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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006900
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.507s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0201099.1
n.a. PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max] gi|356540108|ref|XP_003538532.1| chr0 99355188 99361251 +
3 domain predictions
3 GO terms
Lj0g3v0203219.1
n.a. PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] gi|356534416|ref|XP_003535751.1| chr0 100715572 100728064 +
3 domain predictions
3 GO terms
Lj0g3v0222659.1
n.a. PREDICTED: protein transport protein SEC23-like [Glycine max] gi|356504446|ref|XP_003521007.1| chr0 114604199 114607839 -
3 domain predictions
3 GO terms
Lj0g3v0242929.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135229|ref|XP_004502262.1| chr0 126025894 126033571 -
3 domain predictions
3 GO terms
Lj0g3v0332229.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173796045 +
3 domain predictions
3 GO terms
Lj0g3v0332229.2
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173795808 +
3 domain predictions
3 GO terms
Lj1g3v4804040.1
n.a. PREDICTED: protein transport protein Sec24-like At3g07100-like [Cicer arietinum] gi|502113027|ref|XP_004494519.1| chr1 57825127 57833622 -
3 domain predictions
3 GO terms
Lj1g3v4830280.1
n.a. PREDICTED: protein transport protein Sec23A-like [Glycine max] gi|356572844|ref|XP_003554575.1| chr1 58331898 58337418 -
3 domain predictions
3 GO terms
Lj3g3v2993440.1
n.a. PREDICTED: protein transport protein SEC24-1-like [Glycine max] gi|356542764|ref|XP_003539835.1| chr3 37062123 37069899 -
3 domain predictions
3 GO terms
Lj4g3v2576080.1
n.a. PREDICTED: protein transport protein Sec23A-like [Cicer arietinum] gi|502135226|ref|XP_004502261.1| chr4 34505126 34509491 -
3 domain predictions
3 GO terms
Lj5g3v2241210.2
n.a. PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] gi|356534416|ref|XP_003535751.1| chr5 32354970 32369267 +
3 domain predictions
3 GO terms
LotjaGi1g1v0750200.1
n.a. Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|I1NBN5|I1NBN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 LjG1.1_chr1 132252161 132261292 -
2 domain predictions
3 GO terms
LotjaGi1g1v0750200.3
n.a. Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|I1NBN5|I1NBN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 LjG1.1_chr1 132253267 132260727 -
2 domain predictions
3 GO terms
LotjaGi1g1v0754600.3
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|K7MZM9|K7MZM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762835 132772946 -
2 domain predictions
3 GO terms
LotjaGi1g1v0754600.4
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|K7MZM9|K7MZM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132767362 132773696 -
2 domain predictions
3 GO terms
LotjaGi1g1v0754600.5
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|A0A151TXC4|A0A151TXC4_CAJCA Protein transport protein Sec23A; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132768470 132772946 -
2 domain predictions
3 GO terms
LotjaGi3g1v0268900.2
n.a. Protein transport protein SEC23; TAIR: AT2G21630.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|G7LEA6|G7LEA6_MEDTR Protein transporter Sec23-like protein; Found in the gene: LotjaGi3g1v0268900 LjG1.1_chr3 51661719 51692186 -
2 domain predictions
3 GO terms
LotjaGi3g1v0268900.3
n.a. Protein transport protein SEC23; TAIR: AT2G21630.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|G7LEA6|G7LEA6_MEDTR Protein transporter Sec23-like protein; Found in the gene: LotjaGi3g1v0268900 LjG1.1_chr3 51661972 51691917 -
2 domain predictions
3 GO terms
LotjaGi3g1v0476600.1
n.a. Protein transport protein Sec24-like; TAIR: AT2G27460.1 sec23/sec24 transport family protein; Swiss-Prot: sp|Q875V8|SC241_NAUCC Protein transport protein SEC24-1; TrEMBL-Plants: tr|I1LRH3|I1LRH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0476600 LjG1.1_chr3 89319548 89328265 -
2 domain predictions
3 GO terms
LotjaGi4g1v0368900.1
n.a. Protein transport protein SEC23; TAIR: AT1G05520.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|A0A1J7GI99|A0A1J7GI99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0368900 LjG1.1_chr4 74854238 74861997 +
2 domain predictions
3 GO terms
LotjaGi4g1v0368900.2
n.a. Protein transport protein SEC23; TAIR: AT1G05520.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|A0A1J7GI99|A0A1J7GI99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0368900 LjG1.1_chr4 74854252 74862156 +
2 domain predictions
3 GO terms
LotjaGi5g1v0346900.1
n.a. Protein transport protein Sec24-like family; TAIR: AT4G32640.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640; TrEMBL-Plants: tr|A0A151TQ51|A0A151TQ51_CAJCA Protein transport protein Sec24-like family; Found in the gene: LotjaGi5g1v0346900 LjG1.1_chr5 66306902 66322350 +
2 domain predictions
3 GO terms
LotjaGi5g1v0346900.2
n.a. Protein transport protein Sec24-like family; TAIR: AT4G32640.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640; TrEMBL-Plants: tr|A0A151TQ51|A0A151TQ51_CAJCA Protein transport protein Sec24-like family; Found in the gene: LotjaGi5g1v0346900 LjG1.1_chr5 66307293 66321595 +
2 domain predictions
3 GO terms
LotjaGi5g1v0346900.3
n.a. Protein transport protein Sec24-like family; TAIR: AT3G44340.1 hypothetical protein; Swiss-Prot: sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF; TrEMBL-Plants: tr|A0A151TQ51|A0A151TQ51_CAJCA Protein transport protein Sec24-like family; Found in the gene: LotjaGi5g1v0346900 LjG1.1_chr5 66312650 66321595 +
2 domain predictions
3 GO terms
LotjaGi6g1v0038800.1
n.a. Protein transport protein SEC23; TAIR: AT5G43670.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|G8A123|G8A123_MEDTR Protein transporter Sec23-like protein; Found in the gene: LotjaGi6g1v0038800 LjG1.1_chr6 7544073 7547855 +
2 domain predictions
3 GO terms
LotjaGi6g1v0103600.1
n.a. Protein transport protein SEC23; TAIR: AT1G05520.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|G7JBC0|G7JBC0_MEDTR Protein transporter Sec23-like protein; Found in the gene: LotjaGi6g1v0103600 LjG1.1_chr6 22749247 22756520 +
2 domain predictions
3 GO terms