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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0458700 |
| Transcript ID | LotjaGi1g1v0458700.2 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2 8; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96213682..96215521) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCAGTGTGTTTTTTGTTATTGAGTTTGAATGGTGCATATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTTTT TTGTTTATTGCAGGTCCAGTTGCTGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGC TGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCATTA TTATGGTGTGATAATAGCTGAGAATTTTGAGGCGTTCAGTTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTATCT CAACCAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAAGG AACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTTTGGCTTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTGTC TGGTTATTGTTTGTGCATTGAAATTGGTAAATTTACTTTTAAATAGGTTTTATCATTTTCCTCTTTTATTTGTTTTTAGG GGTGTGATTATTGTATATTGAAATAGTTTAACTTTGAAAAAATAATGATGGGTATGGTATAATCTAGGCTAATTTAAATC ATCTAAGTTCTTCTTTGTTGCTATAATTGTTAGATATTTTCATGTTGTTTAGATTTGTTGTGATTGAATTTGGATTTTTT TCATGAAAATTTTGAATTATAAGCTTTTATGACGCCCAAAAATCACTTTTAAGTTTTTACTCAGGGAATGTATTGTCTGT GAAGGCTGAACTTTATATCCTTAAATTCAAGATATTATTGAATATAGTAGTCTCTAGCGAGTGGTGTCTCGTTGCAGCTG GTGTCTGCTCTTTCATTCTTGTCATGTTGTGTTTCTGTTGCGACTGCTGTAGCGTGCCGGAAATTGCAGCCTTTCCGAGA GTTTTGGCTGCTATTGTGAAATTGGGGAGAACCTGTGTATAAACCTTCAAATTCTAACATTAAACAGGCTATTTGTTCGT TCCTCTCACTGTCTTAATATCTTCATTTGACCGAAACCTGTCAGACCTCTGCTCACCAGCAAGATTCTGGCTACGTGTAG TTTTCAGCTATGCTGCACTTTCTGGCCACCAGCCCTACTTTTTCAGCCAAATATTTTTTTTCTTTGACTTTTCACTTTCC TCCAGGAATTACTTCTGTTTTGTGGGCATTTCTTTGTTCTCTCCTACTATCCTGAGTTTTTTTCCTGCTTTTAATGTCTT TTAAAATAGAGACTAAACTAATTAGGTGGTAAAATGAAAAAACCATTGAGACTACTAGTTCTAATTTTGTAGGATAACAA GACTGAGACTTTTAGCTGTGTCTGGTTGGTCTACCTACTGTCGAGTGTCATCTTGATTAGATGGTGGGGTAGAATATTTT TTAATGGTGCAGCCCGGTTGGTATGGCCTACGTTGCATGAATTTTGTTTCTGCTATTGGTAATTGTCCTCCTTAATATGT TGTGTAAGAATTTGAAATCTTGTTTTCAAGAATGAACATGTCTTTAGATTTTTTGTTCAATATATGATTAGTAGTTTTCT AAAATTGTTGTATGTGAGTGAAACTCATGTCTCATGCTGATATTAAGAGGAATCCAGATAGTGAACTTTCTTATCGTGTT TTGTTTGGCATACCAGGTACTGCTTTCGATCTGCTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGA TTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
CDS sequence (LotjaGi1g1v0458700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTATTCATTT CCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGCAACGGTA GCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTACTGCTTTCGATCTGCTCACTG CTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGGC CACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
Protein sequence (LotjaGi1g1v0458700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL LTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 1.1E-82 | – | |
| PANTHER | 1 | 118 | 118 | 1.1E-82 | – | |
| SMART | 1 | 118 | 118 | 5.4E-57 | – | |
| ProSiteProfiles | 1 | 107 | 107 | 42.629 | ||
| Pfam | 1 | 112 | 112 | 1.6E-47 | ||
| CDD | 1 | 113 | 113 | 3.49611E-62 | ||
| Gene3D | 1 | 119 | 119 | 4.2E-63 | ||
| SUPERFAMILY | 1 | 118 | 118 | 8.2E-56 | ||
| ProSitePatterns | 45 | 60 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0458700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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