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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033762
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.039s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0041639.1
n.a. PREDICTED: DNA replication licensing factor mcm5-A-like [Cicer arietinum] gi|502151329|ref|XP_004508387.1| chr0 13713936 13719092 +
2 domain predictions
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Lj0g3v0059679.1
n.a. PREDICTED: DNA replication licensing factor mcm6-like [Cicer arietinum] gi|502140186|ref|XP_004504098.1| chr0 19790393 19795581 -
2 domain predictions
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Lj0g3v0085309.1
n.a. PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| chr0 34113337 34118635 -
2 domain predictions
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Lj0g3v0085309.2
n.a. PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| chr0 34113755 34118635 -
2 domain predictions
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Lj0g3v0187359.1
n.a. PREDICTED: DNA replication licensing factor MCM3 homolog [Cicer arietinum] gi|502141886|ref|XP_004504687.1| chr0 91398004 91399538 +
2 domain predictions
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Lj1g3v3903020.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr1 45292664 45297580 -
2 domain predictions
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Lj1g3v4289040.1
n.a. PREDICTED: DNA replication licensing factor mcm4-B-like [Cicer arietinum] gi|502149334|ref|XP_004507486.1| chr1 50527008 50535109 -
2 domain predictions
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Lj1g3v4579080.3
n.a. PREDICTED: DNA helicase MCM8-like [Cicer arietinum] gi|502111051|ref|XP_004493943.1| chr1 54460299 54463532 -
2 domain predictions
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Lj1g3v4862820.1
n.a. PREDICTED: protein PROLIFERA-like [Glycine max] gi|356505629|ref|XP_003521592.1| chr1 58807720 58813196 +
2 domain predictions
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Lj4g3v0258690.1
n.a. PREDICTED: DNA replication licensing factor MCM3 homolog [Cicer arietinum] gi|502141886|ref|XP_004504687.1| chr4 3199415 3205112 -
2 domain predictions
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Lj4g3v2263980.1
n.a. PREDICTED: DNA replication licensing factor mcm2-like [Glycine max] gi|356521757|ref|XP_003529518.1| chr4 31410860 31416070 +
2 domain predictions
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Lj6g3v2204750.1
n.a. PREDICTED: DNA helicase MCM9-like [Cicer arietinum] gi|502079392|ref|XP_004486246.1| chr6 25495822 25513128 -
2 domain predictions
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LotjaGi1g1v0693900.1
n.a. DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 LjG1.1_chr1 126137626 126147709 +
2 domain predictions
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LotjaGi1g1v0693900.2
n.a. DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 LjG1.1_chr1 126137952 126147235 +
2 domain predictions
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LotjaGi1g1v0693900.3
n.a. DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 LjG1.1_chr1 126137998 126147235 +
2 domain predictions
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LotjaGi1g1v0693900.4
n.a. DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 LjG1.1_chr1 126137998 126147339 +
2 domain predictions
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LotjaGi1g1v0693900.5
n.a. DNA helicase; TAIR: AT3G09660.1 minichromosome maintenance 8; Swiss-Prot: sp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM8; TrEMBL-Plants: tr|K7MYY7|K7MYY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693900 LjG1.1_chr1 126138171 126147235 +
2 domain predictions
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LotjaGi1g1v0722700_LC.1
n.a. DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q5JKB0|MCM4_ORYSJ DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0722700_LC LjG1.1_chr1 129396870 129408611 -
2 domain predictions
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LotjaGi1g1v0722700_LC.3
n.a. DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q5JKB0|MCM4_ORYSJ DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0722700_LC LjG1.1_chr1 129397768 129408548 -
2 domain predictions
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LotjaGi1g1v0760100.1
n.a. DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 LjG1.1_chr1 133331408 133337145 +
2 domain predictions
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LotjaGi1g1v0760100.2
n.a. DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 LjG1.1_chr1 133331820 133336723 +
2 domain predictions
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LotjaGi3g1v0262900.1
n.a. DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262900 LjG1.1_chr3 48654443 48660257 +
2 domain predictions
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LotjaGi3g1v0262900.2
n.a. DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262900 LjG1.1_chr3 48654627 48659910 +
2 domain predictions
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LotjaGi4g1v0023500.1
n.a. DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0023500 LjG1.1_chr4 2898816 2904927 -
2 domain predictions
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LotjaGi4g1v0023500.2
n.a. DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0023500 LjG1.1_chr4 2899714 2904824 -
2 domain predictions
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LotjaGi4g1v0024100_LC.1
n.a. DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|A0A1J7GK28|A0A1J7GK28_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0024100_LC LjG1.1_chr4 2948658 2950548 -
2 domain predictions
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LotjaGi4g1v0283800.1
n.a. DNA helicase; TAIR: AT2G07690.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|O80786|MCM5_ARATH DNA replication licensing factor MCM5; TrEMBL-Plants: tr|B3GNI3|B3GNI3_PEA DNA helicase; Found in the gene: LotjaGi4g1v0283800 LjG1.1_chr4 65609748 65615275 +
2 domain predictions
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LotjaGi4g1v0332400.1
n.a. DNA helicase; TAIR: AT1G44900.1 minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BKI8|MCM2_ORYSI DNA replication licensing factor MCM2; TrEMBL-Plants: tr|V7C891|V7C891_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0332400 LjG1.1_chr4 71146966 71152826 -
2 domain predictions
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LotjaGi6g1v0247200.1
n.a. DNA helicase; TAIR: AT5G44635.1 minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|F4KAB8|MCM6_ARATH DNA replication licensing factor MCM6; TrEMBL-Plants: tr|A0A072TUF1|A0A072TUF1_MEDTR DNA helicase; Found in the gene: LotjaGi6g1v0247200 LjG1.1_chr6 55943684 55949455 +
2 domain predictions
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LotjaGi6g1v0351000.1
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66296770 66304347 -
2 domain predictions
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LotjaGi6g1v0351000.2
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66296770 66304682 -
2 domain predictions
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LotjaGi6g1v0351000.3
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66297475 66304338 -
2 domain predictions
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LotjaGi6g1v0351000.4
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66297870 66304338 -
2 domain predictions
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LotjaGi6g1v0351000.5
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66298596 66304338 -
2 domain predictions
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LotjaGi6g1v0351000.6
n.a. DNA helicase; TAIR: AT2G14050.1 minichromosome maintenance 9; Swiss-Prot: sp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM9; TrEMBL-Plants: tr|K7M9S9|K7M9S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0351000 LjG1.1_chr6 66298634 66304338 -
2 domain predictions
 –