Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0723300 |
| Transcript ID | LotjaGi1g1v0723300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129463014..129468056) extracted from Lotus japonicus Gifu genome v1.2.
TAGTAATTATTTTTTATTAGTGACGAATTTGTTTTCGTCACTAAATTTTTCCTTTATAAAAAATGGGGTGGAGTGTAGAT TTTAAAAAACAATGGGGTGGAGTGTCATTCTTGCAAACCTTGAGGGGGTGAGTGTATTTTACTAAAAAAAAACATTTTTA CATGAAATTAATTTAATGTGAAAACAAATAGAAATATAAATTTTAGATTATGCCATCGTGCGAGCTTCCCAACCCCTCAC CACTGGTTTCATCGACGCCGTCTCTGTTCCGCCGAACGCCGCCATATCGAGCATCCCCTCCGCTCCTCCATCACCACTGG TTTCATCTTCCACGGCGAGGCCTGCCGGAAAACTGAAGGTCGCCGTCATTCCCATCAATTTCTCCCTCCTCTGCGCCGTC ACATTTAAATCCTAATTTGAGAAACCCTAACACCAGTTCCACACTCCAACCATGTCTTCATCGAGAGAAGGAGACCCGAA CCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGACCCGCGTCAAGAACAAAACCCCCGCTCCGA TTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGGCGGAGATACGCCCACCGAAGCTGAAAATC ACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTCGAGGACCTGATTCGCCGTGTCCGATGGAA CACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTTCAAACGTGCGCGTTCTGTTTGGGAGCGCG CGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGGTGGAGATGAAGAACAAGTTCATCAACCAT GCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAGCTCTGGTATAAGTATATTCACATGGAGGA GATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAAGTGGATGCCGGACCAGCAGGGCTGGCTCT CGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGATTTTCGAGCGGTTCGTGCTGTGCCACCCG AGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAAGTTGCCAAGGCAAGGAATGTGTACGAGCG GGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGCATTTGCGGAGTTTGAGGAGCGGTGTAAGG AGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCAAGGGAAGGGCGGAGGATTTGTATAGGAAG TTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCTATTGTGGGGAAGAGAAGGTTTCAGTATGA GGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATATAAGGTTGGAAGAGAGTGTGGGGAGTAAGG AAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGGAGGAGAAGCGGTACTGGCAGCGATATATC TATTTGTGGTATGTTTGATTTGAATTTCATTTGATCATTTCCCCATGTTGTCGTTTTTCTTTCCAGTCTTTTACATTTTG TATTGATATTAATCATTTGTTTTTCGCATGTTACATAGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGT GGAGCGAACAAGAGATGTATACAAGTATGTTGTTTTTTATAAGCTTGAAGTTTGTTAATTGATAATAATTGTTTTTAGGT TCGCTCTAGATGTCACATGTCACTATCATGAATAAACCTCTGTTCTATCCATCAATCTTATTGGTAAACTGCTTAAAACT TGGCAACTTGGAATCTTGGTAAGTGTTAAGAGAATGTGATACCTCAATGAGGATATGTATTTGTGAAAGCAGCAAATTAC CTTTAGCTTATCTGCAACAAATTTATCTGCGGGACATTGATGACATTAAAATGCAAATTGGTTAGTAAATGTGCAGTGGA GTTCGAAGCTTTCATACTAATAATTTAATAGGCAAAAAGGAGAGGTAAAAAAATTAGAGGGGGTGTGGGGGGGGGGGGGG GGGGTTTATTGAGGAGAATAGTCCTTTGTTAATCTGTAATTCCTTTCTTCTGAATTCTGCAACCACATTCAATTTATCTT TTACCATCTGTTTTTTACATTTTTCTGGTCAATTTCTGTCATCAGTTACTATATCAGTATTAACACTAGTAAATTTATCC TATTGAATTGAGTATTGAGACTAATTCTGTTCTTTGTGGCTTCCATTTCTTCAGGGAGTGTCTTAACTTAATACCTCACA AAAAGTTCTCGTTCGCGAAGATGTGGCTTCTAGCAGCCCAATTTGAAATACGTCAGCTGAATCTCACAGCTGCTCGTCAA ATATTAGGAAATGCTATTGGAAAGGCTCCTAAAGATAAGGTAATATATATGTGGATGAAAATATTATAGCTTCTTTTAAT TCCAGCGTGATCAACTTTCTCACTCAGTTTCATCTTTGATGACAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCT TGGTAACATTGATCGATGCAGAAAATTGTATGAAAAATATTTGGAGTGGGCGCCTGAAAATTGCTATGCTTGGAGCAAGT ATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGAGCTAGATCCATATTTGAGCTTGCAATTGCCCAGCCAGCTTTG GACATGCCTGAGCTGTTGTGGAAGGTACACACAACTTATTTCTTGTGCAAATGAATGCATGGACTTAGTTGCATTTAACT ATGCGACTCATTCTTCACGCAGCTCATGAACTTAAATTACATTTCAGGGTTGGATGGATTAGGAAATTTTAGGAATGGGC TGGGTAGCCATTTGATTCTGTAGCTTTTTTATCCTATAGCTTTCTGATTGTAATTGTTCAGTCATAAAATATCATGTATT TTACGTTCTGACCTAACCGTATACCTCCATTGTCAGTTAGTATTTGATCTCACAAAAATTTGCACAGCATCTTTAACTTT ATATATAAAATGTTTAACAAATTTTAAGGACTGGGCCATTATTATGCTTCTTAATTTATTTAACCCTAGGAATAACAATT ACTCTGTAGAATGGTTTTAGCATTGCTCTGTGAATATGAGATTTGTTATTGCCTCTGTTTAAAGGTCCAGTGTGCCTGAT GAAGACATGTAATATAGTTAACTATTCCCCCGCTGTCTTTCAGCAATAATCACGTTGTTTTCTTTTATGTTTCCTTCTTT CTCCTTTTTTGTCATATTGTAATGCATACCTTGTCGAAGATATATGGTGTTCATAATCTAAGTGCAAAATTTGAAATACA ATATAGGCATACATTGACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCG AACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAATTTGAGGCAACAGCTGTGGATGAGGGTTTAGACTTACCAGAAG AAGAACAAAAGAAGCAATGCATTCAGCGTGCTAGAAGTATGTAATCCATATGCTGTTAATTTATGATTGAATGTCTTCAA TTTGAACTGAAGTGTAATAATTTTTTGATTTTCTTTATATTTCTTTCTGTGCCTGCACCAGGGGTGTTTGAAGAAGCTCT AAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGGCAATGCTATTGGAAAAATGGCTCAACCTGGAGGCTT CATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACATGTTCCCACT GAAGATGGTTCTTCTAGGTATGTAGCTAATTCATTGTTTATTCTCAAGAGTAAGTTTAAATGGCTACTTATGCAACATGG TCAGTGCTATTATGTTGGAGTTAGTCCACTTTTAGCATGACTGGATCAGTTTTTTTCATTAGAATCAATTCTGACACCAA ACAGCCACTGACAGCAGCTTCTCTCCATAATTGATTCTGATCAATTGTAGAAAGATTTCCAAACATGCACTTAAACTTTT GGCTTTGTGCATGTTCAGAAGCCATCAATTGTCTGCTTTTTTCACTTTTAATTTTACAACTCAGGTATTTTTTTAGTTAT CTATTTTGTTAGCCTATTTCCTACTTCATTTTGGTTAATTTAATTTGGCAGAATCGAAGAATTCATCGACTATTTATTTC CTGAGGAAACTCAGACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCGGATGAT GATGATTAGCACTAGCAGTATCTTATCTTGGATCTGTACCTGAGTGTATTCTTTGGCAAGTCGATTTTGTGACTGAAGTT TGTGTTACAGAACTGCATCTGAGAACTTCTAAAACTGTGACCCACGATTGATTAAGGCAATAGATGGTCTGATCAGTACC AGAATTATTTATTGAGTGTACATATGTTCATAACATTTTCTATTTGGTACATGCTCAAACACTTGTTGATTCTTTTTCAT GTAATTCGCAAGTTTGCATGCTTCTCTTGTCATGGTCTGTTAAAAATTAAAATGATGACCTGGTCGGTTTTTATTGTCGA TAGGCTCTAATCAGAAATTTTAATTCCATTTAGAAATTTTAGATTTCTTGTGATGGTCAATGTAGTTATGGTACAACTAC TTTGTGATGATATTTTAAGTTAGGATTGCTAAGTACTAACTACACATATCCTTGAGCTCGTGGGGTCTATTATAAATTTA TAATCGTGTTTTACTAAAGTTTGGTGATTTATTTGTTTAATTTAATTATCTTACTAAAACCATAGGCAATGGCGGATCTT GGAGAAAAAGTCTGGGGGGGCTAAAATAAGATTTCAATACATAAAGTAATTTTTTTTACTTAGCAATACTCATACCAAAA AAT
CDS sequence (LotjaGi1g1v0723300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCGAGAGAAGGAGACCCGAACCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGAC CCGCGTCAAGAACAAAACCCCCGCTCCGATTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGG CGGAGATACGCCCACCGAAGCTGAAAATCACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTC GAGGACCTGATTCGCCGTGTCCGATGGAACACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTT CAAACGTGCGCGTTCTGTTTGGGAGCGCGCGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGG TGGAGATGAAGAACAAGTTCATCAACCATGCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAG CTCTGGTATAAGTATATTCACATGGAGGAGATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAA GTGGATGCCGGACCAGCAGGGCTGGCTCTCGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGA TTTTCGAGCGGTTCGTGCTGTGCCACCCGAGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAA GTTGCCAAGGCAAGGAATGTGTACGAGCGGGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGC ATTTGCGGAGTTTGAGGAGCGGTGTAAGGAGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCA AGGGAAGGGCGGAGGATTTGTATAGGAAGTTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCT ATTGTGGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATAT AAGGTTGGAAGAGAGTGTGGGGAGTAAGGAAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGG AGGAGAAGCGGTACTGGCAGCGATATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGTG GAGCGAACAAGAGATGTATACAAGGAGTGTCTTAACTTAATACCTCACAAAAAGTTCTCGTTCGCGAAGATGTGGCTTCT AGCAGCCCAATTTGAAATACGTCAGCTGAATCTCACAGCTGCTCGTCAAATATTAGGAAATGCTATTGGAAAGGCTCCTA AAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAACATTGATCGATGCAGAAAATTGTATGAAAAA TATTTGGAGTGGGCGCCTGAAAATTGCTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCG AGCTAGATCCATATTTGAGCTTGCAATTGCCCAGCCAGCTTTGGACATGCCTGAGCTGTTGTGGAAGGCATACATTGACT TTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTA TGGATAAGCTATGCAGAATTTGAGGCAACAGCTGTGGATGAGGGTTTAGACTTACCAGAAGAAGAACAAAAGAAGCAATG CATTCAGCGTGCTAGAAGGGTGTTTGAAGAAGCTCTAAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGG CAATGCTATTGGAAAAATGGCTCAACCTGGAGGCTTCATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTG CCCAAGAAGCTCAAGAAGAGAAGACATGTTCCCACTGAAGATGGTTCTTCTAGAATCGAAGAATTCATCGACTATTTATT TCCTGAGGAAACTCAGACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCGGATG ATGATGATTAG
Protein sequence (LotjaGi1g1v0723300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSREGDPNLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKLKITDPHELGEYRLRKRKEF EDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRIDQ LWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYGEIDRARGIFERFVLCHPRVGAWIRYAKFEMKGGE VAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA IVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGSKERVRDVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDV ERTRDVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLTAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEK YLEWAPENCYAWSKYAELERSLSETDRARSIFELAIAQPALDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKV WISYAEFEATAVDEGLDLPEEEQKKQCIQRARRVFEEALNYFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKL PKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSDDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 7 | 694 | 688 | 0.0 | – | |
| PANTHER | 7 | 694 | 688 | 0.0 | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| SMART | 71 | 103 | 33 | 1.3 | ||
| SUPERFAMILY | 81 | 195 | 115 | 7.09E-24 | ||
| ProSiteProfiles | 91 | 192 | 102 | 12.528 | ||
| SMART | 105 | 137 | 33 | 1.9E-5 | ||
| Gene3D | 113 | 320 | 208 | 8.2E-51 | ||
| SMART | 139 | 171 | 33 | 7.9E-5 | ||
| SMART | 173 | 204 | 32 | 2.5E-4 | ||
| SUPERFAMILY | 194 | 263 | 70 | 3.79E-14 | ||
| SMART | 206 | 237 | 32 | 4.4E-6 | ||
| Pfam | 207 | 235 | 29 | 1.6E-13 | ||
| ProSiteProfiles | 225 | 258 | 34 | 6.903 | ||
| SMART | 239 | 274 | 36 | 1.3E-4 | ||
| Coils | 241 | 261 | 21 | - | – | |
| SUPERFAMILY | 267 | 523 | 257 | 3.72E-43 | ||
| SMART | 276 | 310 | 35 | 3.0 | ||
| SMART | 320 | 352 | 33 | 250.0 | ||
| Gene3D | 321 | 521 | 201 | 5.5E-46 | ||
| SMART | 354 | 388 | 35 | 1.8E-6 | ||
| SMART | 398 | 434 | 37 | 8.8E-5 | ||
| SMART | 436 | 467 | 32 | 93.0 | ||
| ProSiteProfiles | 455 | 558 | 104 | 7.981 | ||
| SMART | 469 | 501 | 33 | 1.4E-4 | ||
| SMART | 503 | 537 | 35 | 1.5E-4 | ||
| Gene3D | 522 | 607 | 86 | 2.5E-13 | ||
| Coils | 534 | 554 | 21 | - | – | |
| SMART | 539 | 570 | 32 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0723300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…