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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0798000 |
| Transcript ID | LotjaGi1g1v0798000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136815175..136817825) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGCACCTCTAATGTTGTGCTGGAAGAACAAGAAGCTAATCTTAATCTGTGAAGGAAAGCTTTTGTCACCTTCAAGTT TTGAGGGCTTTATCAACAATGTCCCATGGAAAGTGACAATAGCTTGTTGATCCTTCCAGACTAGAGAAGCTTTTTGTCTC TTCTTGCACAACTGAGTGGTGCATGTGGCTACTGGTTCTCTTTTATGGCTTTTATTTAGGTATGGAGTTGATTTAATTTA CAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTACTGTCGCCTCGATTTGAACACAGTGAAG GTGTGCTCTCGTTATACCTATCCTAGAATATTATGCTTTTTTTTTGCATATTTGTAGATTCTTATTTAACGGAAAATGTT GTGTTGTCATAGAACATGAAGGTGAATCTGAAGAGGATCATGACAAGACTTATTATGTTTTCCTTCCTCCTGAGTTATGC CTAGTACACCCTCTGCCTGGATCACTTGTTCGTGGTGCTCAGAGGTTGCCTTCAATAATGAGGAGGGTGGAAAGCTTGCT ACTTGCAGTTGAGCTTAAGAATATGATAAATTATCCCGTCCAGGCTTTAAAGGTATCTTCTCGGCTCAAGGTAGTTTAAC TTCTACTGTTAGTTTTATCAGTTAACTCACGTCCTCTACATGAACAGATCTTGGAAGCCTTGACTGCTGCCTCTTGCCAG GAGACATTCTGCTATGAAAGGGCTGAGCTTCTAGGAGATGCTTACTTGAAATGGGTTGTTAGTCGATTTCTCTTCCTAAA GTACCCCCAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTGTTATATCAGTTTGCAT TAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCTAGATGGGCGGCTCCTGGGGTGCTGCCTGTC TTTGATGAGGATACGAAGGATGGAGAGTCATCTATATTTGACCAGGACCAGTCCATTTCTAAGACGGGGATGATGGACAA CTCTGATAGATTTGACAATGAAATGGAAGATGGTGAGATTGAGAGTGATTCAAGTTCTTATAGAGTTCTGTCCAGCAAGA CACTTGCAGATGTAGTGGAAGCTCTGATTGGGGTATATTATGTCCAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAA TGGATTGGTATTCAGGTTGAGTCTGATCCTGATGAGATGGAATGTACAAGAAAGCCATTCAGTGTTCCAGACAGCATAAT TAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATTTGAAGTTTAATGACAAGGGGTTGCTGATAGAAGCCATAA CTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTAGAGTTCGTTGGTGATGCTGTCTTGGACCATCTT ATAACCAGGCACTTGTTTTTCAGTTACACAGATCTGCCACCGGGACGACTGACTGACCTTCGGGCTGCTGCTGTAAACAA TGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCACCTGCATCTCCGTCACGGATCCAGCGCCCTAGAAAAACAGG TCTTATTTCTTTCTTAAGACTTATTCTTACTTGGAGATGGATCACATATAATCTCTATCCATAATGTTCCTAATTTCTTG AGCATGTCAGTCATCTTTTCGGATACTCCTGACATTGTGCTTTTGGTTGTCTACAGATTAAAGAATTTGTTAAGGAAGCT CAAAATGAATTGTCACAGCCAGGGTTTAACTCCTTCGGTCTGGGGGACTGCAAAGCTCCAAAGGTCCTTGGTGACATTGT TGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGAATACTGCTGCTGTATGGAAGGTTAGCGCCTAGCTTTTAA ACATATACCATTATCCTCCTTCATTTTTTTACCAAAATGGGAATAAAATTTAAATTGGAAGACATTGTTGGTCTTGCAAA ATTTTCAGGTTTTTCAGCCTCTTTTACATCCTATGGTTACCCCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAA GAGCGATGCCAGCAGCAGGCAGAAGGTCTAGAGTACAGAGCAAGTCGAATTGGCAATTTGGCTACTGTTGAAGTATTCAT TGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTG CTTTGAAAGAGAAGGAAGTGGTAAAAACTCCGGAGAAGAATGATGAAAACATGAAGAAGAGTGGAAACCAGACATATACC AGACAGACATTAAATGATATCTGTCTGCGAAGAAATTGGCCTATGCCATTGTACAGGTATGAAACTATTAAGTTACTTAT ATAGCAGCATGAATGGTTGGTGGTTATAGGGCCAAAATGACTTAATTTATTTGTATACTAAAACTTGTAGGTGTGTGAGT GAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGCGTGAATACTACTGATAGAGGATGGACAGATGAATG TGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAGCTACTAAACAAATTAT ATTCATCGTAG
CDS sequence (LotjaGi1g1v0798000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAGGGTGGAAAGCTTGCTACTTGCAGTTGAGCTTAAGAATATGATAAATTATCCCGTCCAGGCTTTAAAGATCTT GGAAGCCTTGACTGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCTGAGCTTCTAGGAGATGCTTACTTGAAAT GGGTTGTTAGTCGATTTCTCTTCCTAAAGTACCCCCAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTC AGTAACATGGTGTTATATCAGTTTGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCTAG ATGGGCGGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGAGAGTCATCTATATTTGACCAGGACCAGT CCATTTCTAAGACGGGGATGATGGACAACTCTGATAGATTTGACAATGAAATGGAAGATGGTGAGATTGAGAGTGATTCA AGTTCTTATAGAGTTCTGTCCAGCAAGACACTTGCAGATGTAGTGGAAGCTCTGATTGGGGTATATTATGTCCAAGGTGG TAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCAGGTTGAGTCTGATCCTGATGAGATGGAATGTACAAGAA AGCCATTCAGTGTTCCAGACAGCATAATTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATTTGAAGTTTAAT GACAAGGGGTTGCTGATAGAAGCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTAGAGTT CGTTGGTGATGCTGTCTTGGACCATCTTATAACCAGGCACTTGTTTTTCAGTTACACAGATCTGCCACCGGGACGACTGA CTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCACCTGCATCTCCGT CACGGATCCAGCGCCCTAGAAAAACAGATTAAAGAATTTGTTAAGGAAGCTCAAAATGAATTGTCACAGCCAGGGTTTAA CTCCTTCGGTCTGGGGGACTGCAAAGCTCCAAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTG ACAGTGGGAGGAATACTGCTGCTGTATGGAAGGTTTTTCAGCCTCTTTTACATCCTATGGTTACCCCAGAGACTTTGCCA ATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCAGAAGGTCTAGAGTACAGAGCAAGTCGAATTGGCAA TTTGGCTACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAAT TAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGTAAAAACTCCGGAGAAGAATGATGAAAACATGAAG AAGAGTGGAAACCAGACATATACCAGACAGACATTAAATGATATCTGTCTGCGAAGAAATTGGCCTATGCCATTGTACAG GTGTGTGAGTGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGCGTGAATACTACTGATAGAGGATGGA CAGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAGCTACTA AACAAATTATATTCATCGTAG
Protein sequence (LotjaGi1g1v0798000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRVESLLLAVELKNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV SNMVLYQFALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSIFDQDQSISKTGMMDNSDRFDNEMEDGEIESDS SSYRVLSSKTLADVVEALIGVYYVQGGKNAANHLMKWIGIQVESDPDEMECTRKPFSVPDSIIRSVDFDALEGALNLKFN DKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHLHLR HGSSALEKQIKEFVKEAQNELSQPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRNTAAVWKVFQPLLHPMVTPETLP MHPVRELQERCQQQAEGLEYRASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVVKTPEKNDENMK KSGNQTYTRQTLNDICLRRNWPMPLYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELL NKLYSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 565 | 565 | 0.0 | – | |
| PANTHER | 1 | 565 | 565 | 0.0 | – | |
| SUPERFAMILY | 3 | 205 | 203 | 2.35E-35 | ||
| SMART | 24 | 207 | 184 | 6.5E-36 | ||
| CDD | 26 | 205 | 180 | 3.4181E-35 | ||
| ProSiteProfiles | 28 | 187 | 160 | 25.802 | ||
| Pfam | 42 | 187 | 146 | 6.6E-31 | ||
| SUPERFAMILY | 222 | 395 | 174 | 8.02E-39 | ||
| Gene3D | 224 | 402 | 179 | 4.3E-59 | ||
| ProSiteProfiles | 228 | 376 | 149 | 35.475 | ||
| SMART | 243 | 399 | 157 | 3.5E-46 | ||
| CDD | 244 | 399 | 156 | 4.53307E-45 | ||
| Pfam | 263 | 376 | 114 | 1.9E-24 | ||
| ProSitePatterns | 263 | 271 | 9 | - | ||
| SUPERFAMILY | 358 | 485 | 128 | 4.3E-13 | – | |
| ProSiteProfiles | 402 | 465 | 64 | 10.824 | ||
| Gene3D | 403 | 475 | 73 | 1.7E-8 | – | |
| SMART | 403 | 464 | 62 | 3.4E-6 | ||
| ProSiteProfiles | 487 | 562 | 76 | 11.528 | ||
| SMART | 488 | 561 | 74 | 6.1E-11 | ||
| Pfam | 488 | 560 | 73 | 3.6E-15 | – | |
| SUPERFAMILY | 491 | 561 | 71 | 2.48E-12 | – | |
| CDD | 492 | 553 | 62 | 2.41277E-12 | ||
| Gene3D | 493 | 563 | 71 | 5.3E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0798000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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