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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0206000 |
| Transcript ID | LotjaGi1g1v0206000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|I1N1P3|I1N1P3_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0206000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44788719..44795490) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGAAGAGGAACACGACCATCACACCTCCCCTGAGTTCGACGACCAAGCTAAGAAGAAGAAGCTTCGCAAGAGGAA AAGATCTCGCAAAACCGAGCATGAAGTAGAACAAGAAGAAGTAGACAATGGGAACGCAGAATCTCCGGAGGAGAGTGAGC AACCACAAACTGAACCAGAAGAACAACAAGAAGTAGAAGTAGAAGAAGACGGTGATGATGAAGAAGAGGAAAAGGTGGAG ACCGCTTCTGGGTCTGGAATCATGAGCACCCTGTCTTTTTCGTCTCTGGGTTTGTCTCAACCTACTTCTAAGGCTATTAT GGACATGGGTTTTCAAACCATGACTCAGGTAACGAATATATATATATTTTTTTTCTGTTTACTTTTCTTAATAAAATTAA TTGTGAGTGGTAGAATTTTTAAGTTATCATATTGGCAATGATAATAATAATAATAGAGTGAAGGTTATAATTTATGTGAA TGTTATGAAATTTGTAGATTCAAGCTAAGGCGATTCCGCCGCTATTGATGGGAAAGGATGTTTTGGGTGCTGCTAGGACA GGTTCTGGAAAAACTCTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCTCGCAATGGAAC TGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGGTAATAGTTGTTGCTCTTCATGCTCATATTTCCTCTT TTATTGGATGTGGCTCTGGTTGTGACTAATCTCACCACTTATTTTTCAGACACATGCTGTGGCTAAGGAACTGCTCAAGC ATCATTCGCAAACTCTTGGGTTGGTAATTGGGGGTGCAGGTAGAAGGATAGAAGCTGAGCGCATTGTCAAAGGGGTAAAT CTATTGGTAGCAACGCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAGGTAAA GTTATGCATCTTTAATTCAGTTGTTTTAATATGTTCATATTTGACTGCTGACATTGATGGCACTTGAATATTAATAGTGA ATATTTATATTTACATAAGCAATTTGTACAGTGTGTTTACAAGATGATCGAATCAATCCCTTAAGTTTATGGATTAAGAT TTCCTAACTAAGGTAACTAGGATAAAATCAAATCTTAATAACATCTCAACACTCCTCCCCAAGCTGGAGTATAGATATAT CCTAGGACCTCGTAAAGATTTATTGAAAATATTGGCAAGCTGATCCTCGGAGCAAACAGAGGAAGTTCTTATGAACTCCA GAGGCTCCTTTCTCTGAGGAAAAGACAGTTGACTTCTAAATATTTTGTCCTCTACAAAACTAATTGATTATCAGTTTATC ACACATTAGATTAATGGGACCAAACTTGCTGAACCACAACTCTTGAAGTAAATAAGTGCTTCAGCCACAATAGCTCATAT GTTTTGAGCCATAGTTTGATACTTGACCTGGCACTTTGCACACTTTGCTTCTTACTCTTTCACGAAATAAGATTTTCACT AGGAAAACCAATGTAGTGATTTCATAGGTAAGTCTATAATTCTATATTCTAGTTCTAGTTCTTACTCTGAGCTTTTGCAT GATTTGGCAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAATCCAACTTTGAGGACGAAATGAAGCAGATCATTA ATATACTCCCGAAGGTATTGAAACTGTTTGAACATGTTTCTTTTTCCTCCTTCCCCTCCTCAATTATGCAATGAGGTTTT GAAATTTCAATGAAGCCACGAGATCGCATCATGTCCAACCACATCGTCTGTGTGTGGATGGGATTATTTAACTGGTGAAC AACAAAAAAAAGTTCCTAAAATATAATTGAAGGGAAAAGTACATTGGACAATGGATGAAAATTTATGACATGATAAAGAA ACTAAAATGTTTTCAAGCTCCAGAAGGTTCAGAGCACAGTCTACATGTTTTTTTTTACCAATATGTGATTATTTTCTTAT CTCCAACTACATTTAGAGTAGTGAAAGTTTCCATTCCATAAAGTAGTCTTTTTCTGTTAGCATTTTTGGCGTTGGCTACT CTGTAGTCTGTACCACTATCTGTGGTTAACTCTTTCAATCTGTGTTAAGTTGTTGACTAAATGCTGTCTGGTGAGTATGA ATTTTGAATATCAGCAGCTGCCTGCAATTTAACTTGTAACATTCTGAAAATACTGGTGTTTTTCTCTGACAAAGAAGTAG TGCTTTCTTCTGATATCCATATTATTTGAGTATCAATGTTTCTTCTTAAGGTTCCAAATATTTGCGGTCATCTGGCTGAC ATTTTTAAGGTTTGGGGCCTAGCTTTTCGGGCTGAGATGTGGTTGCTATATTTCTTACTTAATTTTCCCCATCTTTTCTG GAATGTATTAATCTAGCTTTAAGTTTCTATCTTGTTTTTGGTTTTCCTAATATTTTGAGTATGGCTAATTATTCTGTTTC TCATTTAACAGAAAAGGCAAACAGCTCTGTTTTCAGCTACACAAACAAAAAAGGTTTGTCCTTCAATTTCCATGCTTCTT CACTCCTATCCCTGAATCAAATCTTGATTCAATTTCGTTCTCTTGACTCAACTCAAGTTTAATAACAGTCATATAAATAA CACTCAATTTTCCCCCCTTGATATACTTGAAGTGAAAGCTTTATAATAAATGTTATATTGGAATGTATGAATTTGGGAAT GCTAGCATATTGCCTACTTGCCTGTGCTTTTGACTAAATTTTCCCTGTTGCACTTCAGGTTGAGGATCTTGCCCGCCTGT CGTTTCAGACACCTCCTGTCTATATTGATGTAGATGATGGGAGGAAAAAGGTGGTACTTCTCGACTTGTATCATCTTTGA AGTTTGTTTTTGTAGAATTATCATAGTTATCTGACAAGATCCTCATCAATGTAGGTCACAAATGAAGGATTGCAGCAGGG CTACGTTCAAGTTCCCTGTGACAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGG TCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTACACTGGGCTGGAGTGCTTGAATATTCAT GGAAAACAAAAGCAGCATACCCGGACAACTACCTTCTTTAGCTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGTACTGA TGTTGCTGCTCGTGGACTTGACATACCTGATGTGGTATATTAATTTTTCTTACTAAGTTCCATGAATTTTTCCGACCTGT AAATGTGGTTGGTTGAGTCAATAAGTTGTATCAGCTTTTTATAGTTCAGTCAAAGCTCTTCAGTTGGAACTAGCAAAAAT AAATCACAAGTTCACAACCGCCTGCAAATAAATATTAAAAGAACATAATATGTACTTTCATTTTTAAAAGTAAAAAAATT TAGAGGTGTTGGAGCATACGAAAAGAAGTTTTATAGAGAAGAGAATGAAATTAGGGAATTTCTGTGGTACTCTAGAACTG GTAATCTTGCTTAGCTGGTAATAGTATTGTTGTTGTATAGGTGACTTCTGGATGAATTTGGGTACAGAATTAAGTGGTTG GTTCAAGGGTGCCAAAATAATAGGAGTAGCTAAGAATCTCCAGAAAGAAACATTATAGCAAAAGATAAGATACCTTATAG GTCTGGACCAGAGATTTAGATGAAAAATAGGAATAAACTGTAGTCTGTAGATTACTTTTGCTGTAACCTTCACCAGCCGT GGAACTCAGGTTTGGGAAGTGAAAGAATCGATACATCAGGGTAAGTCTTTAGGAATTTGTGTGCCTTACCTCTATGGATT CAACCAGATACTCCTTATGCTCCTTTCTGCTTTTTTTATTTTCTTCTTCTGGCAATTCTAATAGAGGGATATGCCCAAAC CTGCACTTGTCAATTAGCCCCTAACTAGCAACTAGTAACTAGTTTTGGCCTTCACTATCATTTTGTAACCGTTTTGTGCC CAATTGGTTCAGTTGGTCTCTCCTATACTCTTGCCTTATACTTTTCAAACTGGGGCCTAATTTTCTACTAGATAACTATA TTAGCTAGTACAAAAAATCTGAACATACAGGAATAGCACATCAACTAAGTTAAGCTTACTGGATTTCCTACATTCCCAAT GACAAACCTCTTAATCAGCCATTACCGAGCTACATAACAAGGTTAAGAAGACTAAATTTGCCCCTAATGCTAGTGTACAA TCAATACTTTTCGCGGGCACTTTACTCCTGAAATCCTTGAAATGATGTATATGAAAGTTCTCACATGTGTTGGCACTTAT CCTAGTTCAAACATTCCCCAGTGATACCAGAGCTTCCACCGTGACTAGGTAGCATATGGACAGTGTAAGAATAAATGCCA ACAAGTCTCATACATTTGGAGAGTGACTCTTTGTCTGGTCGTTCAACAAGTCATTTATTTTGTTTCTATAATCTACCGCA ACGTTCATTCTAAAATGCACCAGAGTCTAACTGAAATACTTAGCAATAGAATCAGACTTCAATTTCCAAAGGAAGTTATC AACAGAGATGCTGGTTTTTTTTTTACCTATCATGATAATCCATGTACAGCTGCGGAACCATAAACTGATGTAAATTTTAT GTACTTAGGAATTAGGGTTTGTTTAGAACAGCATTTCTAGAGGTTATATAAATTTATCTTATGAGTGAAGCATTTAAACA GATGTTTTATTAAGCTTATAAAATAGCTTATGACGGTACCTATAAACTCTTTAGAGCGATACACATATGATTAATTAAGC TTTGTTTTTATAAGCTTTTTAAATAAGTGTTTAATTGAGCTATTTACCTGAATGTGCCCTTAGTTTTTGTTTTATGACAA TGATAAAACTGAACACATTTTGATTTAAATGTCGTATTTATGTTACAACTATATTCTGTTAATTTGCAATCATTAAAGGG CATGCAACAGATTAACACTTCTCTCCTTTTCTGCTTCATGTAGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAA AGGTACTCCCTTTATTGATGGTCACTACTATGTTTTACCATTTATTTATTTGCATTCTTATACTTAATGCACTGTGTAAC ATGCTATATGATACTGCTTCCAGGAATATATCCATAGGGTTGGTAGAACTGCTCGTGGGGAAGGTGGAAAGGGAAATGCT TTACTTTTCCTAATTCCTGAAGAAAAGAATTTTCTTCTTTATTTGAAGGTCAGTTTCTCTCTCTTTTTGATAGCTGGGGT TCTAATGTTATGCACTTGCTTTATCAATGGTTACTGGAGGAAACCTCAAGGGTTTCATGCATTTATTAGAGAAGGGAAAG CTGTAATTTTGGTTTTTGTGCAAGTGATAAAATTAGGTTGTGAAATGAAACTATAATATAATGTAGGTTGCTGAAAACTT ATTCTTAGACCATCCTGAATTTTGTATGTATGTTTAATCTCAGGCAGCAAAGGTTCCTGTGAAAGAGTATTCATTTGACA ATAAGAAGCTTGCAAATGTACACTCTCAAATGGTATGTTCCTGCTTCCTGAAGTGCTAATTATAAAAACTAGTATGGTAA CCATTGCAGCTTATCTCACAAAGTAGCATCTGGATTATGCAGGAGAAGTTGGTGGCTGTCAATTATCATTTGAATAATAT GGCTAAGGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTG ATTTACAGGTAAACCTTTCTCCTTGCATTTTACATTATCATTATATACTTCAGGGTTTCCTGAACTGTATGGATATCCAT TTCTATCAAGTAGATATACGAATCTGAATTGATCTAAAATCTGAAGTTTTATTAGTGTATACAGTCATGACATTCCTGAT TTAAATCAACTGCCTTTGGGACTTCTTGTATTTTCCTTTCATTTTAATCTCAAATCAAACTTTAGAATAGGTACAAAGTA TGTTGGATGAGCGAGTAATATAAAAATATATTTTTGAAACAAAATAATTAAAATGGCAACATAAAAAAAGATATATGTGC AAATTCCTTGTTAAGGTTTCATCGTATGTTAGAAATTCAGTTACTTACATAAAATTGTAGATTCTAGGATAGAAGATAAA TAGAGGGGTTGCTACAAGTTATTGATAACCTTCCCTTGTTTCCCTTTGTTACCTATACCCTATGCCACTTTTTAATTCTC TCCTATTTCTTTCTCATAGATCAGGTCAATTCACCTAACATTTTATTTTCACGTCAAATATTGTCAATCATAAGGAAAGG CTAGCTGCAAGAGTTGTAAAGCACTGCACCTTGGCTTTGCAATTAGCTATTTGCAGAAATTAATAATTTTCTTTATTTAG TAGGAGCAATTAGTAAAACTCAAGGGTTTTTGAAAAAATTGTGTATTCATGGACAACCCTGTATTATTGTGGCTTATGAA GTAACTGTTACATACCCTGCTACATCCATTGAAGTTACCGGTAGAGAAACAATCCCATGTATCAAACTTCTAGTCAAATT GTTGGATAGTCAAATCATGTATAATATTAACTACAATTACAACATATGATAGTAAAAGTTACTGTTCTTGTGCAGGCTGT TGCTACTTCATTCTGTTTTTCAAACCCACCGAAGGTAAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAA TACGCAAAGTTGAAGGAAGAAGACATTGATTCCGCAAAAGCAATGCTTGTAG
CDS sequence (LotjaGi1g1v0206000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACGCAGAATCTCCGGAGGAGAGTGAACGGTGATGATGAAGAAGAGGAAAAGGTGGAGACCGCTTCTGGGTCTGG AATCATGAGCACCCTGTCTTTTTCGTCTCTGGGTTTGTCTCAACCTACTTCTAAGGCTATTATGGACATGGGTTTTCAAA CCATGACTCAGATTCAAGCTAAGGCGATTCCGCCGCTATTGATGGGAAAGGATGTTTTGGGTGCTGCTAGGACAGGTTCT GGAAAAACTCTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCTCGCAATGGAACTGGTGT TGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCTAAGGAACTGCTCAAGCATCATTCGCAAA CTCTTGGGTTGGTAATTGGGGGTGCAGGTAGAAGGATAGAAGCTGAGCGCATTGTCAAAGGGGTAAATCTATTGGTAGCA ACGCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGA AGCAGACAGGATATTGGAATCCAACTTTGAGGACGAAATGAAGCAGATCATTAATATACTCCCGAAGAAAAGGCAAACAG CTCTGTTTTCAGCTACACAAACAAAAAAGGTTGAGGATCTTGCCCGCCTGTCGTTTCAGACACCTCCTGTCTATATTGAT GTAGATGATGGGAGGAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTACGTTCAAGTTCCCTGTGACAAGCGTTTTGT TGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCC ATGCAGATCTTCTCAAGTACACTGGGCTGGAGTGCTTGAATATTCATGGAAAACAAAAGCAGCATACCCGGACAACTACC TTCTTTAGCTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGT GGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACTGCTCGTGGGGAAG GTGGAAAGGGAAATGCTTTACTTTTCCTAATTCCTGAAGAAAAGAATTTTCTTCTTTATTTGAAGGCAGCAAAGGTTCCT GTGAAAGAGTATTCATTTGACAATAAGAAGCTTGCAAATGTACACTCTCAAATGGAGAAGTTGGTGGCTGTCAATTATCA TTTGAATAATATGGCTAAGGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATG TTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTTCAAACCCACCGAAGGTAAATCTGAACATAGACAGC AGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTTGAAGGAAGAAGACATTGA
Protein sequence (LotjaGi1g1v0206000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTQNLRRRVNGDDEEEEKVETASGSGIMSTLSFSSLGLSQPTSKAIMDMGFQTMTQIQAKAIPPLLMGKDVLGAARTGS GKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKHHSQTLGLVIGGAGRRIEAERIVKGVNLLVA TPGRLLDHLQNTKGFIYKNLKCLMIDEADRILESNFEDEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYID VDDGRKKVTNEGLQQGYVQVPCDKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKYTGLECLNIHGKQKQHTRTTT FFSFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEKNFLLYLKAAKVP VKEYSFDNKKLANVHSQMEKLVAVNYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVATSFCFSNPPKVNLNIDS SASKHRKKIRKVEGRRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 12 | 487 | 476 | 5.7E-199 | – | |
| PANTHER | 12 | 487 | 476 | 5.7E-199 | – | |
| Gene3D | 25 | 242 | 218 | 6.1E-72 | – | |
| SUPERFAMILY | 27 | 239 | 213 | 3.29E-62 | ||
| ProSiteProfiles | 32 | 60 | 29 | 10.665 | ||
| CDD | 43 | 240 | 198 | 9.43176E-137 | – | |
| SMART | 51 | 256 | 206 | 2.7E-55 | ||
| Pfam | 56 | 227 | 172 | 6.4E-46 | ||
| ProSiteProfiles | 63 | 238 | 176 | 30.88 | ||
| SUPERFAMILY | 178 | 388 | 211 | 8.91E-45 | ||
| ProSitePatterns | 184 | 192 | 9 | - | ||
| Gene3D | 249 | 492 | 244 | 4.4E-50 | – | |
| ProSiteProfiles | 252 | 422 | 171 | 19.671 | ||
| CDD | 253 | 383 | 131 | 1.81226E-50 | – | |
| Pfam | 268 | 372 | 105 | 1.4E-23 | ||
| SMART | 292 | 373 | 82 | 4.7E-24 | ||
| SMART | 413 | 476 | 64 | 3.5E-28 | ||
| Pfam | 414 | 474 | 61 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0206000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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