAGTGAAATTTCTCAAGTGGAATTGCAGTTCTGATCTTCTTGCAGGTGTTGTTGAATGTGAGAATTATGA TTCTATCAAGATTTGGTATTTTAGCAACAATCACTGGTACCTGAAGCATGAAATTAGATACTTGAAGCAAGATGAAGTCA GGATCATCTGGAATCCAGTAAAGCCTTTACAGTTAATTTGTTGGACTGTTAGTGGTCAGGTCACAGTTTACAACTTTGTC TGGTTCTCAGCTGTTACGGACAATTCCATCGCACTAGTCATTGATGGCTCCAAAATTCTTGTAACCCCACTTTCCTTATC CTTAATTCCGCCTCCTATGTACTTATTCAGCCTGAAATTTTCTTCTCATGTCCGTGGTATGGCAGTATATTGCAAAAACT CTAAGAATCAGTTAGCTGCATTTCTTTCAGATGGTAACTTATGTGTTGTAGAGCTTCCATCAATTGAAACCTGGGAAGAT CTAGAGGGGAAGGAATTCCGTGTTGAAGCCTCTCATGCTGAATTGGTTTTTGGATCCATTTTACATCTTGCATGGTTGGA TTCCCATACGCTATTAGCTGTTTCACATTATGGTTTCAGTCATAGTAATGGCTTACTCCAAACCTCAATGAATGAGGGAG GACTTAGAGGCTTCTATTTGCAGGAAATAGAACTTGAATGTTCTGAGGATTTTGTTCCAGAATTACTGACGTGCTCTGGC TGGCATGCAACAGTTTCAAAGCAAAATACAGTTGAAGAGCTGGTTGTTGGTGTTGTTCCAAATCCTGCTAGTAAATGTTC TGCTTATATGCAGTTTCCTGGGGGGGAAATCAATGAGTATGTATCAAGAATAGGGATTGGTGGAGGATCACTAGACCTAA AGCATCTAGGTTTTTCTGCAGCCTGCCCTTGGATGAGTGTAACACTAGTTGGTAGTGCTGGCTCATCAAAACCAGTGCTT TTTGGACTAGATGAGATTGGCAGACTGCATGCTGGCGGGGGGATAATTTGCAACAACTGTAGCAGTTTCTCATTTTACTC AAATTTGGCAGATCAAGTTATCACACATCTAATTCTTACGACTAAACAAGATTTGCTTTTCATTGTTGACATGGTCGATG TATTCAATGGGGAGTTGTTCTCAAAGTATGGGAATTTTGTCCAAACTAACAGCAGAAAAAAAGAAGAAAATGAAAACTAC ATAAATATCTGGGAGAGAGGTGCTAAAATTGTTGGAGTTTTACATGGAGACGAGGCTGCCGTTATACTGCAAACTACTCG GGGAAACCTAGAATGTATATACCCCAGAAAATTGGTTCTGGTTTCTATCATTAATGCCTTAGTTCAAAAGCGCTTTACAG ATGCATTAGTTATGGTTAGGAGGCATAGGATAGATTTCAATGTAATTGTCGATTACTGTGGTTGGCAAACATTTTCCCAG TCAGCTTCTGAGTTTGTCAGGCAGATTAACAATTTGGGTTACATAACTGAGTTTGTTTGTTCGATAAAGAATGAAAATGT CATAGATAAACTCTACAAAAATCATATATCTGTTCCCTGTCCCGAGATTGCTAATGCTATGCTAGTTGGAGACCTCCAGA ATTGCCCTGCTGATAACAAGGTTTCTTCCATTCTGATGGCCATAAGGAAAGCACTTGAGGATCACTGTACAGAAAGTCCT GCGAGAGAGCTTTGCATCTTGACCACTCTAGCACGAAGTGATCCTCCATTACTTGAAGATGCTCTAAAGAGAATAAAAGT TATCCGTGAACAGGAATTGTCTCATGCTGATGACCAGAGGAAAATGTCTTGCCCTTCTGCTGAAGAAGCTTTGAAACATC TTTTGTGGTTAGCCGATCCTGATGCTGTCTATGAAGCTGCCTTGGGTCTTTATGATTTAAATCTTACAGCTATTGTGGCA TTGAATGCTCAGAAAGATCCAAAAGAATTTCTTCCTTTCTTACAGGAATTGGAGCATATGCCTACGCTGTTAATGCAATA TAATATTGACCTTAGGCTGAAAAGGTTTGAAAAGGCGCTCAGACACATTGCTTCTGCTGGAGATTCTTATTATGATGATT GTATGGCACTTGTGAAAAAAAACCCTCAACTTTTTCCACTGTCTCTTCAACTTTTTACTGACCCTGCCAAGAGGATGCCG TTCCTTGAGGCATGGGGCGATTATCTTACTGATAAAAAGTGCTTTGAAGATGCTGCAACAATGTATTTGTCCTGTTTCAA TCTGGATAAGGCTATGAAGTCTTACCGTGCGGTCAATAACTGGAGTGGGGTGCTTACAGTTGCTGGGTTCCTCAATCTGG GAAAGGATGAAGTACTGCATCTTGCCGGTGAGCTTTGTGAAGAACTTCAAGCACTGGGTAAACCTGGGGAAGCTGCCAAA GTTGCCCTGGAGTACTGTGGAGATGTTAACACTGGTGTGAATTTGTTGATTTCTGCAAGGGACTGGGAGGAGGCTGTGAG GGTTGTTTTTATGCATAGAAGAGAGGACTTAATTAAAGCAGTGAAGGACGCATCTGGGGAATGTGCCAGCACACTTATCA ATGAATATGAGGAAGGGTTAGAGAAAGTGGGGAAGTACTTAGCCCGTTACTTGGCTGTTCGACAGAGAAGATTACTTCTT GCAGCAAAGCTCAGGTCTGAGGAACGTGCAGCCAGTGATATTGATGATGATGCCGCTTCAGAAACCAGCAGCAATTTTAG TGGAATGAGTGCATACACCACAGGGACCAGGAAAAGTTCTGCTGCTTCTACCTATTCAACTGCAACCACAAGGGCAAGAG ACGCTAGGCGTCAAAGGAAAAGAGGAAAAATCCGTCCTGGGAGTGCTGATGAGGAGATGGCCTTAGTGGAGCATTTGAAA GGAATGTCTCTAACAGTGGAAGCTAGACGTGAGCTGAAATCTTTGTTGGTTTCCCTTATGATGTTTGGAGAGGGTGAAAT TGCAAGGAAGCTACAGCAAATGGGGGAGAACTTCCAATTTTCTCATATGGCAGCAGTTAGATTAGCTGAAGATACAATAT CCAATGATACCATAAATGAGCAAGCACATACGCTAGAGCAATATACCCGAAAAGTAAAGGTTGAAATGCACAATTTAGAG GCTCTCTCATGGAGGATAAAAGTTTTTTTGCCCTACGAGTGA
Protein sequence (LotjaGi1g1v0075200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGVCGSDSLLRKIKVWERDSGALLASSELKAFAGAVLEWMPSGAKIAAVYDRKAENECPFIVFFERNGLERSKFSINGG IDAKVKFLKWNCSSDLLAGVVECENYDSIKIWYFSNNHWYLKHEIRYLKQDEVRIIWNPVKPLQLICWTVSGQVTVYNFV WFSAVTDNSIALVIDGSKILVTPLSLSLIPPPMYLFSLKFSSHVRGMAVYCKNSKNQLAAFLSDGNLCVVELPSIETWED LEGKEFRVEASHAELVFGSILHLAWLDSHTLLAVSHYGFSHSNGLLQTSMNEGGLRGFYLQEIELECSEDFVPELLTCSG WHATVSKQNTVEELVVGVVPNPASKCSAYMQFPGGEINEYVSRIGIGGGSLDLKHLGFSAACPWMSVTLVGSAGSSKPVL FGLDEIGRLHAGGGIICNNCSSFSFYSNLADQVITHLILTTKQDLLFIVDMVDVFNGELFSKYGNFVQTNSRKKEENENY INIWERGAKIVGVLHGDEAAVILQTTRGNLECIYPRKLVLVSIINALVQKRFTDALVMVRRHRIDFNVIVDYCGWQTFSQ SASEFVRQINNLGYITEFVCSIKNENVIDKLYKNHISVPCPEIANAMLVGDLQNCPADNKVSSILMAIRKALEDHCTESP ARELCILTTLARSDPPLLEDALKRIKVIREQELSHADDQRKMSCPSAEEALKHLLWLADPDAVYEAALGLYDLNLTAIVA LNAQKDPKEFLPFLQELEHMPTLLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMALVKKNPQLFPLSLQLFTDPAKRMP FLEAWGDYLTDKKCFEDAATMYLSCFNLDKAMKSYRAVNNWSGVLTVAGFLNLGKDEVLHLAGELCEELQALGKPGEAAK VALEYCGDVNTGVNLLISARDWEEAVRVVFMHRREDLIKAVKDASGECASTLINEYEEGLEKVGKYLARYLAVRQRRLLL AAKLRSEERAASDIDDDAASETSSNFSGMSAYTTGTRKSSAASTYSTATTRARDARRQRKRGKIRPGSADEEMALVEHLK GMSLTVEARRELKSLLVSLMMFGEGEIARKLQQMGENFQFSHMAAVRLAEDTISNDTINEQAHTLEQYTRKVKVEMHNLE ALSWRIKVFLPYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 1132 | 1132 | 0.0 | ||
| PANTHER | 12 | 1129 | 1118 | 0.0 | ||
| Pfam | 12 | 767 | 756 | 5.6E-192 | ||
| SUPERFAMILY | 13 | 277 | 265 | 1.28E-9 | ||
| MobiDBLite | 971 | 1028 | 58 | - | – | |
| MobiDBLite | 977 | 1011 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Elongator holoenzyme complex | A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes. |
Expression pattern of LotjaGi1g1v0075200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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