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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0760100 |
| Transcript ID | LotjaGi1g1v0760100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133331408..133337145) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAGTTGTAATTAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGATGGTAGCAGCATATCCCAGCCTCACATTAT TGATAGGTTACAGTGGAGCCGATAGCAGCATATCCCACCCCATTTCCCGCCAAACCTTGCTTCATCGTTTATAGGTTTCG CGCCCATTTCTCAGACTCACTATCTCCACCATTTTCCTCCGCCGCTCTCTCTTTCTCTCCGCTTCTCCGATTCTCCCTGC AACGGTCTCTACCCTATCAAACCATGACCACCAAAGGCCTCAATTTCGATGCAGACACAGGTAAACCTTCCCCCTTCCCC TTCAATTCCATTTTCTTCGTCGTCTTCCGATTAAACCCATTCGTTTTTTCTCCACAGCCATGGCCAGAGAGTTTCTCTCC AACTTCGCAGATGACCATGGCGATGCCAAATACATGAAGATCCTTGTAAGTCCTATCTCTCAACAGTAAACTCAACTCCA GTTAACCACGCTGCTTAACCCTAATCCCCTTTTTCTCATTTTTCAATTTTCCCCCTTTTCAGCAAGACGTCGCAAATCAC AAATTCCGAGCAATAAACATCGAGCTCGAGGACTTAATTAACGTAAACTTCCTATCTTCCTTTTTGTTCAACATGGGTTT GTAAATTTCTAATCAAAATAACTGCTTTTGCTTTTTCTGTTTGTTTGTTTTTCATTTGGTTTTGTGTGTGTTTCAGTATA AGGATCTGGATGAAGAGTTTCTGAACCGTGTTATTGAGAATACCAGAAGGTATATTGGGATTTTCGCCGATGCTATCGAC GAGCTCATGCCGGCTCCCACTGAGACCTTTACTGATGATGATCATGACATATTGATGACTCAGAGATCTGATGAAGGGAC CGAAGGAGCTGATGGTTCCGACCCGCGTCAGAGGATGCCTCCTGAGATCAGGCGATACTAGTGAGATTTCATTCTTAGCT TTGTGTTCAAATTTTACACCCATGATTGCTCAGTTTTGTTTCACAAGACCAATTAATTAGGTTTAGCTTGTGATGGAGTT TTCAATGGGCATGGACGGGTATTATGTGAGGGTTGTTTATGCCTAAGCTTTTATATGACAGCCCTAATATTATTACCTGG TGGTGTATTGCAGTGAAGTTTACATCAGTGCAGCTTCAAAAGGACAGCCATTTACAATTAGGGAGGTGAAGGCTTCCAAC ATTGGTCAGCTTGTAAGGATATCTGGCATTGTGACTCGTTGCTCAGATGTTAAACCACTGATGCAAGTGGCTGTGTACAC GTGTGAGGAATGTGGTTTCGAAATTTACCAGGTAATTCATGAAAGAACTGCTTGAACTTTAGTTTTGATGTCCTCGTGTA CTAAAAGGTTTTATGATGAAGAAGGGAAATGAAAGAACTACAGTAGGAGTTTGGCTTGCCATGACTCACAAAATTCCTTA AAATTTCTTGATTTTAATCCCCGCCATTATGATTTGGTTGCTAGGATGTTAAGCTTTGATATTTAAAGTACTATTACAAT CTATTTAACCTTGTTAGTTTTTTGTCATGGATTTTTTCTTCTTTTGTGGGGTATGCCTAGGTTGTTATGGAATTTATGTG CCAATAGGTCTTTGACTTGGTTGTTTTCTCCCCTTCCTAAACAGGAAGTCACAGCTCGAGTCTTCATGCCTTTGTTTGAG TGTCCATCAGGGCGCTGTAAGACAAATGCAAATAAGGGGAATGTCATCCTTCAACTGAGAGCATCAAAGTTTTTGAGGTT TCAAGAGGTTTGTACTCTGTCTTTTGCAGGACTATATGCCCTGATGCATGCTTAATTACTCTTTGTGCGTTCCTGTTCAA TTGCTTATTAACTCAAGCATGAGAAATTTGCTATATGGTTAAACTGCAGGCAAAAGTTCAAGAGTTAGCTGAACATGTTC CGAAAGGCCATATTCCAAGAACGATGACTGTTCACTTTAGGGGAGAACTCACAAGAAAGGTTGGCTATTTTTTGCCAATT GCATTGGACTAATAGTTTCTATATCAAATATTATCAAGTACCTGAAATTGTGTTAAGTACATAGTTGAATTGTCTTTAGT ATATTGACTTATCATTGCAACCATTTTAAGTTATTGGCTTGCTGATAACTAACTGATTTTCTGTTACTGAACTTTAAGTG GCTAATTTTCAGTGACTGTTTATTAACTAAGGCTTGTTATGCATTGTCAGGTAGCTCCAGGTGATGTGGTTGAATTATCT GGGATTTTTCTTCCTATGCCTTACACTGGTTTTAGAGCAATGCGGGCTGGCCTAGTTGCTGACACGTACTTAGAGGCCAT GTCTGTAACTCATTTCAAGAAAAAATATGAAGAGTAAGTTACTTTTCAGATCTTAATTGATAATAGATGGCACCTTTTCT TTTCCATCCCAGTTTCTGTATAGTAGTTTGTCTTGGACTTATTTATGTGCTGCTTGGCTTTGTGTCCACTGTGATATTGA CATATTGTTATAACCCGCTTGCTCATAATAAAATCCATACAGTAGCTACTGGATAATCTTATTTAAAATAATTTGGGATA ACATAGAAGGTGCCTAATTGGTTAATTCTGTCATAGATATGAACTTCAAGGAGATGAGGAAAAGCAGATAGCAAGTTTAT CAGAAGATGGTGACATCTACAATAAGTTGGCACGGTCACTAGCCCCTGAAATTTTTGGACATGAAGATATTAAAAAAGCA CTGCTTCTTCTTCTTGTTGGTGCTCCCCATCGGAACTTGAAAGATGGGATGAAGGTGATGAATTATGTTTCTATAAATTG GTGGGCTTAAACTTTTTATTTATAAAATTCAAGTTGGATTAGTAGGGATTCAGACATGAAGTAGTTTATTGAACTTACAA TGGCATCAGTGTCTTGTATGGAATTTGTGCTTTCTTCTCTCCTTATTGTGCTACTGGTTATACTTTCTGTTAAGCTTATT TTGCATTGTGTTTGATTTATCATTTTGTATGAAATATCATATACATGATTAAACCACTAAATATCATAGTTTTCATTTAA TTGCAGATCAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACATATAAT CAATGTAGCACCCAGGGGTGTGTACACTACTGGCAGAGGAAGTAGTGGGGTTGGTCTGACTGCTGCTGTTCAGAAAGATC CTGTGACAAATGAGTTTGTCTTGGAAGGCGGGGCATTGGTAATGGAAACTTGTTTTTCAAGTCTAGTATTTCTTTCTATC CATATTGTGACTATGTTATACTTTAGGTTGTAAAAAGTAAAAACTAGAAAAACAAGGTGAGACACTTGAAATGCTGTCAG ACAGTACTGGTTGAATGAAGATGGGAAATGAGTCATGTGTGGAACCACTTCTTTAGCTCCTATAGGCTATATCTATACAT TCTATGACAGAATATTCTGATTTCAGGTGCTAGCAGATATGGGCATCTGCGCTATTGATGAATTTGACAAGATGGATGAA TCGGATCGTACTGCTATCCATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCGCTGAA TGCAAGGACTGCTGTGCTTGCTGCAGCTAATCCAGCATGGTATTATTTTTTCCTTATTTTTTTCATCTTTAAGTGGCAGA TAACATTTTATCAAGGTGCATTATGTGCTTCCAAAATCTAATTTTGTTCATATTTTATTGTGAAGGGGAAGATATGATCT AAGACGAACTCCAGCTGAAAATATTAATCTTCCTCCTGCCCTCCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATC GGGCAGATATGGATACTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCACCAAAATAAAGAGTCTCCCGCTCTGGGA TTCACTCCTCTTGAGCCATCTGTTCTCCGGTAAGTACAGAAGACAGACTGCTAATTCTTTTTTAATAAAAGCAAGATTGA GTTTTATTGCACATATCTTGCCCATTTGATTTATGGCTCTGAACACTCTTGTTCTTCATGTGTCTGTGTCAATGTTCTTT TTGCTAGAGAGAATGTTACAAACTAAATTATGTGTTGCTTTTATGTAGTGCATACATATCAGCTGCAAGAAGGTTGTCTC CTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATATTCAAGCATTCGTCAAGAAGAAGCAAGGTCTAATGCT CCCCACTCTTATACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAACTGTAAGTCTTTCTTCGTCTCCTCATTT TTTTACCAGGTGATACTGTTAGTTTCTTTAGCAGCGCATAAAATTATGTTTAAAAGAGGCAAATGATAGAAGTAATCAGG CATTTAGGGTTATATTGATTTTTCTCTGATGGTGATGATTTATGTGCATACTTTATCAGCTGAAAATATATCAATAAATC ATGAAGAGTGCAGTGTTTAAAATAAAAATTTAATAACCAAATTAACAATTTCTGGCCTTAAGAACTGTACCTAATTAGTC AGATAGAAAGACACTGAAAATTACTTATATTTCTGAGCAAAATTATTCCTTTATAATTTCTAAACAGGCACTAGCAAGAC TCCGTTTTTCTGACACTGTTGCTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTAC TCAGATGAGCGTCAAAAATCTGGTCTGGATGCCATATCTGATATATATTCCGTACTGCGAGATGAAGCTGCCAGAAGCAA GCAAATGGATATCAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGTGAGATCCCCACCCAAAGCTGAATTTTATT GTGTTGCAAAAAAAGTACTTTAACCATTGAATTCTATTGGCGAACAAATGAATAACCGAGTTTATGGTCATCATGATATC TTTTAAGGCTGGCTTTTGTTGAATAACTGAGTTTATGGTCGTCATGATATCTTTTATTCCATTATTTGTTGTAAGAATAG GAAAAGTGAGTTAAAATTTACACTATACACTAGAGAGACTAATAGTGTAGTGATACTCATTTTGTTTTGGTCTTGTGAAA TAGGGATAGGCCCTTTTGTCAATGAGATACTTGTTTAGTTTCCCCTCCTAGGTAATATCTTTTGACCCCATTTGTTATTT ATTTCGAACAGGGATACAGCGAGGCTCAGTTGAAAGAATGTTTGGAAGAGTATGCAGCATTAAATGTATGGCAGATACAT CCTCACACCTTCGACATACGATTTATTGATGCTTGATGCTTCCTTTCCCCCCCCATCAAAGCATGGTTTGCCTGCAGCAA TCTGGTTTTATACCGGGATTAGTGTTCAGTGGAACTTAGAAAATGATAGTACCTTGTAATGTGGTTTGATTTTACTTTGG TGATGTAGGTTCTTAGTATAGTTTAAGTTAGAAAGGCATTCTTGTTTGGTGTAACCGCTTAATTAAATTTCATATCCTGT TAGAAGTACATTTTTTTGGGTCCAAGAATCAGGTTGCTTCTTAATCATAAAATCTAGAACGGGAACAAAGCAACATTGCA TGAAGCCTCCTAGGTTTGAAATGTCTAGAGGCTTAAATGTTGATCTTAATGTATGCTTCCATAAATATGTAGAAGCTTTA CCAAGCCAGCCGTCTGCCTTTTGGAACGTCATCTGCAAAATGATAACGTAATGCTGCA
CDS sequence (LotjaGi1g1v0760100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACCAAAGGCCTCAATTTCGATGCAGACACAGCCATGGCCAGAGAGTTTCTCTCCAACTTCGCAGATGACCATGG CGATGCCAAATACATGAAGATCCTTCAAGACGTCGCAAATCACAAATTCCGAGCAATAAACATCGAGCTCGAGGACTTAA TTAACTATAAGGATCTGGATGAAGAGTTTCTGAACCGTGTTATTGAGAATACCAGAAGGTATATTGGGATTTTCGCCGAT GCTATCGACGAGCTCATGCCGGCTCCCACTGAGACCTTTACTGATGATGATCATGACATATTGATGACTCAGAGATCTGA TGAAGGGACCGAAGGAGCTGATGGTTCCGACCCGCGTCAGAGGATGCCTCCTGAGATCAGGCGATACTATGAAGTTTACA TCAGTGCAGCTTCAAAAGGACAGCCATTTACAATTAGGGAGGTGAAGGCTTCCAACATTGGTCAGCTTGTAAGGATATCT GGCATTGTGACTCGTTGCTCAGATGTTAAACCACTGATGCAAGTGGCTGTGTACACGTGTGAGGAATGTGGTTTCGAAAT TTACCAGGAAGTCACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAGGGCGCTGTAAGACAAATGCAAATAAGG GGAATGTCATCCTTCAACTGAGAGCATCAAAGTTTTTGAGGTTTCAAGAGGCAAAAGTTCAAGAGTTAGCTGAACATGTT CCGAAAGGCCATATTCCAAGAACGATGACTGTTCACTTTAGGGGAGAACTCACAAGAAAGGTAGCTCCAGGTGATGTGGT TGAATTATCTGGGATTTTTCTTCCTATGCCTTACACTGGTTTTAGAGCAATGCGGGCTGGCCTAGTTGCTGACACGTACT TAGAGGCCATGTCTGTAACTCATTTCAAGAAAAAATATGAAGAATATGAACTTCAAGGAGATGAGGAAAAGCAGATAGCA AGTTTATCAGAAGATGGTGACATCTACAATAAGTTGGCACGGTCACTAGCCCCTGAAATTTTTGGACATGAAGATATTAA AAAAGCACTGCTTCTTCTTCTTGTTGGTGCTCCCCATCGGAACTTGAAAGATGGGATGAAGATCAGAGGAGATTTACATA TATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACATATAATCAATGTAGCACCCAGGGGTGTGTAC ACTACTGGCAGAGGAAGTAGTGGGGTTGGTCTGACTGCTGCTGTTCAGAAAGATCCTGTGACAAATGAGTTTGTCTTGGA AGGCGGGGCATTGGTGCTAGCAGATATGGGCATCTGCGCTATTGATGAATTTGACAAGATGGATGAATCGGATCGTACTG CTATCCATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCGCTGAATGCAAGGACTGCT GTGCTTGCTGCAGCTAATCCAGCATGGGGAAGATATGATCTAAGACGAACTCCAGCTGAAAATATTAATCTTCCTCCTGC CCTCCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATCGGGCAGATATGGATACTGATCTTGAAATGGCCAGGCATG TTGTCTATGTCCACCAAAATAAAGAGTCTCCCGCTCTGGGATTCACTCCTCTTGAGCCATCTGTTCTCCGTGCATACATA TCAGCTGCAAGAAGGTTGTCTCCTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATATTCAAGCATTCGTCA AGAAGAAGCAAGGTCTAATGCTCCCCACTCTTATACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAACTGCAC TAGCAAGACTCCGTTTTTCTGACACTGTTGCTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTC TCTTTGTACTCAGATGAGCGTCAAAAATCTGGTCTGGATGCCATATCTGATATATATTCCGTACTGCGAGATGAAGCTGC CAGAAGCAAGCAAATGGATATCAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGGATACAGCGAGGCTCAGTTGA AAGAATGTTTGGAAGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTCGACATACGATTTATTGATGCT TGA
Protein sequence (LotjaGi1g1v0760100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTKGLNFDADTAMAREFLSNFADDHGDAKYMKILQDVANHKFRAINIELEDLINYKDLDEEFLNRVIENTRRYIGIFAD AIDELMPAPTETFTDDDHDILMTQRSDEGTEGADGSDPRQRMPPEIRRYYEVYISAASKGQPFTIREVKASNIGQLVRIS GIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSGRCKTNANKGNVILQLRASKFLRFQEAKVQELAEHV PKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPMPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELQGDEEKQIA SLSEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRNLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY TTGRGSSGVGLTAAVQKDPVTNEFVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA VLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDTDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYI SAARRLSPSVPRELEEYIASAYSSIRQEEARSNAPHSYTTVRTLLSILRISTALARLRFSDTVAQSDVDEALRLMQMSKF SLYSDERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 104 | 93 | 2.2E-8 | – | |
| SUPERFAMILY | 15 | 296 | 282 | 2.74E-62 | ||
| PANTHER | 16 | 705 | 690 | 2.6E-265 | ||
| Pfam | 16 | 134 | 119 | 7.2E-16 | ||
| PANTHER | 16 | 705 | 690 | 2.6E-265 | ||
| PRINTS | 122 | 134 | 13 | 6.8E-21 | ||
| SMART | 141 | 640 | 500 | 2.2E-302 | ||
| Pfam | 145 | 275 | 131 | 2.0E-32 | ||
| Gene3D | 145 | 274 | 130 | 2.0E-32 | – | |
| PRINTS | 160 | 171 | 12 | 6.8E-21 | ||
| Gene3D | 175 | 222 | 48 | 2.0E-32 | – | |
| PRINTS | 178 | 189 | 12 | 6.8E-21 | ||
| PRINTS | 195 | 207 | 13 | 6.8E-21 | ||
| PRINTS | 287 | 297 | 11 | 6.8E-21 | ||
| Gene3D | 313 | 645 | 333 | 2.6E-131 | – | |
| Pfam | 316 | 538 | 223 | 7.2E-101 | ||
| ProSiteProfiles | 328 | 534 | 207 | 95.497 | ||
| CDD | 331 | 638 | 308 | 0.0 | – | |
| SUPERFAMILY | 338 | 650 | 313 | 2.88E-42 | ||
| PRINTS | 369 | 384 | 16 | 1.1E-32 | ||
| PRINTS | 429 | 443 | 15 | 1.1E-32 | ||
| ProSitePatterns | 437 | 445 | 9 | - | ||
| PRINTS | 457 | 470 | 14 | 1.1E-32 | ||
| PRINTS | 481 | 493 | 13 | 1.1E-32 | ||
| PRINTS | 508 | 516 | 9 | 1.1E-32 | ||
| Pfam | 555 | 638 | 84 | 9.0E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. |
Expression pattern of LotjaGi1g1v0760100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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