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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0217200 |
| Transcript ID | LotjaGi2g1v0217200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein; TAIR: AT3G24530.1 AAA-type ATPase family protein / ankyrin repeat family protein; Swiss-Prot: sp|O22034|CFXQ2_CYACA Protein CfxQ homolog; TrEMBL-Plants: tr|V7C640|V7C640_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0217200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67168881..67172384) extracted from Lotus japonicus Gifu genome v1.2.
TCCTTGGAATTCAGCATGAACAGGACTCAGGATCAAAGGTCAAGGCCTGCTAAGCCCGCCACCATTCATGCCTATGCTCT TTCTGGGGACCTTGTTGGACTCCAGAGGCTACTTCGGGATAACCCTTCTCTTCTCAATGAGAGAAACCCTGTTGTAAGAT CTCTACTTTTCTTCATTTTGATCAATTGGGTATCTTCAAAAAATGATCTTTTTTGTTGTTGATGGTGTATGTTCTTCATT GAGTTTAAAAGTTAGATCTTTATTGTGTTCTGTGTGGAAAAGTTCATGCTTTTGTTAATGGGTTGGTGTTGGTTTTGAAT CATCTGGATTCATGTGGTTAATGTTCAGATCTACTTGGTAGTGACTCTTGGATTAATCAACCTGGTGTAGTTTGTCTCCT TGGTTAATATTATGATAGGTTTGTAGATACAAGTGATGCATGTTTTATCTTATGAAAGACCAGACATGGTAGGGTGGTAG GAGAAGATAGCAAACTTTAGATTACCTTGATTGCTAGCCTTGCTAATTCCTCATTCTTAGCTATCCTAGTACTTTTTCCT TTCAATATGAGAGAAATGTGATAGATGCATAGTGCCTTGGGTGTGGAATAGCCTGGAAAATGGCAACAATGGAGATTGCT CTGGATGGTGCAGATTATTGGCAGATGGAAGTTGCTTGTAGAAGAGGAATTTAGTGGATTTTCAAAGGGAAAATTTTAAA ATTTTCAAGGGAAATGGGGAAAGGATTATTTTTATGGCTTCTCTTAGCTGATATTTTTTTGGGTTTTGGGGTTTATGTGA AGGGTTTGGAGGGCATCATAGAATTGATGATCTGTTTCTCCTAGTGCTTCCTTTTGGGTTTCTAGTAATAAGGTTTTAAA AAGGTGTCTATATCCTGGCATATTAATTTCTTACTTTACAGGTTTCCATATGATTCATGTTAAATTTTATTTACATTGTA TGGCTGAGATCTAATTTTTTTTTTCAAATACAGATGGCACAGACACCACTTCATGTTTCTGCCGGTCACAATAGGGCTGA CATAGTTAAGTTTCTTCTTGATTGGCAAGGACCAGATAAGGTTGAGATGGAGGCCAAGAATATGGTAGGCACTTACAATT TTTTTACTGAAGTTGTTGCTAGAATTGTAGAATGTAAATGTGTATGATCTGGACTTCCAGGAACTGTCTTGTGATTCTAA ATGATTTTTTGTATTCCTATTACAGTATGGAGAAACTCCTTTGCACATGGCAGCAAAAAATGGATGTAGTGATACTGCAC GGTTACTTCTTGCTCATGGTGCTGTTGTTGAAGCAAGAGCAAATGTAATTTTTTTAAATGAGTTTTCATCTGTCATTTAA TCTTATTTAAAACCTGGCAATAATTATTTTTATAATTCATCTCATATGAAAGTTTGTTCCTACCTTTTCTTGCAGAATGG TATGACACCTTTACACCTTGCTGTGTGGTACTCGCTACGAGCAGAAGAAGATATCTCGGCAGTGAAAACATTGCTCGAAT ACAATGCTGATTGCAGTGCTAAGGATGATGTAATCAATTTTAAACCTTCTTTTTGTGCTCAAATGGCTGAAATCATAATA CTTACTCAAACCTATGAATTGCAGGAGGGGATGACTCCTTTAAATCATCTTTCCCAAGGCCCTGGAACTGAGAAGCTCAG GGAATTATTACACTGGCATCTTGATGAGCAGAGGAAGAAACGAGCCATTAAAGCCTGCAGTGAAACAAAATCTAAAATGG ATGAGCTCGAAAAGGAACTAACTAACATTGTGGGTCTTAATGATCTAAAAGTACAGCTACGCAAGTGGGCAAAGGGCATG CTTTTGGATGAGAGGCGCAGAGCTCTTGGTCTGCATGTTGGCACAAGAAGACCCCCTCACATGGCCTTTCTTGGAAATCC TGGAACAGGTTATTGGTGACAGATTGTTTTTGGAATATCATGCTCGTATTGTCTGTGATCAGTATTGGAAAATTTGCTTA TCCTGCTCTTAATTTTAGTTTTTCCCATTTACCATTCCATGCTATAAAAATTTATTTTTGTGTTCTTTTTGAACTCTCAT TTTCTATTGGGAGCCACTGGCTCAGCCTTCCCTTTGTATGTAGACTTTTGCATGACTACTCACTAATTGGTACAGAGGAA TGGTGTTTAGATCTGAAGTTAATTTATTCACGGATCATTGAGTTTTCATGGAGTCTATTTCCTTTGGCTCTTCACATTTA CTAATGCCATGATTTTTAGCTGCTCTTTGCCTTTCTGATCGGTTGGTTCCTCCACTAATGCAGCATCACAAGCTAAGCAT TTCACTTGGTTTAGATTGATGAAAATGAGCATTACTGCATGCCTGATGACACTGATATATCTTTGTTTATATAAAAAATT GAATGCAACAGCAGCTACATCAGTCTTGTGTGCTTTCTTTTTGTCATGTCAACTCCTATTTAGGTCTTTTGCTTAATGCA GCATTACAAGCTAAGCATTTCACTTGGTTTAGATTGATGAAAATGTGCATTATTGCATGCCTGATGACACTGATATATCT TTGTTTATATAAACAATTGAATGCAACAGCAGCTACATCAGTCTTGTGTGCTTTCTTTTTGTCATGTCAACTCCTATTTA GGTCTTTTGCTTATTTTTGGTGCCTTTTTCTTTATGGATCTGTACTTTCCGTAAGTTAACTTCTGTATTTAATAGGTAAA ACTATGGTAGCAAGGATCCTTGGAAGATTACTCCACATGGTGGGAATTCTACCTACTGATAACGTGACAGAAGTGCAGCG AACTGATTTAGTTGGTGAATTTGTTGGTCACACTGGTCCTAAAACCAGGCGAAAGGTATGTTATCAGCTTCGAAATTCTT CATCTCTTAAGTCTGTTTTGGCTTTTAGAAACCAGATTTGTCTGTGTTGTTTAACAATTGAGTTCAAACTTCAAACATTG TATACAGATCAAGGAAGCAGAGGGGGGGATTCTTTTCGTCGATGAAGCTTATAGACTGATACCGATGCAGAAGAGTGATG ATAAGGACTACGGGTTGGAAGCCTTAGAGGAGATTATGTCTATCATGGACAGTGGAAAAATTGTTGTAATATTTGCTGGG TACAGTGAACCAATGAAACGAGTAATTGCTTCTAATGAAGGTTTCTGTAGAAGGGTCACCAAGTTTTTCCAATTTAATGA TTTCAATTCAGAAGAACTTGCACAAATCCTTCACATCAAGATGAGTAACTTAGCAAAAGATAGTTTGCTCTATGGATTTA GGTTGCATCCCTCTTGCAACCTAAAAGCTATAGCAGAATTGATAGAAAGGGAAACAACAGAGAAGCAGCGTAAGGAGACA AATGGCGGTTTGATAGATACCATGTTGGTTAATGCCAGGGAAAATTTGGATTTGAGGCTTAGCTTTGAGTGCATAGATAC AGAAGAACTTCTTACCATCACACTGGAAGATTTAGAAGCAGGTCTTCACCTACTATCACATTAA
CDS sequence (LotjaGi2g1v0217200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAGGACTCAGGATCAAAGGTCAAGGCCTGCTAAGCCCGCCACCATTCATGCCTATGCTCTTTCTGGGGACCTTGT TGGACTCCAGAGGCTACTTCGGGATAACCCTTCTCTTCTCAATGAGAGAAACCCTGTTATGGCACAGACACCACTTCATG TTTCTGCCGGTCACAATAGGGCTGACATAGTTAAGTTTCTTCTTGATTGGCAAGGACCAGATAAGGTTGAGATGGAGGCC AAGAATATGTATGGAGAAACTCCTTTGCACATGGCAGCAAAAAATGGATGTAGTGATACTGCACGGTTACTTCTTGCTCA TGGTGCTGTTGTTGAAGCAAGAGCAAATAATGTTACTCAAACCTATGAATTGCAGGAGGGGATGACTCCTTTAAATCATC TTTCCCAAGGCCCTGGAACTGAGAAGCTCAGGGAATTATTACACTGGCATCTTGATGAGCAGAGGAAGAAACGAGCCATT AAAGCCTGCAGTGAAACAAAATCTAAAATGGATGAGCTCGAAAAGGAACTAACTAACATTGTGGGTCTTAATGATCTAAA AGTACAGCTACGCAAGTGGGCAAAGGGCATGCTTTTGGATGAGAGGCGCAGAGCTCTTGGTCTGCATGTTGGCACAAGAA GACCCCCTCACATGGCCTTTCTTGGAAATCCTGGAACAGGTAAAACTATGGTAGCAAGGATCCTTGGAAGATTACTCCAC ATGGTGGGAATTCTACCTACTGATAACGTGACAGAAGTGCAGCGAACTGATTTAGTTGGTGAATTTGTTGGTCACACTGG TCCTAAAACCAGGCGAAAGATCAAGGAAGCAGAGGGGGGGATTCTTTTCGTCGATGAAGCTTATAGACTGATACCGATGC AGAAGAGTGATGATAAGGACTACGGGTTGGAAGCCTTAGAGGAGATTATGTCTATCATGGACAGTGGAAAAATTGTTGTA ATATTTGCTGGGTACAGTGAACCAATGAAACGAGTAATTGCTTCTAATGAAGGTTTCTGTAGAAGGGTCACCAAGTTTTT CCAATTTAATGATTTCAATTCAGAAGAACTTGCACAAATCCTTCACATCAAGATGAGTAACTTAGCAAAAGATAGTTTGC TCTATGGATTTAGGTTGCATCCCTCTTGCAACCTAAAAGCTATAGCAGAATTGATAGAAAGGGAAACAACAGAGAAGCAG CGTAAGGAGACAAATGGCGGTTTGATAGATACCATGTTGGTTAATGCCAGGGAAAATTTGGATTTGAGGCTTAGCTTTGA GTGCATAGATACAGAAGAACTTCTTACCATCACACTGGAAGATTTAGAAGCAGGTCTTCACCTACTATCACATTAA
Protein sequence (LotjaGi2g1v0217200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRTQDQRSRPAKPATIHAYALSGDLVGLQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRADIVKFLLDWQGPDKVEMEA KNMYGETPLHMAAKNGCSDTARLLLAHGAVVEARANNVTQTYELQEGMTPLNHLSQGPGTEKLRELLHWHLDEQRKKRAI KACSETKSKMDELEKELTNIVGLNDLKVQLRKWAKGMLLDERRRALGLHVGTRRPPHMAFLGNPGTGKTMVARILGRLLH MVGILPTDNVTEVQRTDLVGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSIMDSGKIVV IFAGYSEPMKRVIASNEGFCRRVTKFFQFNDFNSEELAQILHIKMSNLAKDSLLYGFRLHPSCNLKAIAELIERETTEKQ RKETNGGLIDTMLVNARENLDLRLSFECIDTEELLTITLEDLEAGLHLLSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 143 | 143 | 4.6E-21 | ||
| PANTHER | 1 | 119 | 119 | 1.3E-248 | – | |
| PANTHER | 1 | 119 | 119 | 1.3E-248 | – | |
| ProSiteProfiles | 12 | 158 | 147 | 18.139 | ||
| SUPERFAMILY | 17 | 149 | 133 | 1.07E-17 | ||
| Pfam | 30 | 113 | 84 | 4.7E-12 | ||
| SMART | 47 | 78 | 32 | 190.0 | ||
| SMART | 84 | 113 | 30 | 3.9E-5 | ||
| ProSiteProfiles | 84 | 116 | 33 | 12.93 | ||
| PANTHER | 123 | 450 | 328 | 1.3E-248 | – | |
| PANTHER | 123 | 450 | 328 | 1.3E-248 | – | |
| Gene3D | 150 | 350 | 201 | 3.2E-45 | – | |
| Coils | 156 | 176 | 21 | - | – | |
| SUPERFAMILY | 174 | 440 | 267 | 4.41E-31 | ||
| PRINTS | 176 | 190 | 15 | 4.2E-36 | ||
| CDD | 200 | 323 | 124 | 1.93055E-10 | – | |
| SMART | 214 | 347 | 134 | 1.9E-5 | ||
| PRINTS | 217 | 232 | 16 | 4.2E-36 | ||
| Pfam | 218 | 333 | 116 | 8.2E-13 | ||
| PRINTS | 255 | 269 | 15 | 4.2E-36 | ||
| PRINTS | 269 | 288 | 20 | 4.2E-36 | ||
| PRINTS | 321 | 338 | 18 | 4.2E-36 | ||
| PRINTS | 338 | 357 | 20 | 4.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0217200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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