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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0723300 |
Transcript ID | LotjaGi1g1v0723300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129463014..129468056) extracted from Lotus japonicus Gifu genome v1.2.
TAGTAATTATTTTTTATTAGTGACGAATTTGTTTTCGTCACTAAATTTTTCCTTTATAAAAAATGGGGTGGAGTGTAGAT TTTAAAAAACAATGGGGTGGAGTGTCATTCTTGCAAACCTTGAGGGGGTGAGTGTATTTTACTAAAAAAAAACATTTTTA CATGAAATTAATTTAATGTGAAAACAAATAGAAATATAAATTTTAGATTATGCCATCGTGCGAGCTTCCCAACCCCTCAC CACTGGTTTCATCGACGCCGTCTCTGTTCCGCCGAACGCCGCCATATCGAGCATCCCCTCCGCTCCTCCATCACCACTGG TTTCATCTTCCACGGCGAGGCCTGCCGGAAAACTGAAGGTCGCCGTCATTCCCATCAATTTCTCCCTCCTCTGCGCCGTC ACATTTAAATCCTAATTTGAGAAACCCTAACACCAGTTCCACACTCCAACCATGTCTTCATCGAGAGAAGGAGACCCGAA CCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGACCCGCGTCAAGAACAAAACCCCCGCTCCGA TTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGGCGGAGATACGCCCACCGAAGCTGAAAATC ACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTCGAGGACCTGATTCGCCGTGTCCGATGGAA CACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTTCAAACGTGCGCGTTCTGTTTGGGAGCGCG CGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGGTGGAGATGAAGAACAAGTTCATCAACCAT GCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAGCTCTGGTATAAGTATATTCACATGGAGGA GATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAAGTGGATGCCGGACCAGCAGGGCTGGCTCT CGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGATTTTCGAGCGGTTCGTGCTGTGCCACCCG AGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAAGTTGCCAAGGCAAGGAATGTGTACGAGCG GGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGCATTTGCGGAGTTTGAGGAGCGGTGTAAGG AGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCAAGGGAAGGGCGGAGGATTTGTATAGGAAG TTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCTATTGTGGGGAAGAGAAGGTTTCAGTATGA GGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATATAAGGTTGGAAGAGAGTGTGGGGAGTAAGG AAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGGAGGAGAAGCGGTACTGGCAGCGATATATC TATTTGTGGTATGTTTGATTTGAATTTCATTTGATCATTTCCCCATGTTGTCGTTTTTCTTTCCAGTCTTTTACATTTTG TATTGATATTAATCATTTGTTTTTCGCATGTTACATAGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGT GGAGCGAACAAGAGATGTATACAAGTATGTTGTTTTTTATAAGCTTGAAGTTTGTTAATTGATAATAATTGTTTTTAGGT TCGCTCTAGATGTCACATGTCACTATCATGAATAAACCTCTGTTCTATCCATCAATCTTATTGGTAAACTGCTTAAAACT TGGCAACTTGGAATCTTGGTAAGTGTTAAGAGAATGTGATACCTCAATGAGGATATGTATTTGTGAAAGCAGCAAATTAC CTTTAGCTTATCTGCAACAAATTTATCTGCGGGACATTGATGACATTAAAATGCAAATTGGTTAGTAAATGTGCAGTGGA GTTCGAAGCTTTCATACTAATAATTTAATAGGCAAAAAGGAGAGGTAAAAAAATTAGAGGGGGTGTGGGGGGGGGGGGGG GGGGTTTATTGAGGAGAATAGTCCTTTGTTAATCTGTAATTCCTTTCTTCTGAATTCTGCAACCACATTCAATTTATCTT TTACCATCTGTTTTTTACATTTTTCTGGTCAATTTCTGTCATCAGTTACTATATCAGTATTAACACTAGTAAATTTATCC TATTGAATTGAGTATTGAGACTAATTCTGTTCTTTGTGGCTTCCATTTCTTCAGGGAGTGTCTTAACTTAATACCTCACA AAAAGTTCTCGTTCGCGAAGATGTGGCTTCTAGCAGCCCAATTTGAAATACGTCAGCTGAATCTCACAGCTGCTCGTCAA ATATTAGGAAATGCTATTGGAAAGGCTCCTAAAGATAAGGTAATATATATGTGGATGAAAATATTATAGCTTCTTTTAAT TCCAGCGTGATCAACTTTCTCACTCAGTTTCATCTTTGATGACAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCT TGGTAACATTGATCGATGCAGAAAATTGTATGAAAAATATTTGGAGTGGGCGCCTGAAAATTGCTATGCTTGGAGCAAGT ATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGAGCTAGATCCATATTTGAGCTTGCAATTGCCCAGCCAGCTTTG GACATGCCTGAGCTGTTGTGGAAGGTACACACAACTTATTTCTTGTGCAAATGAATGCATGGACTTAGTTGCATTTAACT ATGCGACTCATTCTTCACGCAGCTCATGAACTTAAATTACATTTCAGGGTTGGATGGATTAGGAAATTTTAGGAATGGGC TGGGTAGCCATTTGATTCTGTAGCTTTTTTATCCTATAGCTTTCTGATTGTAATTGTTCAGTCATAAAATATCATGTATT TTACGTTCTGACCTAACCGTATACCTCCATTGTCAGTTAGTATTTGATCTCACAAAAATTTGCACAGCATCTTTAACTTT ATATATAAAATGTTTAACAAATTTTAAGGACTGGGCCATTATTATGCTTCTTAATTTATTTAACCCTAGGAATAACAATT ACTCTGTAGAATGGTTTTAGCATTGCTCTGTGAATATGAGATTTGTTATTGCCTCTGTTTAAAGGTCCAGTGTGCCTGAT GAAGACATGTAATATAGTTAACTATTCCCCCGCTGTCTTTCAGCAATAATCACGTTGTTTTCTTTTATGTTTCCTTCTTT CTCCTTTTTTGTCATATTGTAATGCATACCTTGTCGAAGATATATGGTGTTCATAATCTAAGTGCAAAATTTGAAATACA ATATAGGCATACATTGACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCG AACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAATTTGAGGCAACAGCTGTGGATGAGGGTTTAGACTTACCAGAAG AAGAACAAAAGAAGCAATGCATTCAGCGTGCTAGAAGTATGTAATCCATATGCTGTTAATTTATGATTGAATGTCTTCAA TTTGAACTGAAGTGTAATAATTTTTTGATTTTCTTTATATTTCTTTCTGTGCCTGCACCAGGGGTGTTTGAAGAAGCTCT AAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGGCAATGCTATTGGAAAAATGGCTCAACCTGGAGGCTT CATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACATGTTCCCACT GAAGATGGTTCTTCTAGGTATGTAGCTAATTCATTGTTTATTCTCAAGAGTAAGTTTAAATGGCTACTTATGCAACATGG TCAGTGCTATTATGTTGGAGTTAGTCCACTTTTAGCATGACTGGATCAGTTTTTTTCATTAGAATCAATTCTGACACCAA ACAGCCACTGACAGCAGCTTCTCTCCATAATTGATTCTGATCAATTGTAGAAAGATTTCCAAACATGCACTTAAACTTTT GGCTTTGTGCATGTTCAGAAGCCATCAATTGTCTGCTTTTTTCACTTTTAATTTTACAACTCAGGTATTTTTTTAGTTAT CTATTTTGTTAGCCTATTTCCTACTTCATTTTGGTTAATTTAATTTGGCAGAATCGAAGAATTCATCGACTATTTATTTC CTGAGGAAACTCAGACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCGGATGAT GATGATTAGCACTAGCAGTATCTTATCTTGGATCTGTACCTGAGTGTATTCTTTGGCAAGTCGATTTTGTGACTGAAGTT TGTGTTACAGAACTGCATCTGAGAACTTCTAAAACTGTGACCCACGATTGATTAAGGCAATAGATGGTCTGATCAGTACC AGAATTATTTATTGAGTGTACATATGTTCATAACATTTTCTATTTGGTACATGCTCAAACACTTGTTGATTCTTTTTCAT GTAATTCGCAAGTTTGCATGCTTCTCTTGTCATGGTCTGTTAAAAATTAAAATGATGACCTGGTCGGTTTTTATTGTCGA TAGGCTCTAATCAGAAATTTTAATTCCATTTAGAAATTTTAGATTTCTTGTGATGGTCAATGTAGTTATGGTACAACTAC TTTGTGATGATATTTTAAGTTAGGATTGCTAAGTACTAACTACACATATCCTTGAGCTCGTGGGGTCTATTATAAATTTA TAATCGTGTTTTACTAAAGTTTGGTGATTTATTTGTTTAATTTAATTATCTTACTAAAACCATAGGCAATGGCGGATCTT GGAGAAAAAGTCTGGGGGGGCTAAAATAAGATTTCAATACATAAAGTAATTTTTTTTACTTAGCAATACTCATACCAAAA AAT
CDS sequence (LotjaGi1g1v0723300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCGAGAGAAGGAGACCCGAACCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGAC CCGCGTCAAGAACAAAACCCCCGCTCCGATTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGG CGGAGATACGCCCACCGAAGCTGAAAATCACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTC GAGGACCTGATTCGCCGTGTCCGATGGAACACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTT CAAACGTGCGCGTTCTGTTTGGGAGCGCGCGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGG TGGAGATGAAGAACAAGTTCATCAACCATGCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAG CTCTGGTATAAGTATATTCACATGGAGGAGATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAA GTGGATGCCGGACCAGCAGGGCTGGCTCTCGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGA TTTTCGAGCGGTTCGTGCTGTGCCACCCGAGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAA GTTGCCAAGGCAAGGAATGTGTACGAGCGGGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGC ATTTGCGGAGTTTGAGGAGCGGTGTAAGGAGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCA AGGGAAGGGCGGAGGATTTGTATAGGAAGTTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCT ATTGTGGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATAT AAGGTTGGAAGAGAGTGTGGGGAGTAAGGAAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGG AGGAGAAGCGGTACTGGCAGCGATATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGTG GAGCGAACAAGAGATGTATACAAGGAGTGTCTTAACTTAATACCTCACAAAAAGTTCTCGTTCGCGAAGATGTGGCTTCT AGCAGCCCAATTTGAAATACGTCAGCTGAATCTCACAGCTGCTCGTCAAATATTAGGAAATGCTATTGGAAAGGCTCCTA AAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAACATTGATCGATGCAGAAAATTGTATGAAAAA TATTTGGAGTGGGCGCCTGAAAATTGCTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCG AGCTAGATCCATATTTGAGCTTGCAATTGCCCAGCCAGCTTTGGACATGCCTGAGCTGTTGTGGAAGGCATACATTGACT TTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTA TGGATAAGCTATGCAGAATTTGAGGCAACAGCTGTGGATGAGGGTTTAGACTTACCAGAAGAAGAACAAAAGAAGCAATG CATTCAGCGTGCTAGAAGGGTGTTTGAAGAAGCTCTAAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGG CAATGCTATTGGAAAAATGGCTCAACCTGGAGGCTTCATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTG CCCAAGAAGCTCAAGAAGAGAAGACATGTTCCCACTGAAGATGGTTCTTCTAGAATCGAAGAATTCATCGACTATTTATT TCCTGAGGAAACTCAGACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCGGATG ATGATGATTAG
Protein sequence (LotjaGi1g1v0723300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSREGDPNLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKLKITDPHELGEYRLRKRKEF EDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRIDQ LWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYGEIDRARGIFERFVLCHPRVGAWIRYAKFEMKGGE VAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA IVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGSKERVRDVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDV ERTRDVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLTAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEK YLEWAPENCYAWSKYAELERSLSETDRARSIFELAIAQPALDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKV WISYAEFEATAVDEGLDLPEEEQKKQCIQRARRVFEEALNYFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKL PKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSDDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 35 | 35 | - | – | |
PANTHER | 7 | 694 | 688 | 0.0 | – | |
PANTHER | 7 | 694 | 688 | 0.0 | – | |
MobiDBLite | 11 | 27 | 17 | - | – | |
SMART | 71 | 103 | 33 | 1.3 | ||
SUPERFAMILY | 81 | 195 | 115 | 7.09E-24 | ||
ProSiteProfiles | 91 | 192 | 102 | 12.528 | ||
SMART | 105 | 137 | 33 | 1.9E-5 | ||
Gene3D | 113 | 320 | 208 | 8.2E-51 | ||
SMART | 139 | 171 | 33 | 7.9E-5 | ||
SMART | 173 | 204 | 32 | 2.5E-4 | ||
SUPERFAMILY | 194 | 263 | 70 | 3.79E-14 | ||
SMART | 206 | 237 | 32 | 4.4E-6 | ||
Pfam | 207 | 235 | 29 | 1.6E-13 | ||
ProSiteProfiles | 225 | 258 | 34 | 6.903 | ||
SMART | 239 | 274 | 36 | 1.3E-4 | ||
Coils | 241 | 261 | 21 | - | – | |
SUPERFAMILY | 267 | 523 | 257 | 3.72E-43 | ||
SMART | 276 | 310 | 35 | 3.0 | ||
SMART | 320 | 352 | 33 | 250.0 | ||
Gene3D | 321 | 521 | 201 | 5.5E-46 | ||
SMART | 354 | 388 | 35 | 1.8E-6 | ||
SMART | 398 | 434 | 37 | 8.8E-5 | ||
SMART | 436 | 467 | 32 | 93.0 | ||
ProSiteProfiles | 455 | 558 | 104 | 7.981 | ||
SMART | 469 | 501 | 33 | 1.4E-4 | ||
SMART | 503 | 537 | 35 | 1.5E-4 | ||
Gene3D | 522 | 607 | 86 | 2.5E-13 | ||
Coils | 534 | 554 | 21 | - | – | |
SMART | 539 | 570 | 32 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0723300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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