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LotjaGi1g1v0458700.1

Overview

Field Value
Gene ID LotjaGi1g1v0458700
Transcript ID LotjaGi1g1v0458700.1
Related isoforms 11
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:96212820..96216930) extracted from Lotus japonicus Gifu genome v1.2.

AATGATTTTAAGTAGATGATATCTTGAATTAGAGGCCACTAAATAAGACAATATATAATCTAAAAAAAATCATAATATAA ATTCTAACCAATGATTGGATTTGTCACACTTATTGGGAGATGGAATCAAGAAGAGGGATAAGAGGAGAATAAAGAAAGAA GAAAAGGACAAGACAGTCATTTGGTGTCAATATATATATATATATATCGTATATATCATAGCGTAGACCCTCTCTGGTTT CTGGGTATCGTTGTTTCTTCGTGAGAGCAGCTTCTTCGTCTTCTTCGTTTCGGAAGAACAAGGGTTTGGGATTTGGGAAG GTGAGAGATTCACGTTCTGTTCTTGTTGATTGGATCTCTCATTCCTAATCTTCCCTCACCCTCACCGCTCTCAGGTAACC CCTCTCTCTCTCTCTCTGAATTTTTGATTCTAGGGTTTCTGTTCTGATCCCGATTTTTGTCCAGATCTGAAAGCGCTACC TCGAATTCATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGT ACCCTTTTCTTAATTTTACCTCAATCGAGCATGTGGATATGGTTTTTTTTTGTTAGATGATACGGTTGCTTGGTGTGATT TCGTTGTTGGTGGTGGTGATTTTGTGTGTTGTTTTGCTGATATTGGATGCTGCATATTTTTAGCGTCTGCTAAAGGCATG TCTTTGTGATGTTATTTCTATTATTGCAGGTATTTGTTGATGTGGGTGCTGGTGGGTGTGTGTGTTTGCGTGAGCATTGC TTTTTTTTTTTTGCTGTTGAGTTTGAATGGTGCATGTTTTTAGGGTCTGCCAATGCCCTGTCTTAGCGATGTTTTAATTA TAATTACAGGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGTGCGCACGCAATACTGCATTTTATAGTGTCTGCA GAAGCCTGTCTTTGTGATGTTTTTGTTTTATTGCCTTGTTCTTAGTCTGTGTTTTTTGTTATTGGGTGTTAATGCTGCGT GTTTATAGTGTCTATACATGCCTGTCTTTAAGACCTGATGTTTTTGTTTATCGCAGGTATTTAAGTATTGGGGGTGGTGT GTGTACCGCTGCTGTGCATGTTGTTATTGAGTGTGAATTGTGCCTGTTTACAGTGTCTTCAAATGCCTCTCTCATTGATG TTTTTTTGTTTAAGTGCGGTGTTTGATGTTGTTGGTGGTAGTGATGGAGTGTGTTACAATATTGTGTTTGAATGCTTATT AGTTTTAGAATCTGAAAATGAACATGTCAGTGTTTTTTATTTTTAAAATTGCAGTGTGTTGTTATATTGTGTTTGGATGC TGAATGTTTGTAGTATCTGCAAATGCACATGTCAGTGATGTTTTTGTTTATTTCAGTGTGTTTTTTGTTATTGAGTTTGA ATGGTGCATATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTTTTTTGTTTATTGCAGGTCCAGTTGCTGAGGACA TGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTATTCATTTC CCTCCTGATTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCATTATTATGGTGTGATAATAGCTGAGAATTTTGAG GCGTTCAGTTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTATCTCAACCAGGTTGCATTTAGGACTAAGGTCTTT CACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAA GGTTTGGCTTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTGTCTGGTTATTGTTTGTGCATTGAAATTGGTAAA TTTACTTTTAAATAGGTTTTATCATTTTCCTCTTTTATTTGTTTTTAGGGGTGTGATTATTGTATATTGAAATAGTTTAA CTTTGAAAAAATAATGATGGGTATGGTATAATCTAGGCTAATTTAAATCATCTAAGTTCTTCTTTGTTGCTATAATTGTT AGATATTTTCATGTTGTTTAGATTTGTTGTGATTGAATTTGGATTTTTTTCATGAAAATTTTGAATTATAAGCTTTTATG ACGCCCAAAAATCACTTTTAAGTTTTTACTCAGGGAATGTATTGTCTGTGAAGGCTGAACTTTATATCCTTAAATTCAAG ATATTATTGAATATAGTAGTCTCTAGCGAGTGGTGTCTCGTTGCAGCTGGTGTCTGCTCTTTCATTCTTGTCATGTTGTG TTTCTGTTGCGACTGCTGTAGCGTGCCGGAAATTGCAGCCTTTCCGAGAGTTTTGGCTGCTATTGTGAAATTGGGGAGAA CCTGTGTATAAACCTTCAAATTCTAACATTAAACAGGCTATTTGTTCGTTCCTCTCACTGTCTTAATATCTTCATTTGAC CGAAACCTGTCAGACCTCTGCTCACCAGCAAGATTCTGGCTACGTGTAGTTTTCAGCTATGCTGCACTTTCTGGCCACCA GCCCTACTTTTTCAGCCAAATATTTTTTTTCTTTGACTTTTCACTTTCCTCCAGGAATTACTTCTGTTTTGTGGGCATTT CTTTGTTCTCTCCTACTATCCTGAGTTTTTTTCCTGCTTTTAATGTCTTTTAAAATAGAGACTAAACTAATTAGGTGGTA AAATGAAAAAACCATTGAGACTACTAGTTCTAATTTTGTAGGATAACAAGACTGAGACTTTTAGCTGTGTCTGGTTGGTC TACCTACTGTCGAGTGTCATCTTGATTAGATGGTGGGGTAGAATATTTTTTAATGGTGCAGCCCGGTTGGTATGGCCTAC GTTGCATGAATTTTGTTTCTGCTATTGGTAATTGTCCTCCTTAATATGTTGTGTAAGAATTTGAAATCTTGTTTTCAAGA ATGAACATGTCTTTAGATTTTTTGTTCAATATATGATTAGTAGTTTTCTAAAATTGTTGTATGTGAGTGAAACTCATGTC TCATGCTGATATTAAGAGGAATCCAGATAGTGAACTTTCTTATCGTGTTTTGTTTGGCATACCAGGTACTGCTTTCGATC TGCTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAA GTACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGATGATATGTTTAGACCATGTAAATTGAATGGC ATTTATTATGACTGTTTTGGGTTTGCTTTTGTCTCTTCCTGTTATCTGGGGTAAAGATTCTGTTTCTGTTATGGGGGAAA GGGGAGAAGGTGGTGTTGGAATTTCATAAAAAAAAATGACTGTTCAACCACGTTGATGGGTTATCATGATGCAAAGCAGC GAACATAATGTTATTTGTATCATGGCTGTGGTGTACCTTTCTCTTTGAAGCAATGTAGAAATAGTGATGTCACAGGCCTT CCGTTGATGTCGTTAATTATGATTACATATCACCTGTCATATCATCTCTAATATCTAGGTCGGCATCAATTACACGTCTT GGAGTTCATTTGATTTACCATTAGTAAGTATAAAAAGAGAAAACAAAACATCTTGAAACATTTTTTTTTTGAACTAGCAA GTGTCTCAGGATGTGTTATTTCCTCATTTTCATACTTTGTAATGGTAGCCAAACCGACTATAGCTGTCGGCTGAGAAATA ATCCTTTTTAACACTTGTTACGCTTTATGAGAGATATAGAGATATACAAGAGATGTGATAGAATAAAAATTAGATAGGAA GAGAAAGTGACTGAAATTGAGATAGAAGAGAAAATGTGCGAATGGATTATACCTTTTAGTTCTCAACGAAAATTCTCTCA GGTGAAGCATGAGAGGATCCTTATCCTAATCAATGTTTACCCTTTTGTTTTCATTAGAATATCCAGTTTAGCATTCAAAG ATACTAAACGTGAAAGAATATTTTGTTGATTGGCTTCCAAAGGATCTGCTTAGCCACTTAGTTATACATTAAAACTTAGT TGTACTCCATGCGGGTCCAAGTTCAGCTCTG 

CDS sequence (LotjaGi1g1v0458700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTCCAGTTGC TGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTA TTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGC AACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTACTGCTTTCGATCTG CTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGT ACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA 

Protein sequence (LotjaGi1g1v0458700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 147 147 2.4E-99
PANTHER 1 147 147 2.4E-99
Gene3D 1 148 148 1.7E-75
SUPERFAMILY 2 147 146 1.09E-66
CDD 3 142 140 3.40877E-76
SMART 4 147 144 3.3E-81
ProSiteProfiles 4 136 133 48.77
Pfam 5 141 137 5.6E-54
ProSitePatterns 74 89 16 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0458700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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