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IPR001208

Description

IPR001208 is a MCM domain.

<p>Proteins shown to be required for the initiation of eukaryotic DNA replication share a highly conserved domain of about 210 amino-acid residues [[cite:PUB00004410], [cite:PUB00004436], [cite:PUB00005507]]. The latter shows some similarities [[cite:PUB00004422]] with that of various other families of DNA-dependent ATPases. Eukaryotes seem to possess a family of eight proteins that contain this domain. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called 'minichromosome maintenance proteins' with gene symbols prefixed by MCM. These six proteins are:</p> <ul> <li>MCM2, also known as cdc19 (in S.pombe).</li> <li>MCM3, also known as DNA polymerase alpha holoenzyme-associated protein P1, RLF beta subunit or ROA.</li> <li>MCM4, also known as CDC54, cdc21 (in S.pombe) or dpa (in Drosophila).</li> <li>MCM5, also known as CDC46 or nda4 (in S.pombe).</li> <li>MCM6, also known as mis5 (in S.pombe).</li> <li>MCM7, also known as CDC47 or Prolifera (in A.thaliana).</li> <li>MCM8, also known as as REC (in Drosophila).</li> <li>MCM</li> </ul> <p>These proteins are evolutionarily related and belong to the AAA+ superfamily. They contain the Mcm family domain, which includes motifs that are required for ATP hydrolysis (such as the Walker A and B, and R-finger motifs). Mcm2-7 forms a hexameric complex which is the replicative helicase involved in replication initiation and elongation, whereas Mcm8 and Mcm9 from and separate one, conserved among many eukaryotes except yeast and C. elegans. Mcm8/9 complex play a role during replication elongation or recombination, being involved in the repair of double-stranded DNA breaks and DNA interstrand cross-links by homologous recombination. Drosophila is the only organism that has MCM8 without MCM9, involved in meiotic recombination [[cite:PUB00094697], [cite:PUB00094698]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Biological process DNA replication initiation The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate.

Associated Lotus transcripts 37

Transcript Name Description Predicted domains Domain count
PREDICTED: DNA replication licensing factor mcm5-A-like [Cicer arietinum] gi|502151329|ref|XP_004508387.1| 23
PREDICTED: DNA replication licensing factor mcm5-A-like [Glycine max] gi|356562886|ref|XP_003549699.1| 16
PREDICTED: DNA replication licensing factor mcm6-like [Cicer arietinum] gi|502140186|ref|XP_004504098.1| 24
PREDICTED: DNA replication licensing factor mcm6-like [Cicer arietinum] gi|502140186|ref|XP_004504098.1| 7
PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| 23
PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| 23
MCM3 protein [Pisum sativum] gi|3894099|emb|CAA10166.1| 11
PREDICTED: DNA helicase MCM8-like [Cicer arietinum] gi|502111051|ref|XP_004493943.1| 14
PREDICTED: protein PROLIFERA-like [Glycine max] gi|356505629|ref|XP_003521592.1| 24
PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| 9
PREDICTED: DNA replication licensing factor MCM3 homolog [Cicer arietinum] gi|502141886|ref|XP_004504687.1| 27
PREDICTED: DNA replication licensing factor mcm2-like [Glycine max] gi|356521757|ref|XP_003529518.1| 25
PREDICTED: DNA helicase MCM9-like [Cicer arietinum] gi|502079392|ref|XP_004486246.1| 20
DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 23
DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 23
DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 23
DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 23
DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 23
DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 27
DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 26
DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q5JKB0|MCM4_ORYSJ DNA replication licensing factor MCM4; TrEMBL-Plants: tr|I1LJ93|I1LJ93_SOYBN DNA helicase; Found in the gene: LotjaGi2g1v0214600_LC 12
DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q5JKB0|MCM4_ORYSJ DNA replication licensing factor MCM4; TrEMBL-Plants: tr|I1LJ93|I1LJ93_SOYBN DNA helicase; Found in the gene: LotjaGi2g1v0214600_LC 12
DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262900 30
DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262900 30
DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0023500 30
DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0023500 30
DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q43704|MCM31_MAIZE DNA replication licensing factor MCM3 homolog 1; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0024000_LC 9
DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|A0A1J7GK28|A0A1J7GK28_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0024100_LC 22
DNA helicase; TAIR: AT2G07690.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|O80786|MCM5_ARATH DNA replication licensing factor MCM5; TrEMBL-Plants: tr|B3GNI3|B3GNI3_PEA DNA helicase; Found in the gene: LotjaGi4g1v0283800 28
DNA helicase; TAIR: AT1G44900.1 minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BKI8|MCM2_ORYSI DNA replication licensing factor MCM2; TrEMBL-Plants: tr|V7C891|V7C891_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0332400 29
DNA helicase; TAIR: AT5G44635.1 minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|F4KAB8|MCM6_ARATH DNA replication licensing factor MCM6; TrEMBL-Plants: tr|A0A072TUF1|A0A072TUF1_MEDTR DNA helicase; Found in the gene: LotjaGi6g1v0247200 32
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 20
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 22
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 20
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 20
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 20
DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd17760 CDD 1 2.70