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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0623400 |
| Transcript ID | LotjaGi1g1v0623400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloride channel protein; TAIR: AT3G27170.1 chloride channel B; Swiss-Prot: sp|P92941|CLCA_ARATH Chloride channel protein CLC-a; TrEMBL-Plants: tr|I1N7R2|I1N7R2_SOYBN Chloride channel protein; Found in the gene: LotjaGi1g1v0623400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117071407..117075755) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTTTATCCGATGGGAGAAGAAAGCTTAACAATCCATAACAAAATGGAAGAAGTTGTTGAAAGAGAAGAAGAAGAAGT AATAGACCCAGAAGGCAATCCACTAAATCAGCCTCTACTCATCAAGAGGAATCGGACACTGTCTTCCAATCCACTTGCTC TGGTCGGAGCAAAAGTTTCCTATATAGAAAGCTTGGACTATGAGTAAGTGCACGTTTCAAAATTCTTCTACAATTGATTT TAAAGTCATAATCAACTTTAGGATGAAAGTTCTATGAGCAGCTTCAGAGGGTGTCAGAATCAATTCTGAGATATGAGAAG TTGATCCAAACTTATTTGTAGGATAAATGAGAATGATCTGTTCAAGCATAATTGGAGAAGCAGATCAAGAGTTGAAGTAT TGCAGTACATATTCTTGAAATGGACCCTGGCACTTCTTGTTGGACTTCTCACTGGTATTATAGCCACCCTCATCAATCTT GCTGTTGAGAACATTGCAGGATACAAGCTTCTGGCTGTTCTTAGATACATCCACACAGAAAGGTCAGATCCAGAACAACC CTGGAACAATCTTTCTAATCTTCCTCATTTCTATCTATCTATTTGCTTTCTTTCTTTTTTGTTTCAATCAATTCAGCTTC CTCAACAATGCAACTACTGTGTGACAACATTAATATGCAGGTACTTGGCGGGTTTCCTATATTTCACGGGCGTTAATTTG TTCTTAACATTGATTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCGGGAATACCTGAAATCAAAGC TTATCTTAATGGCATTGATACTCCCAACATGTTTGGTGCTACAACGTTAATAGTCAAGGTAAGAATGTTATGTTATCTTC TACCCTGCTTCAACTCTTTCCTTCTGATTAACTCACACCAAAGGGTATAATTCATTCAACGCAATGGTTTAGTTTTCCTT TGGCATATTTGTTTCCTTGTTTTGTGTACTAAAGATGCAAAAAATTGATAGTTTCTCCGATCCTATATTTTTCCATTCAT TTCTTTTCTATTTTTATATCCATATAAGCTTGGTGACAATTTTACTGATTGTGGCACTGATTTCATGAAATAATACATAT GTAATTGATAAAATTATGGCACGACTACGAGTAGCACAGCTTGACAAGTGGACCCAAAAAATCAAAGGGAAAGCTCACAG GGATGGATAGTGTGTTGTTGGTTTCAATCATTTAATACTCAGCAACTTGTCCAATGAGTGGTAAACAAGAATAAAGTTAT GTTTACATATAAAACACAGACACCTAGAGATATAAGGAAAAAGAGAGAAATGAAAGATATGATTAGTAATGTGATAGGAA TAGAAGTGAGAAATAGTTAGAGAAATATAGTGGAAATGAGATCGTAGAGCAAATGAGGTGTGAATGAATCAAAATCAAGA AAATAATCATGGGGTGTCAATACTATCAGGCAGAAAATGTATAGAACACCACAAATTACAAAAGTGACTGATCAAGTTTC TTGTAACTGGTAAAAATTACTTCGGAAGTCTTTCTACAATTAATTCTAAAGGTAAAATCAATTATGAGAAGTTTACATGA GTGACTTCTGGGTGTCATAATTGATTCAGAGAGTTAATCCAAAGATGTTATAATAACTATTCACGTCACATCTCCATTTG GTCATTCATGTTTTTACCAGCAAATTGCCAATTCTTGTTCACACCACATCTCATGCATTTGTTATTGTAGATAATTGGAA GCATTGGAGCCGTCGCTGCAGGCTTAGATCTGGGGAAAGAAGGACCCTTGGTACACATAGGAAGCTGCATTGCTTCCTTA CTAGGCCAGGGAGGCCCTGACAATTACAAGATCAAATGGCGCTGGCTCCGATACTTCAACAACGATCGCGATCGCCGGGA TCTTATTACCTGCGGTGCATCTGCAGGAGTTTGTGCAGCGTTTCGCGCACCTGTGGGTGGAGTTCTCTTTGCCCTTGAAG AGGTGGCAACATGGTGGAGGAGTGCACTCCTATGGAGAACTTTCTTCTGCACAGCTGTTGTGGTGGTGGTGCTCAGGGCC TTCATTGAAATCTGCAACTCTGGGAAATGTGGCCTTTTTGGGTCAGGAGGGTTGATCATGTTTGATGTGAGCAATGTCAC TGTTAGGTACCATCCTATTGATATCATCCCAGTTGTAGTCATTGGAATCGTAGGTGGGATATTGGGAAGCCTTTACAATC ATCTTCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAGTAAGTAATGACCACCCTTAGTCTCAAAACACGTTGC ATATCATGAAAGTTTAAGGTCACATAGTTACTCATAAAAATATAGAAAATCACAAGACTTCATGTTCTACACTGACCACA CAACATTAACCCATTACCCAATGAAGACTAAAATTGTGCCAGTCACTGTCCTTGAGGGTACAAACATGAGTGCTCAACTG CTCAAGGCCAAACAACTATGGCATCTAATGAAACTAAGGCCGAGTTAGCTTATTTGAGTTTATCTATACGGCTATACCAT AAGAGCTTATGCATGTGTTTGTGTAAGCTTATGAAAATAGGTTGTGACCTACTTATTAGTTGTTTCGAGCTTATTTTCAT AAGCTGCTCATATTAGCATATAAATACGTGTTTATGCCTACCTGTTAGATATTTTGATTTTATTTCAATGAATTACACAA GCTATCTTATGAATAAGTACTTATGTGATAAGCGCTTATTGTCATAAGTGCTTAATTCAGTTATTTATCTAAACACCCTT TAAACACAAAGCATTTTACCCCAAAGTATATTGGGGGTTCGCACTCTAATAAAGCAGGCCAAGTGATACAATTAAAATTG ATGATATCTATGACATGATTCCTGAGATAGTATCTACCTACCTTTAATTTTTGCAGGAAAGGAAGAATGCACAAACTCCT CCTCAGTCTTGCAGTTGCACTCTTCACATCAGTGTGTCAATATGGTCTCCCATTCCTAGCAAAATGTACCCCTTGTGGCT CACTGCCTCCAGATTCAGAGTCTGTCTGCCCCACCAATGGAAGGTCTGGAAATTTCAAACAATTCAACTGCCCACCTGGC CACTACAACGATCTTGCCACCCTTCTGCTTACAACTAATGACGATGCTGTTCGAAACATATTCTCAACAAACACTTCTCA AGAATATCAACCCTTCTCCCTCCTAATTTTCTTTGCACTCTATTGCATATTGGGACTCTTTACTTTTGGAATTGCCGTGC CGTCCGGACTGTTCCTCCCAATCATCCTTATGGGCTCAGGTTATGGCCGCCTTATCGGCATCTTCATGGAACCTTACACA AAAAATGATCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCTTATG TGTGATCTTCCTTGAACTCACCAGCAATCTTCTCCTGCTACCAATAACAATGATGGTTCTCCTAATAGCCAAAACTGTCG GAGACTGTTTCAATCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAACCA TGGATGAGAAATCTCACTGTAGGTGATCTTGTTGATGTCAAGCCAGCAGTGATTTCCCTCCATGGAGTAGAAAAGGTAGC CAATATAGTAGATGCCTTGAAAAACACCACCCATAACGGTTTCCCTGTTATGGATGATGGGGTAGTACCACCGGTAGGAC AGGCCAATGAGGCAACAGAACTGCATGGACTAATTCTAAGAGCACACCTTATCCAAGCATTAAAAAAGAAGTGGTTCTTG AAAGAGAGAAGGAGAACAGAGGAATGGGAAGTAAGAGAGAAATTTACCTCGGTAGAGCTGGCTGAGAGAGGGAATATGGA AGAGGTGGCTATAACAAGGGAGGAAATGGAGATGTTTGTTGATCTACAGCCTCTCACTAATACAACTCCCTTTACAGTGC TAGAGAGCGTATCAGTAGCAAAGGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTGGTACCCAAGTAT CAGGCATCTGGGGTTAGTATTGAAACTATTCAAACATGAATTAGATATGTCAGTATTTTTCTAGTAGAATCTCAGGAGCA AAATAAAATTCATGGCTGATCTTAAATTATATAAATTTCCATATATAAGTAACCTAATGATGTGATCTGATCTCTTAATA GGTATCCCCTGTAATTGGGATCTTGACCAGACAGGATCTACTGCCCTACAACATTCTGACAGTCTTTCCTCACCTGGCAA AACATAAGAACAGAGAAAAGAGGAACTGA
CDS sequence (LotjaGi1g1v0623400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGAAAGCTTAACAATCCATAACAAAATGGAAGAAGTTGTTGAAAGAGAAGAAGAAGAAGTAATAGACCCAGA AGGCAATCCACTAAATCAGCCTCTACTCATCAAGAGGAATCGGACACTGTCTTCCAATCCACTTGCTCTGGTCGGAGCAA AAGTTTCCTATATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCATAATTGGAGAAGCAGATCAAGA GTTGAAGTATTGCAGTACATATTCTTGAAATGGACCCTGGCACTTCTTGTTGGACTTCTCACTGGTATTATAGCCACCCT CATCAATCTTGCTGTTGAGAACATTGCAGGATACAAGCTTCTGGCTGTTCTTAGATACATCCACACAGAAAGGTACTTGG CGGGTTTCCTATATTTCACGGGCGTTAATTTGTTCTTAACATTGATTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACA GCAGCTGGACCGGGAATACCTGAAATCAAAGCTTATCTTAATGGCATTGATACTCCCAACATGTTTGGTGCTACAACGTT AATAGTCAAGATAATTGGAAGCATTGGAGCCGTCGCTGCAGGCTTAGATCTGGGGAAAGAAGGACCCTTGGTACACATAG GAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAAGATCAAATGGCGCTGGCTCCGATACTTCAAC AACGATCGCGATCGCCGGGATCTTATTACCTGCGGTGCATCTGCAGGAGTTTGTGCAGCGTTTCGCGCACCTGTGGGTGG AGTTCTCTTTGCCCTTGAAGAGGTGGCAACATGGTGGAGGAGTGCACTCCTATGGAGAACTTTCTTCTGCACAGCTGTTG TGGTGGTGGTGCTCAGGGCCTTCATTGAAATCTGCAACTCTGGGAAATGTGGCCTTTTTGGGTCAGGAGGGTTGATCATG TTTGATGTGAGCAATGTCACTGTTAGGTACCATCCTATTGATATCATCCCAGTTGTAGTCATTGGAATCGTAGGTGGGAT ATTGGGAAGCCTTTACAATCATCTTCTACACAAGATCCTCAGACTCTACAATCTCATCAATCATCTTGCAGTTGCACTCT TCACATCAGTGTGTCAATATGGTCTCCCATTCCTAGCAAAATGTACCCCTTGTGGCTCACTGCCTCCAGATTCAGAGTCT GTCTGCCCCACCAATGGAAGGTCTGGAAATTTCAAACAATTCAACTGCCCACCTGGCCACTACAACGATCTTGCCACCCT TCTGCTTACAACTAATGACGATGCTGTTCGAAACATATTCTCAACAAACACTTCTCAAGAATATCAACCCTTCTCCCTCC TAATTTTCTTTGCACTCTATTGCATATTGGGACTCTTTACTTTTGGAATTGCCGTGCCGTCCGGACTGTTCCTCCCAATC ATCCTTATGGGCTCAGGTTATGGCCGCCTTATCGGCATCTTCATGGAACCTTACACAAAAAATGATCAAGGGTTGTTTGC AGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCTTATGTGTGATCTTCCTTGAACTCACCA GCAATCTTCTCCTGCTACCAATAACAATGATGGTTCTCCTAATAGCCAAAACTGTCGGAGACTGTTTCAATCCAAGCATC TATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAACCATGGATGAGAAATCTCACTGTAGG TGATCTTGTTGATGTCAAGCCAGCAGTGATTTCCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTAGATGCCTTGAAAA ACACCACCCATAACGGTTTCCCTGTTATGGATGATGGGGTAGTACCACCGGTAGGACAGGCCAATGAGGCAACAGAACTG CATGGACTAATTCTAAGAGCACACCTTATCCAAGCATTAAAAAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACAGAGGA ATGGGAAGTAAGAGAGAAATTTACCTCGGTAGAGCTGGCTGAGAGAGGGAATATGGAAGAGGTGGCTATAACAAGGGAGG AAATGGAGATGTTTGTTGATCTACAGCCTCTCACTAATACAACTCCCTTTACAGTGCTAGAGAGCGTATCAGTAGCAAAG GCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTGGTACCCAAGTATCAGGCATCTGGGGTATCCCCTGT AATTGGGATCTTGACCAGACAGGATCTACTGCCCTACAACATTCTGACAGTCTTTCCTCACCTGGCAAAACATAAGAACA GAGAAAAGAGGAACTGA
Protein sequence (LotjaGi1g1v0623400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEESLTIHNKMEEVVEREEEEVIDPEGNPLNQPLLIKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKHNWRSRSR VEVLQYIFLKWTLALLVGLLTGIIATLINLAVENIAGYKLLAVLRYIHTERYLAGFLYFTGVNLFLTLIAAVLCVCFAPT AAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYKIKWRWLRYFN NDRDRRDLITCGASAGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRAFIEICNSGKCGLFGSGGLIM FDVSNVTVRYHPIDIIPVVVIGIVGGILGSLYNHLLHKILRLYNLINHLAVALFTSVCQYGLPFLAKCTPCGSLPPDSES VCPTNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTSQEYQPFSLLIFFALYCILGLFTFGIAVPSGLFLPI ILMGSGYGRLIGIFMEPYTKNDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMMVLLIAKTVGDCFNPSI YEIILHLKGLPFMDANPEPWMRNLTVGDLVDVKPAVISLHGVEKVANIVDALKNTTHNGFPVMDDGVVPPVGQANEATEL HGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAERGNMEEVAITREEMEMFVDLQPLTNTTPFTVLESVSVAK AMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLPYNILTVFPHLAKHKNREKRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 87 | 87 | - | – | |
| PANTHER | 13 | 774 | 762 | 0.0 | – | |
| PANTHER | 13 | 774 | 762 | 0.0 | – | |
| CDD | 59 | 573 | 515 | 0.0 | – | |
| PRINTS | 64 | 72 | 9 | 3.3E-23 | ||
| SUPERFAMILY | 68 | 575 | 508 | 4.19E-99 | ||
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 88 | 112 | 25 | - | – | |
| Phobius | 113 | 132 | 20 | - | – | |
| Phobius | 133 | 161 | 29 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Pfam | 146 | 554 | 409 | 9.6E-88 | ||
| PRINTS | 159 | 176 | 18 | 4.1E-60 | ||
| Phobius | 162 | 180 | 19 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 181 | 202 | 22 | - | – | |
| PRINTS | 190 | 209 | 20 | 4.1E-60 | ||
| Phobius | 203 | 247 | 45 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 248 | 272 | 25 | - | – | |
| PRINTS | 254 | 273 | 20 | 4.1E-60 | ||
| Phobius | 273 | 277 | 5 | - | – | |
| PRINTS | 275 | 283 | 9 | 3.3E-23 | ||
| Phobius | 278 | 298 | 21 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| PRINTS | 289 | 299 | 11 | 3.3E-23 | ||
| Phobius | 299 | 309 | 11 | - | – | |
| PRINTS | 307 | 314 | 8 | 3.3E-23 | ||
| Phobius | 310 | 329 | 20 | - | – | |
| Phobius | 330 | 334 | 5 | - | – | |
| TMHMM | 335 | 357 | 23 | - | – | |
| Phobius | 335 | 353 | 19 | - | – | |
| Phobius | 354 | 364 | 11 | - | – | |
| Phobius | 365 | 386 | 22 | - | – | |
| Phobius | 387 | 450 | 64 | - | – | |
| PRINTS | 424 | 440 | 17 | 3.3E-23 | ||
| TMHMM | 450 | 472 | 23 | - | – | |
| Phobius | 451 | 484 | 34 | - | – | |
| PRINTS | 472 | 492 | 21 | 4.1E-60 | ||
| TMHMM | 476 | 493 | 18 | - | – | |
| Phobius | 485 | 504 | 20 | - | – | |
| PRINTS | 504 | 520 | 17 | 4.1E-60 | ||
| Phobius | 505 | 530 | 26 | - | – | |
| PRINTS | 522 | 541 | 20 | 4.1E-60 | ||
| TMHMM | 525 | 547 | 23 | - | – | |
| Phobius | 531 | 535 | 5 | - | – | |
| Phobius | 536 | 553 | 18 | - | – | |
| Phobius | 554 | 778 | 225 | - | – | |
| PRINTS | 560 | 574 | 15 | 4.1E-60 | ||
| SUPERFAMILY | 577 | 758 | 182 | 1.07E-19 | – | |
| Gene3D | 582 | 761 | 180 | 1.6E-15 | – | |
| ProSiteProfiles | 592 | 661 | 70 | 7.236 | ||
| CDD | 593 | 759 | 167 | 3.00877E-27 | – | |
| SMART | 595 | 654 | 60 | 2.7 | ||
| ProSiteProfiles | 705 | 770 | 66 | 9.521 | ||
| Pfam | 707 | 757 | 51 | 0.0024 | ||
| SMART | 708 | 761 | 54 | 1.2 | ||
| Coils | 772 | 778 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0623400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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