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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0458700 |
| Transcript ID | LotjaGi1g1v0458700.5 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|A0A078G9X5|A0A078G9X5_BRANA BnaC01g39370D protein; Found in the gene: LotjaGi1g1v0458700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96213682..96216442) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTACCCTTTT CTTAATTTTACCTCAATCGAGCATGTGGATATGGTTTTTTTTTGTTAGATGATACGGTTGCTTGGTGTGATTTCGTTGTT GGTGGTGGTGATTTTGTGTGTTGTTTTGCTGATATTGGATGCTGCATATTTTTAGCGTCTGCTAAAGGCATGTCTTTGTG ATGTTATTTCTATTATTGCAGGTATTTGTTGATGTGGGTGCTGGTGGGTGTGTGTGTTTGCGTGAGCATTGCTTTTTTTT TTTTGCTGTTGAGTTTGAATGGTGCATGTTTTTAGGGTCTGCCAATGCCCTGTCTTAGCGATGTTTTAATTATAATTACA GGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGTGCGCACGCAATACTGCATTTTATAGTGTCTGCAGAAGCCTG TCTTTGTGATGTTTTTGTTTTATTGCCTTGTTCTTAGTCTGTGTTTTTTGTTATTGGGTGTTAATGCTGCGTGTTTATAG TGTCTATACATGCCTGTCTTTAAGACCTGATGTTTTTGTTTATCGCAGGTATTTAAGTATTGGGGGTGGTGTGTGTACCG CTGCTGTGCATGTTGTTATTGAGTGTGAATTGTGCCTGTTTACAGTGTCTTCAAATGCCTCTCTCATTGATGTTTTTTTG TTTAAGTGCGGTGTTTGATGTTGTTGGTGGTAGTGATGGAGTGTGTTACAATATTGTGTTTGAATGCTTATTAGTTTTAG AATCTGAAAATGAACATGTCAGTGTTTTTTATTTTTAAAATTGCAGTGTGTTGTTATATTGTGTTTGGATGCTGAATGTT TGTAGTATCTGCAAATGCACATGTCAGTGATGTTTTTGTTTATTTCAGTGTGTTTTTTGTTATTGAGTTTGAATGGTGCA TATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTTTTTTGTTTATTGCAGGTCCAGTTGCTGAGGACATGTTCCAC TGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGA TTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCATTATTATGGTGTGATAATAGCTGAGAATTTTGAGGCGTTCAG TTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTATCTCAACCAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAA CATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTTTGGC TTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTGTCTGGTTATTGTTTGTGCATTGAAATTGGTAAATTTACTTT TAAATAGGTTTTATCATTTTCCTCTTTTATTTGTTTTTAGGGGTGTGATTATTGTATATTGAAATAGTTTAACTTTGAAA AAATAATGATGGGTATGGTATAATCTAGGCTAATTTAAATCATCTAAGTTCTTCTTTGTTGCTATAATTGTTAGATATTT TCATGTTGTTTAGATTTGTTGTGATTGAATTTGGATTTTTTTCATGAAAATTTTGAATTATAAGCTTTTATGACGCCCAA AAATCACTTTTAAGTTTTTACTCAGGGAATGTATTGTCTGTGAAGGCTGAACTTTATATCCTTAAATTCAAGATATTATT GAATATAGTAGTCTCTAGCGAGTGGTGTCTCGTTGCAGCTGGTGTCTGCTCTTTCATTCTTGTCATGTTGTGTTTCTGTT GCGACTGCTGTAGCGTGCCGGAAATTGCAGCCTTTCCGAGAGTTTTGGCTGCTATTGTGAAATTGGGGAGAACCTGTGTA TAAACCTTCAAATTCTAACATTAAACAGGCTATTTGTTCGTTCCTCTCACTGTCTTAATATCTTCATTTGACCGAAACCT GTCAGACCTCTGCTCACCAGCAAGATTCTGGCTACGTGTAGTTTTCAGCTATGCTGCACTTTCTGGCCACCAGCCCTACT TTTTCAGCCAAATATTTTTTTTCTTTGACTTTTCACTTTCCTCCAGGAATTACTTCTGTTTTGTGGGCATTTCTTTGTTC TCTCCTACTATCCTGAGTTTTTTTCCTGCTTTTAATGTCTTTTAAAATAGAGACTAAACTAATTAGGTGGTAAAATGAAA AAACCATTGAGACTACTAGTTCTAATTTTGTAGGATAACAAGACTGAGACTTTTAGCTGTGTCTGGTTGGTCTACCTACT GTCGAGTGTCATCTTGATTAGATGGTGGGGTAGAATATTTTTTAATGGTGCAGCCCGGTTGGTATGGCCTACGTTGCATG AATTTTGTTTCTGCTATTGGTAATTGTCCTCCTTAATATGTTGTGTAAGAATTTGAAATCTTGTTTTCAAGAATGAACAT GTCTTTAGATTTTTTGTTCAATATATGATTAGTAGTTTTCTAAAATTGTTGTATGTGAGTGAAACTCATGTCTCATGCTG ATATTAAGAGGAATCCAGATAGTGAACTTTCTTATCGTGTTTTGTTTGGCATACCAGGTACTGCTTTCGATCTGCTCACT GCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGG CCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
CDS sequence (LotjaGi1g1v0458700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCTGTCTTAGCGATGTTTTAATTATAATTACAGGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGTGCGCA CGCAATACTGCATTTTATAGTGTCTGCAGAAGCCTGTCTTTGTCCAGTTGCTGAGGACATGTTCCACTGGCAAGCGACAA TTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGATTATCCTTTCAAG CCCCCTAAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAA GGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTACTGCTTTCGATCTGCTCACTGCTGACTGATCCAAACCCTGATG ACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGGCCACTGCTCGCAGCTGGACCCAG AAATATGCCATGGGCTGA
Protein sequence (LotjaGi1g1v0458700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCLSDVLIIITGICCCGWWWVYVCAHAILHFIVSAEACLCPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFK PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQ KYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 34 | 28 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| SMART | 20 | 164 | 145 | 7.0E-63 | – | |
| Gene3D | 33 | 165 | 133 | 3.7E-65 | ||
| Phobius | 35 | 165 | 131 | - | – | |
| PANTHER | 35 | 164 | 130 | 1.5E-86 | – | |
| PANTHER | 35 | 164 | 130 | 1.5E-86 | – | |
| SUPERFAMILY | 39 | 164 | 126 | 1.13E-57 | ||
| ProSiteProfiles | 42 | 153 | 112 | 42.655 | ||
| CDD | 42 | 159 | 118 | 5.00727E-65 | ||
| Pfam | 44 | 158 | 115 | 2.6E-48 | ||
| ProSitePatterns | 91 | 106 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0458700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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