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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364300 |
| Transcript ID | LotjaGi1g1v0364300.5 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Branched-chain-amino-acid aminotransferase; TAIR: AT1G10070.1 branched-chain amino acid transaminase 2; Swiss-Prot: sp|Q9M439|BCAT2_ARATH Branched-chain-amino-acid aminotransferase 2, chloroplastic; TrEMBL-Plants: tr|A0A072V3G0|A0A072V3G0_MEDTR Branched-chain-amino-acid aminotransferase; Found in the gene: LotjaGi1g1v0364300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84029778..84033127) extracted from Lotus japonicus Gifu genome v1.2.
TTAGTTTGTTGGGGCTTGTACGATTAAATAAAGGAAATTAAATATTCCGGATCATTTATAGTCAACAATATAACAAAGAT CATGTGATAGCAGATGGGGACTTACAACAGCTATGCATCTCAACCCTCCCCTCTTGAAATCCCAGACCAAAGTTACAGGT GAGTTAATTATTACTCCTTCCATTAAGTATTGACAGTAAGAAAATTTTAAGGGGTTAACGTGTATTAGAACAACAGTTAA CTTGTCTTTTAAGGGGTTAAGTTGTTATTGTTCTGCATTTTGACAAAAATCTAGTGATGATGAATATGCCAATGTTGATT GGGACAACCTTGGATTTGGACTGATGCCAACTGATTACATGTACGTTGATAAATGCTACGCTGGTAAGAATTTTGTACGA GGACAACTCACTCGTTATGGAAACATTGAACTTAGCCCATCAGCTGGGGTCCTAAATTATGGTCAGGTACGATGTGTCCA AAAATACTTAATACCCGTTTGGATGGAAATTAAAGAATAATTAATAAGTGATTGTCTTCATCCCTGAAATGTGAAATTTA GGGATTGTTTGAAGGCACGAAAGCATGCAGAAGCGAAAATGGGCGATTGCTGCTCTTCCGTCCAGAGGAAAATGCCATCC GCATGAAGATTGGCGCCGAGAGAATGTGCATGCAATCCCCTTCAATCGATCAATTCGTCGATGCTCTCAAGCAAACTGCA CTTGCAAACAAGCGTTGGGTAAGATCATCCTAAACTAAATCAATGCATTTCAATGATTTCGTGTTACATTTGAATTTCCT CACACAATTGATGTAAACCCTTATCAGATTCCTCCACCGGGTAAAGGATCATTGTATATGAGGCCTCTCCTCTTAGGAAG TGGTCCAGTTTTGGGTTTGGCTCCTGCACCTGAATACACTTTCCTTGTATATGCTTCCCCTGTTCGTAACTATTTCAAGG TTAGTGATACTTCGTTTGATTTTTCATTTTTCCTCACTTGAATTTACTTCAAAACTTCAATCTTGCTTCTTTAATTTGTA CCCACCACAGGAGGGTTCCGCGCCGCTTAGCTTGTTCGTGGAGGAGGATTTTGACCGTGCTTCTCGCCGCGGCACCGGGA GTGTTAAAACCATTTCTAATTATGCTCCGGTAAGCATTTTTATGTCTTTCAGTTTTTCACTGAAACCAAACAAAACAATA TTATTATCCTCTGTGTAAATTAAACATTAGTACAATATGCAATGGTTTAGTTTTTGTTCATTTTTATTTTTTTTAGCTGG GAAATCTTCGTTTATGCAAGCTTATCTTATTTGTTGGTGACAGTTTTCCCCAATTTCTTTGACTGTTATTTTTTTTTTCA TCACTATCATGTGATTTAGCGTGCGTGTATTTTGAATTCATATGATATCATATCAGTAAATGATATGTAAAGTATATGAA TTTGGACAAAAATGTAAAAGGGATATTGGAGTATTCAATTGTACCACTTGTCTTGACGTGTAGGTCTTAATGGCACAACT TAGAGCCAAGAACAGAGGATTTTCGGATGTGCTATACCTTGATTCAGAGACCAAGAAAAATCTGGAGGAGGTCTCTTCTT GTAACATTTTTATTGCCAAGGTACTATTCTTGTAGCATTTTTTCTTTTCAAGCATGTTGCAATGCCGCATATGATGAGTG GCGAGAAACAACAAAAGAAAAATGTACACCAAGTTAAAACTAGTGTTGTAAGCTAATGAAGGCATACATGAGTCTTTCAA AACTGCAATTCCAGAACTATAAGTTACGATTTAATGCTAGAAATTACAGAAAACTGATTAAAATATGTAAGTAGATGTCA TCAAAAGTTTTGGAGACTTTGCATGTAAGCAGGGATTGGAATGAATGGGAGGTATTCTCGATATTTGATAGATCATATGA TATGGGCAAACATACAACCTAAGATATTAAAAACATAAGGTTGTGTTAGAGAACAGAATTTTAGACAATTGCAGTTAAGT TGAATTGTTTACCTTCCCGTTTGCGCATGTTACCAAACAATTTAGTGAAATTGTCAACTACATTCACTTGCAACTGGCCA ATCTAATTTGTTTTCTAATCTCATAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACCATACTTGCCGGAATCACC AGAAAAAGTGTAATTGAAATTGCTGGTGATCTCGGCTATCAGGTAAGAATATATAATAAGTACTTTTGGCTCCTACATTC AATATTTTGTGCTTGTGTTTGGATACTAATTGAGGGCAATGTGAATAGACTTCTGAAGCTAATGGATTATGGATATCGCA GCATATTGTTTCTGGCTTTTTGAATTCATGATTAGTCTTTCTCACAGACAGTAAAAATTTGAGTAGTCATTCGTTAAGTT TGTTTAAACTACACCAGTTATTGTTAATTAGTTTATATTTTTCTGTTGTTGAAGTTTTCAGCAAATTAAACTCGTATAAT CCATTAGTATTGTCTTCTACAGCAACAACAAAAGACTTATCCTACTCAGTGTAGTATTGTCTTCTAAACCAGTAAAAATA GAAAAATAAATAGGAACACTATAATCTTAAAAAAAGAAAGTCAATACAATTTACATTAAAGTAGTCTTACAAGTTCAAGG AAAACAAATGTTTGAAGTTCAGATCATAGAGTTGATCATATTGGAGCTTTGTGTATTATTTTTCTCTTTCAAATATGCTT ACTGCATGACCAAATTTGTTCAGGTGGAAGAGCATGCTGTAAACGTGGATGAATTGATGGAGGCTGATGAAGTATTCTGC ACAGGAACTGCTGTTGGTGTTGCCCCTGTAGGGAGTATCACATACCAGGACAGAAGGTAATAGTAACTTACATATATAAG AATATTACTTATGTTTTTAGAAAAGAAAAGCTAATTTCTTCTTCGATCATGTATAAACCAGGGTTGTTAATGGCGGATAG CGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCAAGCGCTATTGCGGCGCTATAGCGGCAAATAACGCAAATAGCGGT GAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCTATAGGCTATTGCGCCGCTATAACGTGCTATTAACAAGCCTG ATAAAAACTATATAAAACTTCCTCTCTAGATTACAAATCTTAACTATTTTATTTAACAGGTATAAATGCATCATATCAGT CTAAAATTTGCTGAAATATTGTTATATATCTGCAGGGCGGAATATAAAACAGGTTCCGGAACCATTTGTCAAGAGTTGTA CAAAACTATATCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGGTGGATTGTTGAAATTGATTAA
CDS sequence (LotjaGi1g1v0364300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACTTACAACAGCTATGCATCTCAACCCTCCCCTCTTGAAATCCCAGACCAAAGTTACAGTGATGATGAATATGC CAATGTTGATTGGGACAACCTTGGATTTGGACTGATGCCAACTGATTACATGTACGTTGATAAATGCTACGCTGGTAAGA ATTTTGTACGAGGACAACTCACTCGTTATGGAAACATTGAACTTAGCCCATCAGCTGGGGTCCTAAATTATGGTCAGGGA TTGTTTGAAGGCACGAAAGCATGCAGAAGCGAAAATGGGCGATTGCTGCTCTTCCGTCCAGAGGAAAATGCCATCCGCAT GAAGATTGGCGCCGAGAGAATGTGCATGCAATCCCCTTCAATCGATCAATTCGTCGATGCTCTCAAGCAAACTGCACTTG CAAACAAGCGTTGGATTCCTCCACCGGGTAAAGGATCATTGTATATGAGGCCTCTCCTCTTAGGAAGTGGTCCAGTTTTG GGTTTGGCTCCTGCACCTGAATACACTTTCCTTGTATATGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGTTCCGCGCC GCTTAGCTTGTTCGTGGAGGAGGATTTTGACCGTGCTTCTCGCCGCGGCACCGGGAGTGTTAAAACCATTTCTAATTATG CTCCGGTCTTAATGGCACAACTTAGAGCCAAGAACAGAGGATTTTCGGATGTGCTATACCTTGATTCAGAGACCAAGAAA AATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACCAT ACTTGCCGGAATCACCAGAAAAAGTGTAATTGAAATTGCTGGTGATCTCGGCTATCAGGTGGAAGAGCATGCTGTAAACG TGGATGAATTGATGGAGGCTGATGAAGTATTCTGCACAGGAACTGCTGTTGGTGTTGCCCCTGTAGGGAGTATCACATAC CAGGACAGAAGGGCGGAATATAAAACAGGTTCCGGAACCATTTGTCAAGAGTTGTACAAAACTATATCAGGAATTCAAAC GGGTACTATTGAAGATAAGAAGGGGTGGATTGTTGAAATTGATTAA
Protein sequence (LotjaGi1g1v0364300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTYNSYASQPSPLEIPDQSYSDDEYANVDWDNLGFGLMPTDYMYVDKCYAGKNFVRGQLTRYGNIELSPSAGVLNYGQG LFEGTKACRSENGRLLLFRPEENAIRMKIGAERMCMQSPSIDQFVDALKQTALANKRWIPPPGKGSLYMRPLLLGSGPVL GLAPAPEYTFLVYASPVRNYFKEGSAPLSLFVEEDFDRASRRGTGSVKTISNYAPVLMAQLRAKNRGFSDVLYLDSETKK NLEEVSSCNIFIAKGKCISTPATNGTILAGITRKSVIEIAGDLGYQVEEHAVNVDELMEADEVFCTGTAVGVAPVGSITY QDRRAEYKTGSGTICQELYKTISGIQTGTIEDKKGWIVEID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 361 | 359 | 6.8E-208 | – | |
| PANTHER | 3 | 361 | 359 | 6.8E-208 | – | |
| PIRSF | 11 | 361 | 351 | 7.3E-111 | ||
| Gene3D | 12 | 188 | 177 | 6.0E-58 | ||
| SUPERFAMILY | 21 | 357 | 337 | 8.37E-100 | ||
| TIGRFAM | 57 | 360 | 304 | 1.2E-93 | ||
| CDD | 67 | 348 | 282 | 7.71327E-120 | ||
| Pfam | 80 | 318 | 239 | 1.9E-39 | ||
| Gene3D | 189 | 361 | 173 | 8.3E-60 | ||
| ProSitePatterns | 244 | 273 | 30 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Branched-chain-amino-acid transaminase activity | Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. | ||
| Biological process | Branched-chain amino acid metabolic process | The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. |
Expression pattern of LotjaGi1g1v0364300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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