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LotjaGi1g1v0754600.4

Overview

Field Value
Gene ID LotjaGi1g1v0754600
Transcript ID LotjaGi1g1v0754600.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|K7MZM9|K7MZM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:132767362..132773696) extracted from Lotus japonicus Gifu genome v1.2.

GCCTTTTTAGCCATTACCTTTTCTAACTTTCTTCCATCCCTACTTCCAACTATGAAGGTATACTAATGGGGACGTTGCAT CTCACGTGAGGTGCTCCTGGTGGCGCCGTCTCTCTCTCGAGCTATCGTAGGTGGGCAACATGCCAACAAGGAAAGAAACA CAAAGATAAAGGGGCCGAAACATGTAGGAGAAAAACACCAAGGTTGAGTTGAGAAGGTTTCACTGCCGTTGTTTTTTCTT CTTCTCGTGTAAAAAACCTACCTCCGATCCAAAATCGCTATCACAATTACACAGCACCACCATTACCCTTTCTCCCCCGA TCCCAATTCCGATTAGGGGTTCGGAATTCACACAACAAGACTCTACAATTTCCCCATTTCATCACTACCCATTTCTCGTC TCTCTCTCAGGTATGTCAATTCACCCAAATCTTGATCTCCATCTCAAACCCTAGCACATTTCTTGAATCCCTGATCTTTT TTCTTTCTTTCTTCTTCAATTCCCTCGTATTGACTTGCCTGCTGGATTACTATGTGCAGAGGGGATCTCCGATCAGGTGG AATTTCATTGAGGGTTTAAGGTCTCTGCGAATTCTGACCAATGGAATGTGAATCTTGATCAGGCTCTCTCTTGTTTCTTG TTAGTATTGATTTTCATCACTTCCTCACTATCAATTCTACCTGCAACACTGTAAATTCTTGTAAAACTTTACTTCCTTAT ACTGGTTTTGTTAGTCTACCTTGATTTTCAATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTTCAAACCCAGA CAGACAGGGTCAAAACCCTGACAAGGGTCCAATTCCCCCACCTCTTAGTTTTGCAGCTGCACCTAGATTTCCTCCACCAA AATTACAGTTACATCAAGATCAAGCTTCTCCCCAACCCGCTAAAACCCCGAGCCCAAACCTTGTTTCACCGGCTAATGGG GTTACCACTGGCAGTCCAGTTCCTCACCTGAGCACCCCTCCTGGACCCCCTGTCTTCTCGTCGCCCGTCCGTCCGGCTGC TGTTCCGTTTCGCACATCGCCTGCATCACCTCAGCCACTTGCTTTTTCGTCAAGCTCTTCTTTGCCAACGTCATCGTCGC CCCAATATTCCAATGGAGCATTTGATTTGCAGTCCCAAGTTTCTGATAGTATAGCGGACCATGCTCCTGTTGGGGAGTCA TCCTTTGTTCTTTTTTCAGCTCATAAGGTATATTCTGCTTTATGTTAATTCATGATCAAGGCATGGAATTTTACATTGAG TTACTGTTCTTTAAGCTTATTATATAATGGGATAAATATTTTTTGTAGATATAAACATCTATTTTCCATTTGATAATTAG GTACTGAAACAGAAGAAACAAGCTAATGTGCCCAGTCTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAAC AGGCCCTCAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGCTGTGGTGGTTATGCAAATATATATTGCAACATACTAC TTGGCTCGGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGGTGGTGAGTACGTTGCGGCTAGCAAGGAA GATCTTCACAGATTTCCAGAACTGTCTTCACCCATGGTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCC AGTTTCAGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTAATAGATGAATGTTTAGATGAGCCTCACTTACACCATTTTC AGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTGTACTATATGGCCGTACTGTATCA GTGTATGACTTCTCAGAAGAATCAATTGCATCTGCTGATGTGCTTCCCGGGGATAAATCACCAAGTGAAGACTCTTTGAA AGCTTTGATTTATGGTACTGGCATATATTTGTCGCCCATGCATGCTTCATTACCTGTAGCACATTCCATATTTTCATCAT TGAGAGCATATAAGTTGAACATACCTGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTGGAGGTTGCTCTTGCTATA ATTCAGGGCCCGTCAGATCTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGTAATAGTAGAGTTATTGTCTGTGCTGGTGG ACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAAACAGCATTGA AATGGATGGAGAATCTGGGTCGTGAGGCTCATCGACAAAATACTGTGGTTGATATTTTATGTGCTGGAACATGCCCTGTA AGAGTTCCTATCTTACATCCTCTCGCAAAAGCATCAGGTGGAGTTTTTATTCTCCACGATGATTTTGGAGAAGCCTTTGG TGTTAATTTGCAAAGGGCATCAGCCAGATCAGCAGGCTCTCATGGACTGTTAGAATTGCGAACATCAGATGATATTCTCA TTACTCAAGTTGTGGGTCCTGGGGAAGAGTCACATGTAGACACCCACGAAACGTTTAAAAATGACACTGCTCTTTATATT CAGATGCTAAGTGTTGAAGAAACACAGTGCTTCTCTATCTCCATGGAAACCAAAGGGGATATCAAAAGCGATTTTGTCTT TTTCCAGTTTACTATTCAGTATTCAAATGTATATCAAGCTGATGTGTCCAGGGTCATTACTGTTAGACTGCCAACAGTAG ATAGCGTTTCAGGATATCTTGAGAGTGTTCAGGATGAAGTGGCCGCTGTCCTCATTGCAAAGAGAACTCTGTTACGAGCC AAAAACCAATCTGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATTAAGGATATTGCTCTTAAATTTGGCTCCCA ACTACCAAAATCAAAACTTCATTGCTTCCCAAAGGAGCTTTCTCTCTTACCTGAGATCCTTTTCCATCTCAGGAGAGGAT CGCTATTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGACCTA TCACTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGGACTTTTGAGGAGCTACCAGCTTATGATCTTGC AATGCAGTCTGATACTGCTGTTGTACTTGACCAGGGCACTGATGTCTTCATTTGGTTGGTATGCCTCCTATCATCTGTTC TAGCATTACATTTTCTTAGTTGGAATTGCAGATAAATTACTTAAGAGTCTTTATCTTTATATGTCTTTTTGGGGAATTAT TAGGATACTAATCTAATTGAATTATTGTTACTGCACTTGCTCTCCTGTCAGCGACAGTACATGTTTTTATATTAGCTTCC TGCTATGTATGACCGTTAACCATTAATGAAAAGGATTATTTCATGGTAATGGATTTGAAATGTCATTGCATTATGACTTG TAGAAAGTAGAAACCAGAGGGGTCTGGTCACAGTTGTTAACAATGTTAAGTCGTGCAATAGCACTGAGCCACATACAGTG GCACATTGGTGCTCATTTTCCCTCAATTTTGTTGTTCTCTTCTGTCTTGTTTTTGGGAATGGGAAGGCTGGCCAATCTTT TCTGCGTTGACATAGTCGCTGCCTTCGCTAACTAACAGCGGATGTGACTGGTGGTGGATGGCTAGCCAAAGAGTGCTACA ACTGGCAACCCACACTGAGGGAATAAAACTCAGTTTTTTATTCTTAGTCTCTTGACTGACAAGGTTCAAAACTTTGAACT TGTTGGTCAATAACTCTTAAACATGTTCCTGTTATTAAAATTCTTTACCTCTGACTTCAAAACTTTTCTGACTATGAAAC GTTTTAGTGTTTGATGTGTGCCATAAAAAAAACTATGGATCTGCTGGAGTGTTTGTTTTTGGCCGAGAGGCATAGCTCCC TCATGTTCGAGTTCTCTGTTTTATTTTACTCAAGTCTGTTATATTGGGGGGCTCTCTCTTTACCATTGATATAGAAGGGA CTAGGTCTATAATTTTCTTAATATTGTTGGATGTTTGAATGCGGTTGTTGTTGAAATAAACCTGACATGAGGTCTGTTTA TGAATCTTTAGTTGCATTGCTCTAAATTGTACATTTTGTCTTGATTTTACCAAAATTTTATTTTGGTCTCTCCAGTGTCC TTTGTAACAATTTTCAACCATATAGTTTTAAATTGTTGTAATTAAGCCTCCAATAATTTTTTGTTGATGTACTTTTTCTG GTCTGGCAAAAAACCTCTTCTGCTTATATGACATTCAGTTTGATGATGGGACACCCATTTTTATAACATGGAGACACACG CAACATCACAAATAGTGTCTATACATCAACAAGATTGCAACTTCAATTGCATGCTGAAACACTTGTCGGCATCAAGTTGC TATTTAAACTAGGATATTGAAACTGAAATTTGATTAAGTTAATTAGTCCAGAAGGGTAATTCAGGCTGAACTTTGCGCTC ATGAATATAGCATTATATATTTCTAGCTTTTTTTTGTTGGTCGAATATTTTACTAGCTTAAGTGGTAGTTTTATTAACAT ATTTTTTGTTGGCTGTGTTTCTTGTTTCTTTCCCTGTTTCTAATTTTCGTTTTCTTTCTGTTTGTTTTCTACTAATATAT GTTTGTCTAATATTGATGTATGGACCTAGGGTGCTGAACTTGGAGCAGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCA TGCAGGACATTAGCTGAAGAACTGACTGAATTCCGTTTTCCAGCTCCTCGTATCCTTGCTTTCAAGGTTTATTTTTCTTT ACTATTCATACCAGTTTCAGCTTCTGCTTTATAAGGTATACACTCTAACATACAGTTTACATTTGAAACAGGAGGGTAGC TCCCAAGCTCGATATTTTGTCTCTCGTCTCATACCAGCTCACAAAGATCCTCCTTATGAGCAGGTGAACAGCCCTATCAC TATATTCGTTATTGTGAAACTCATTAGACATGTTGTTTGCCTCATTGATTTCACTTTTGTTTCCTGGTCCAAAAACCAGC GTCAATTTGAAGATTGGTATATTGACATTGAATAATGCTACTTTTGCAGGAGGCAAGATTCCCTCAACTCAGGACATTGA CACAAGAAGCGCGGACAAAGCTGAAAAGCAGCTTTGTTCACTTCGACGATCCTAGCTTTTGTGAGTGGATGCGAAGTTTG AAAGTGGTGCCACCCCAACCGAGATGATGACCATTCTGCTGTAGGTGATTTGGTGGGTTAATTTATGAGAGCCCGTAATG GTCTTGGGCATTGAATTTTCCAACTTGTTGCGTATTCTTTGTTGAGTTGTTGACACTGGGTTTTTTCCATGTTTTGTGCA ACACAGTGTTCTTGTAGATGTCCCAAATCTCTCGCTTCAGTGCCTCCTTCCATTGATTTTGTTCACCTCCGAAGAAATAA TCTTTTTTTTTTGTGTTGGGAGGGGGTGACAGAAATTTTTACAATTTACATGACAGTTAATATGTTTCCATAGAGCAATA ATGGACTTCTTTTTATTTATATTTATAGCACTTGATGATGGCCAATTTTTTTTTTTCTCTAAACTCTTTAGTCTGCGAGT ATGTTTCGAAAATTGATTTAATTTAAAAAATGGATTTATTGCTTGAAAGTTCTTGTGTATAAGTACTGGAATTAAAATGA ATAAATTCAAAATCAGCATAGTTCCCAATCTTAATGAATACTCAGAATCCTCTTTTGACCATGCTTGTAGAACGTCAGGA CACAGGAATATTTCCATGAATGACCAACGTTATTAGTAAATTTAAATTCTGTTGACTAACAAGTTTTAGTGTTACAGACT TACAATGTTACCATTCCTCTGAACTGCTATTACTGTATTATGATAAAAACAAAGAAGTTTATATAAACTTCTGTGCATCC ATTTGCATTATTCTTACATTTATAGCATGTGTTAAAGGGGGTTTCTAGTCAAATGCAAAAGAGATTTGATTCATATATGT CTCTCGTTTTTCTTTATTCTTTTCCTTTATTTCTCTTAATGTAAGTAAATTGTAAGTGTGAATAGCAATGTAGAATAATC AAATAAAAGTAGGTTCTGCCAAGCTAGAATCTGAATCTTGATAATATATGATGACAACTATTCTCTCAAACCTTTGAGGG TTAAATACAATGATTAGTAGTAGTGTTTGAGTGAAGATGTATTTTCCCTAATTATCTAAGATACTTACATCAGTCATCTC CTCCCTATATCAATCAATATATATTAGAAAATAATTAAATAGCTTCTCTTCTGTTGACACGTATTCCTTGATTCTAAAAC AAATCTTAAAACCGA 

CDS sequence (LotjaGi1g1v0754600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTTCAAACCCAGACAGACAGGGTCAAAACCCTGACAAGGGTCC AATTCCCCCACCTCTTAGTTTTGCAGCTGCACCTAGATTTCCTCCACCAAAATTACAGTTACATCAAGATCAAGCTTCTC CCCAACCCGCTAAAACCCCGAGCCCAAACCTTGTTTCACCGGCTAATGGGGTTACCACTGGCAGTCCAGTTCCTCACCTG AGCACCCCTCCTGGACCCCCTGTCTTCTCGTCGCCCGTCCGTCCGGCTGCTGTTCCGTTTCGCACATCGCCTGCATCACC TCAGCCACTTGCTTTTTCGTCAAGCTCTTCTTTGCCAACGTCATCGTCGCCCCAATATTCCAATGGAGCATTTGATTTGC AGTCCCAAGTTTCTGATAGTATAGCGGACCATGCTCCTGTTGGGGAGTCATCCTTTGTTCTTTTTTCAGCTCATAAGGTA CTGAAACAGAAGAAACAAGCTAATGTGCCCAGTCTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAACAGG CCCTCAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGCTGTGGTGGTTATGCAAATATATATTGCAACATACTACTTG GCTCGGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGGTGGTGAGTACGTTGCGGCTAGCAAGGAAGAT CTTCACAGATTTCCAGAACTGTCTTCACCCATGGTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGT TTCAGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTAATAGATGAATGTTTAGATGAGCCTCACTTACACCATTTTCAGA GTTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTGTACTATATGGCCGTACTGTATCAGTG TATGACTTCTCAGAAGAATCAATTGCATCTGCTGATGTGCTTCCCGGGGATAAATCACCAAGTGAAGACTCTTTGAAAGC TTTGATTTATGGTACTGGCATATATTTGTCGCCCATGCATGCTTCATTACCTGTAGCACATTCCATATTTTCATCATTGA GAGCATATAAGTTGAACATACCTGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTGGAGGTTGCTCTTGCTATAATT CAGGGCCCGTCAGATCTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGTAATAGTAGAGTTATTGTCTGTGCTGGTGGACC GAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAAACAGCATTGAAAT GGATGGAGAATCTGGGTCGTGAGGCTCATCGACAAAATACTGTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGA GTTCCTATCTTACATCCTCTCGCAAAAGCATCAGGTGGAGTTTTTATTCTCCACGATGATTTTGGAGAAGCCTTTGGTGT TAATTTGCAAAGGGCATCAGCCAGATCAGCAGGCTCTCATGGACTGTTAGAATTGCGAACATCAGATGATATTCTCATTA CTCAAGTTGTGGGTCCTGGGGAAGAGTCACATGTAGACACCCACGAAACGTTTAAAAATGACACTGCTCTTTATATTCAG ATGCTAAGTGTTGAAGAAACACAGTGCTTCTCTATCTCCATGGAAACCAAAGGGGATATCAAAAGCGATTTTGTCTTTTT CCAGTTTACTATTCAGTATTCAAATGTATATCAAGCTGATGTGTCCAGGGTCATTACTGTTAGACTGCCAACAGTAGATA GCGTTTCAGGATATCTTGAGAGTGTTCAGGATGAAGTGGCCGCTGTCCTCATTGCAAAGAGAACTCTGTTACGAGCCAAA AACCAATCTGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATTAAGGATATTGCTCTTAAATTTGGCTCCCAACT ACCAAAATCAAAACTTCATTGCTTCCCAAAGGAGCTTTCTCTCTTACCTGAGATCCTTTTCCATCTCAGGAGAGGATCGC TATTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGACCTATCA CTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGGACTTTTGAGGAGCTACCAGCTTATGATCTTGCAAT GCAGTCTGATACTGCTGTTGTACTTGACCAGGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGGAGCAGATGAAG GAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTAGCTGAAGAACTGACTGAATTCCGTTTTCCAGCTCCTCGTATC CTTGCTTTCAAGGAGGGTAGCTCCCAAGCTCGATATTTTGTCTCTCGTCTCATACCAGCTCACAAAGATCCTCCTTATGA GCAGGAGGCAAGATTCCCTCAACTCAGGACATTGACACAAGAAGCGCGGACAAAGCTGAAAAGCAGCTTTGTTCACTTCG ACGATCCTAGCTTTTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCCCAACCGAGATGA 

Protein sequence (LotjaGi1g1v0754600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANPTQPNVGFTPSNPDRQGQNPDKGPIPPPLSFAAAPRFPPPKLQLHQDQASPQPAKTPSPNLVSPANGVTTGSPVPHL STPPGPPVFSSPVRPAAVPFRTSPASPQPLAFSSSSSLPTSSSPQYSNGAFDLQSQVSDSIADHAPVGESSFVLFSAHKV LKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGGYANIYCNILLGSGQWQCVICRKLNGSGGEYVAASKED LHRFPELSSPMVDYVQTGNKRPGFVPVSDSRMSAPVVLVIDECLDEPHLHHFQSSLHAFVDSLPPTTRLGIVLYGRTVSV YDFSEESIASADVLPGDKSPSEDSLKALIYGTGIYLSPMHASLPVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAII QGPSDLSRGVVKRSGGNSRVIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGREAHRQNTVVDILCAGTCPVR VPILHPLAKASGGVFILHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQ MLSVEETQCFSISMETKGDIKSDFVFFQFTIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAK NQSDAIDMRATIDERIKDIALKFGSQLPKSKLHCFPKELSLLPEILFHLRRGSLLGSIIGHEDERSVLRNLFLNASFDLS LRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDQGTDVFIWLGAELGADEGKSAAALAACRTLAEELTEFRFPAPRI LAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPQPR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 130 130 -
MobiDBLite 1 21 21 -
PANTHER 22 871 850 0.0
PANTHER 22 871 850 0.0
MobiDBLite 23 38 16 -
SUPERFAMILY 41 622 582 7.06E-27
MobiDBLite 48 78 31 -
MobiDBLite 79 93 15 -
MobiDBLite 106 130 25 -
Gene3D 184 248 65 3.4E-9
SUPERFAMILY 185 259 75 1.28E-16
Pfam 195 228 34 1.8E-9
CDD 269 511 243 2.2775E-61
Gene3D 275 519 245 3.1E-40
SUPERFAMILY 276 507 232 9.45E-37
Pfam 277 502 226 8.4E-12
Pfam 520 611 92 7.0E-11
SUPERFAMILY 624 724 101 3.92E-24
Gene3D 624 724 101 3.6E-21
Pfam 625 721 97 4.9E-11
Gene3D 725 817 93 3.6E-21
SUPERFAMILY 726 866 141 8.63E-28
CDD 726 817 92 4.68453E-15

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Biological process ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Cellular component COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0754600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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