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PS00517

Source: ProSitePatterns

Description

Ribonuclease III family signature.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004525
Molecular function Ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Lj0g3v0041629.1
– PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1|
Domains
40
Lj0g3v0041629.2
– PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1|
Domains
40
Lj1g3v1788430.1
– PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1|
Domains
38
Lj1g3v5034650.1
– PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356571230|ref|XP_003553782.1|
Domains
11
Lj6g3v1629870.1
– PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356532427|ref|XP_003534774.1|
Domains
10
LotjaGi1g1v0372300.1
– Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300
Domains
41
LotjaGi1g1v0791500.1
– Ribonuclease 3-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A151TUM2|A0A151TUM2_CAJCA Endoribonuclease Dicer isogeny 2a; Found in the gene: LotjaGi1g1v0791500
Domains
13
LotjaGi1g1v0798000.1
– Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000
Domains
44
LotjaGi1g1v0798000.2
– Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000
Domains
18
LotjaGi1g1v0798000.3
– Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000
Domains
18
LotjaGi1g1v0798000.4
– Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000
Domains
44
LotjaGi1g1v0798000.5
– Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000
Domains
44
LotjaGi4g1v0283700.1
– Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp|P84634|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr|K7MKZ2|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700
Domains
45
LotjaGi6g1v0269600.1
– Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600
Domains
37
LotjaGi6g1v0269600.2
– Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600
Domains
37

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd18802 CDD 1 6.67