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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0328100 |
| Transcript ID | LotjaGi1g1v0328100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|Q0DIV0|HEMH2_ORYSJ Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|V7AZZ3|V7AZZ3_PHAVU Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78274776..78277840) extracted from Lotus japonicus Gifu genome v1.2.
TTGACTCTATTATTTTTCTACCTTACTGCACAGGCTGAAGAGTTGAGGAAATATCTTTGGGCAAAGAATGTCCCTGCTAA AGTGTATGTTGGCATGCGGTACTGGCATCCATTCACTGAAGAAGCTATTGAACAGGCATTTGATCATCCTTTTCTAATTG CATAATGTAAACTTGAATAGAATTTGATCAACATTATGCCATTGGTGGATTTTCTCAGTCTCACCTGTTTTCATCCTACA GTTTGAGTTAAAAAATGTTACTGTATGCTTAATTCTTAAATAAAGAAGCATGCAAAATTTTCAAAATAGGGCTACTCAAA GCAATTGTTTTTAATCTGCTTTATTGAGTGGCTTGATGCAGCCGCTACTTTTATCCTTATGAAGGTATTTCGTCATGGAT AGCTTAGATCTGAGTTCTAAACTTGTTGTTAACCCACTGGTACAACCGTACCAGTTAGCTTGAATTATCTTTGTGCACAC AATCACACCTGTCAATGTGAAAAAAAATTGAGCTCTGACTATTAGAAACTATTGCTTTTCCTAAGGTATAAAATTTGTTC TTGTTGGGACTATTGAAGGTTGGTATGTCAAAAACTCATTCAATTTTATGCAGCATAACAGGTTATTGTATGCTTCTTTC TTTAAACTGATTCCTGCCTTAAAGTTATGTCAAAGTCATTTGCCTTTGAAAGGTGAACTACTATTTTGTGGGAAGTAATA ATGCAGGCACAGAAACAGGTCATGTTAATAGTATTTTTATTTTTAAAATCTCTTGATAAAAGAAGAAATTTTTAAAATGA TCGAACAAACCAGGAATTCCAAAAGTTAGATCTTGTAGTTTTATTGGTACAATTTTACATAATTTGATCTGTTTGTGACT TCTTCCAAACCTGTTTATAATTTAGTTTTCCTTTAAATAAACTGTTCAGATTAAAAGGGATGGAATTACAAAGCTTGTCG TTCTTCCACTTTATCCACAATTTTCCATATCAACCAGTGGCTCAAGCTTACGCCTACTAGAGAATATATTCCGGTGATTA CTATAAGAATATTGTTATCACCTTTATTATACATCAAATATATAAATTATTGAGCATTATTTAATGTTATGAATTGTTAA TTGGTTCTTCAGAGAGGATGAGTATCTGGTCAACATGCAGCACACAGTAATACCTTCGTGGTATCAACGTGAAGGGTACA TAAAAGCCATGGCAAATTTAATTGAAAAGGAGCTGAAGAGTTTTGACTGCCCCGAGGAGGTGGAGTTTTTTTTTTCTTTT TCTTTGTTAGTTTTAATGACTTAGAAAAGAAAGGGTGGTTCCTTGAATTTTTCTGTTGTAATTGACTAATTGTCATTCTT ATCGTATAAATGAAAGTTAGCATCATACTTTACACAGTCAACATTTCAGTTATTTCTGGTTTGGGTAACAGAAAGAGTAA CCTACCATACTTGGTTTGATTAGCATTTATGGTATCTTGGAGATATTGGAAATTTGGAATGCCATTATGCCCAAAAAAAT TGTTGTTTCATAGAGATTTCTATGTCAACAATTCTGGTTATTCCTTTTAATCTTTGTTTGGTGTTGCTGAGGAGTACTTC CTGCAATCAAGGTACTCTTGTTTAACTGTTAGCGTGTATGCTTCTGAGCCCGAGCAGTTCATGCCCAGTGCAGGTCATGA TGTTCTTTAGTGCACATGGCGTGCCTCTTGCTTACGTGGAAGAAGCTGGCGATCCATACAAGGCAGAGATGGAGGAATGT GTGGATTTGATCATGGAAGAACTTGAGACAAGGAAGATAACTAATGCCAGCATCCTTGCTTATCAGGTAACTACTTTGTC TTTCTGTGATTGTTTCTTCTGTTTCGTCAACTTTTTCTTAGATTGTGTTAGTTTACTACTATATTGTCCTCTAATAAGTC ATAATTGGAAATTCCATCAATTGAATGCTCCACTAGGCAATAATGTTTTGAGCAGATCATGAAGTTCACACTGCTTTCAA TACCACTTTCTATGTATTTCTAACAATTGACTATAATTCTTTTTACAGAGTAGAGTTGGACCAGTCGAATGGTTAAGACC CTATACAGACGAAACAATAGTTGAACTTGGAAAAAAGGGAGTGAAAAGTCTGCTGGCTGTTCCAATTAGGTAAATGTTAG TTTACTCCTATCTCAATCATCTTCCTTCTTTCTTTATCTCTCTCCCCCTCTTTCTCAAACCTGCAAACAGAGTAAGCGAC TAATATTTTTTCACTCGTGCTTAATTCACAGCTTTGTCAGTGAGCATATTGAAACTCTTGAAGAAATTGATGTTGAGTAC AAAGAATTGGCTCTACAATCCGGTATAGAAAAGTGGGGCCGTGTTCCAGCTCTAGGATGTGAACCCAGCTTCATTTCTGA TTTGGCAGACGCCGTTATTGAGAGTCTCCCATATGTTGGTGCCATGGCCGTTTCAGACCTTGAAGCACGACAGGTACTCT TTCCAACTCCCATATACACATATCTTTCATACAAGAAAATAATTATCTACTGTTCTCCTTGGAGTTGTTCCAATTTTATC GGATTTCCCCTAAGGGTATTGTAAGTGGCATAGTGGTCTTGCTTTGATTATGTTTAAATTGTTCCCACAATCTGTTGTTT GATCGAGCTCGATGACATTGCCGACATCACTTAGTGGATAAGGATTTTGGCGTTGTTGCTGTAGTTCTCTTTGGAGTTGT TATTGAAAGACACACTTCTTCCCTTTCAAACACTTCTCATAGAGATTTTTGTAATAGTATATGTTGGAGTTACATTGTTG CATCTTGTGATCTAATAAAAAAGTTTGGACTCTTTGGCAGTCATTGGTTCCCTTGGGAAGTGTAGAAGAGTTATTGGCTA CATACGACTCGAGACGTAGGGAGTTGCCACCGCCATTTGTAGTGTGGGAATGGGGTTGGACAAAGAGTTCTGAAACTTGG AATGGAAGAGTAGCTATGCTGGCTTTCCTGCTTCTTATGTTTTTTGAAGTCACTACAGAAGGGAGTTTTCTGCACCAGTG GGGAATATTGCCCTCACTTAGGTGA
CDS sequence (LotjaGi1g1v0328100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTACTGGCATCCATTCACTGAAGAAGCTATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTCGTTCTTCC ACTTTATCCACAATTTTCCATATCAACCAGTGGCTCAAGCTTACGCCTACTAGAGAATATATTCCGAGAGGATGAGTATC TGGTCAACATGCAGCACACAGTAATACCTTCGTGGTATCAACGTGAAGGGTACATAAAAGCCATGGCAAATTTAATTGAA AAGGAGCTGAAGAGTTTTGACTGCCCCGAGGAGGTCATGATGTTCTTTAGTGCACATGGCGTGCCTCTTGCTTACGTGGA AGAAGCTGGCGATCCATACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAACTTGAGACAAGGAAGATAA CTAATGCCAGCATCCTTGCTTATCAGAGTAGAGTTGGACCAGTCGAATGGTTAAGACCCTATACAGACGAAACAATAGTT GAACTTGGAAAAAAGGGAGTGAAAAGTCTGCTGGCTGTTCCAATTAGCTTTGTCAGTGAGCATATTGAAACTCTTGAAGA AATTGATGTTGAGTACAAAGAATTGGCTCTACAATCCGGTATAGAAAAGTGGGGCCGTGTTCCAGCTCTAGGATGTGAAC CCAGCTTCATTTCTGATTTGGCAGACGCCGTTATTGAGAGTCTCCCATATGTTGGTGCCATGGCCGTTTCAGACCTTGAA GCACGACAGTCATTGGTTCCCTTGGGAAGTGTAGAAGAGTTATTGGCTACATACGACTCGAGACGTAGGGAGTTGCCACC GCCATTTGTAGTGTGGGAATGGGGTTGGACAAAGAGTTCTGAAACTTGGAATGGAAGAGTAGCTATGCTGGCTTTCCTGC TTCTTATGTTTTTTGAAGTCACTACAGAAGGGAGTTTTCTGCACCAGTGGGGAATATTGCCCTCACTTAGGTGA
Protein sequence (LotjaGi1g1v0328100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLENIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIE KELKSFDCPEEVMMFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKITNASILAYQSRVGPVEWLRPYTDETIV ELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALQSGIEKWGRVPALGCEPSFISDLADAVIESLPYVGAMAVSDLE ARQSLVPLGSVEELLATYDSRRRELPPPFVVWEWGWTKSSETWNGRVAMLAFLLLMFFEVTTEGSFLHQWGILPSLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 234 | 234 | 9.97E-72 | – | |
| Gene3D | 1 | 228 | 228 | 2.1E-84 | – | |
| PANTHER | 1 | 306 | 306 | 6.7E-145 | ||
| Pfam | 1 | 227 | 227 | 7.3E-75 | ||
| TIGRFAM | 1 | 228 | 228 | 1.6E-77 | ||
| Gene3D | 66 | 209 | 144 | 2.1E-84 | – | |
| CDD | 73 | 211 | 139 | 4.52282E-57 | ||
| ProSitePatterns | 94 | 115 | 22 | - | ||
| SUPERFAMILY | 272 | 312 | 41 | 2.35E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ferrochelatase activity | Catalysis of the reaction: protoheme = Fe(2+) + protoporphyrin IX. | ||
| Biological process | Heme biosynthetic process | The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors. |
Expression pattern of LotjaGi1g1v0328100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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