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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0458700 |
Transcript ID | LotjaGi1g1v0458700.12 |
Related isoforms 11 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A0B2RC86|A0A0B2RC86_GLYSO SUMO-conjugating enzyme UBC9; Found in the gene: LotjaGi1g1v0458700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96215000..96216483) extracted from Lotus japonicus Gifu genome v1.2.
TCCCGATTTTTGTCCAGATCTGAAAGCGCTACCTCGAATTCATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTG CAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTACCCTTTTCTTAATTTTACCTCAATCGAGCATGTGGATATGGTTTTT TTTTGTTAGATGATACGGTTGCTTGGTGTGATTTCGTTGTTGGTGGTGGTGATTTTGTGTGTTGTTTTGCTGATATTGGA TGCTGCATATTTTTAGCGTCTGCTAAAGGCATGTCTTTGTGATGTTATTTCTATTATTGCAGGTATTTGTTGATGTGGGT GCTGGTGGGTGTGTGTGTTTGCGTGAGCATTGCTTTTTTTTTTTTGCTGTTGAGTTTGAATGGTGCATGTTTTTAGGGTC TGCCAATGCCCTGTCTTAGCGATGTTTTAATTATAATTACAGGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGT GCGCACGCAATACTGCATTTTATAGTGTCTGCAGAAGCCTGTCTTTGTGATGTTTTTGTTTTATTGCCTTGTTCTTAGTC TGTGTTTTTTGTTATTGGGTGTTAATGCTGCGTGTTTATAGTGTCTATACATGCCTGTCTTTAAGACCTGATGTTTTTGT TTATCGCAGGTATTTAAGTATTGGGGGTGGTGTGTGTACCGCTGCTGTGCATGTTGTTATTGAGTGTGAATTGTGCCTGT TTACAGTGTCTTCAAATGCCTCTCTCATTGATGTTTTTTTGTTTAAGTGCGGTGTTTGATGTTGTTGGTGGTAGTGATGG AGTGTGTTACAATATTGTGTTTGAATGCTTATTAGTTTTAGAATCTGAAAATGAACATGTCAGTGTTTTTTATTTTTAAA ATTGCAGTGTGTTGTTATATTGTGTTTGGATGCTGAATGTTTGTAGTATCTGCAAATGCACATGTCAGTGATGTTTTTGT TTATTTCAGTGTGTTTTTTGTTATTGAGTTTGAATGGTGCATATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTT TTTTGTTTATTGCAGGTCCAGTTGCTGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATAT GCTGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCAT TATTATGGTGTGATAATAGCTGAGAATTTTGAGGCGTTCAGTTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTAT CTCAACCAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAA GGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTTTGGCTTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTG TCTGGTTATTGTTTGTGCATTGAAATTGGTAAATTTACTTTTAA
CDS sequence (LotjaGi1g1v0458700.12) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTCCAGTTGC TGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTA TTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGC AACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGTTTTAA
Protein sequence (LotjaGi1g1v0458700.12) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 101 | 101 | 2.7E-68 | – | |
PANTHER | 1 | 101 | 101 | 2.7E-68 | – | |
Gene3D | 1 | 102 | 102 | 5.7E-51 | ||
SUPERFAMILY | 2 | 101 | 100 | 2.62E-47 | ||
CDD | 3 | 101 | 99 | 8.81223E-55 | ||
SMART | 4 | 101 | 98 | 4.3E-33 | – | |
ProSiteProfiles | 4 | 102 | 99 | 38.102 | ||
Pfam | 5 | 101 | 97 | 2.2E-39 | ||
ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0458700.12, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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