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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0415100 |
| Transcript ID | LotjaGi2g1v0415100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91297033..91303278) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGATCGATTCCAAGTCCTTGAGTAATAGTAGGTAGAAAGAAAAGTCGACATTAACATTCACTAAAGCACCCACAAGA GACGCACGTGCCATCCCACATGCATTGTTGAACGGTGCTGGTGTGCAAATTCCGCTGACTCGTAACGGAGAGTTGACAGC AAAATTTCATCATTTCCGCTTCATCTTCTCTTCTCTCCGTCGGTGACGCACATTCGATTGCTCCCCAAATTGTGCAGATC TGCGGCGGAGCTACCATTTATTCTGATCGATCTTCTTCTTCGTCCACACACTGGATCTGAGATGCCGGTGGCTGCTTCCG CTATATACTTCCTCAACCTCCGCGGAGATGTTCTCATCAATCGCCTCTATCGAGACGATGTCGGGTAACACATCTCTCTC CCCCTCTCTCTCTCTGAAGATCCTCAGTGATGAATTGAAATGAACCGCTGTTTGCACTCTCAATCACGACGTAACCTAAT TTGATTTTATTTCTAAATATTTGTGAGCTCGAATTCTGGAATTTAAGCATGTTTGAACCAAAGCCTGTGTTTCAACTTCG AACAATTTTTTGGCCGTATGCAGAATATTTCACTCGTAATGCAGCTAGGACTTGTGATTGCTGAGTTTTTGCTATTAGAA TGCTTCTTCATGAAACCCTAGAACCTTTTGATTGAGCTGTTAAAATTTCATTTATGTGTACTCTAATTCATGGTTTTACA GGGGAAATATGGTTGATGCTTTTCGGACGCATATAATGCAAACCAAAGAACTCGGTACCTGTCCTGTGAAGCAGATTGGT GGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATCGTCATTGTTGTCAGCAGCAATGCTAATGTAGCTTGCGC TTTCAAGTTTGTTGTTGAGGTATTCAACCTTTAACTGCCATTGCCATTATCTGATGTGTACTGCTTTAGTTCCATCCTTG CTCATATCGCTGAGAGGAAGGATCTGTTGTCTTGGTTACTTGTGCATGACTTTCTGGCTACCAATTTTGTATTTTTTATT ATAATTATCATTTACTTGGGATTGCATGAATGATTGTAGTTGATCATTTGTCCCTCTTTTTGATGCAGGCTGTTGCACTT TTCAAATCATATTTTGGCGGCTCTTTTGATGAGGATGCAATCCGCAATAATTTTGTACTCATTTATGAGCTTCTAGATGG TATGTAAATTTACATGGTGATAAATTAAATCCCTATTAGTTCAACTTTTATATTTTTCTCTAAGGAAGGAATACCACCAC TGGAAGTCAATGCTAAGGGCAATGTTTCCTATAACTTCAATACCTGGCATTAGTTAGAAATCCATCATTACTTAGCAGAA TATTTTCTAGCAGAGTTACTATTTCTGACCAAATTTCTTCAAGTGAAGAGTTAACTATGCGAAGTGGGTGCCTAGTGCCT AAACTGGAGAGGGAGATGCAAGAGCATTACAAAATATTTATATGATTTGAATTTGGTGGAAATATGAAATACAACACACA TGACGTAATTTATGAAACTGAGCTTTTAGTTAGGAAAACATAAAGAATCTTCTTGTAAACTAAGACAATTATTTATGGTG CAAAAGATCCAGGCTAATAAAGGTTAGCATACATTTTGTTTGTTGCTATTTTCATGCTTCTTGAAAACTATAAATTATGT GGTAATAATAGCTTGACCAAAATGATAGTTATATTTATATCTGCTCTTCAGAGTTTGATAGAAACTGCGATGGTTAAAAT AAGTGCCAACCTAGGGCTTTGATTGTGAACTGTTATGGAGATGGTTGGTATGTTGGGCTTGTATGTGTGAAACTGCAGCT GCGCTCTTGCTTGATAACGTTTAGTAATCATCGAATGGGTTTATGATAAATGTTTACGACAAATATTTGCAGAAATCATG GACTTTGGCTATCCTCAAAATCTTTCACCGGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTCCGTTCCCCATTTTC ATCAAAGGTTAGTGTGCACATGCTATTTGCAAATACCATGAAATAAGGACATAGACTTGATAGGATGCAATCATGGGTAT ACTGACTTGAAAAAACTAGAAAATGGAATTTTGGAGAATAAAATATATGTAATTGCATGAAGATGTTAAGATACTTAATA TCATTTTTTGTTTGTTTAGTCATATACATTTCACAATATGTTTTGTCTGTTGAATATTCCATAATATTTCAATTCATATT ATGATGTGTGCAATGATTGGGATACAGCCCGCAGATAGACCTGTTCCGAATGCGACTTTACAAGTTACTGGTGCTGTTGG TTGGCGGAGAGAAGGCCTTGCGTACAAAAAGAATGAGGTGAGTTTAATACTATCTTACATCCACTCTATATGATTATTGC CACATACTATTACAAGTTTACAACATTGACCTGTTGCAGGTCTTCCTAGATATCGTGGAAAGTGTAAATCTTCTTATGTC TTCAAAAGGTGGGTTGTGTATTTTGATTTTCTTCATGTTGATGTTTGCAAGATTGCCTGCTAATTGTTCCATGGTTTTAG GTGTCGTTCTGCGTTGTGATGTGACGGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGT TTGAATGATAAGATTGGTCTTGAGAAAGAGTCACAGATTAAATCCCGTCCTACAAAAAGGTAATTTGGACATGTTTTCCC TCCAATCGTACTTTCCTTTGACATAGTTGTTTGAAAGTATGTTTATGTTTCTCCTATCGTAGAAAATACTGGTGCTGTTC CTCCTGTATTTTTTCCTCTACTATTCTAGGAATAACGTTTCTATCATCAACATAATCTATTTTGCAGTGGTAAAACTATT GAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACGAGGTTCAACTCAGAGAAAACTGTTAGTTTTGTGCCACC TGATGGTGAATTTGAACTAATGAAGTGAGTTCTTGCTCTTGTATTCTATCTTGTTTTATCTAATTTCATGAATCTATACC AAGTATATCACATATTCACATGCATGCTTTGTCTGGAAAAGGGGCAGGTGGGTAGAAGGGTTTGTAATTACTCATGTTGC CCTTTGAACTAATTTTGAGTAACTTCCATAATCACTCTTTGTTGATTTTTCTACTTGGCAGTTGGCACTTGATAATCTAT TTCTTAGTAGATCTCCATCATCAAGCTTTGATTTGGAAAATGGGCATCTCTATGCTATGATTTAGGTCTTCTATAAAAGG GTTTTTTTCCCAGTTCCTTCTAAGAAACTCCAATAGGCCACCAAAAACAACATTGAACTCTAACTGAATTTGATAATATT GCTTACAAGTTCTAAGTGTCCATTTCTTCACTTTCTTTTCCACTTTTCCCTACCTAGCGTCCTAGCCTAAGAATTTAACT TATATGCTGTTACAGGTATTGTCATCAAAGTCTATTTTTTGTTCTTGCAGTTTGCAGTTTCCTTGAATACTAGTTTCATT TATTTAGATGGATGATTGTGCTCTCCATTGAACAAGGAAAGTTATAGGCTAAACCATTAAGAGAGATTTGGATTTAAATG ATCTTTCATTAGACATGATTCATATAAGGGTATTATGGAGTTTTTTGATCCATGGACCAACTCCACCTGGTGGGAAAATG CTATGGTTGTTATTATTTTTGTGATGCTCTCTTTGTTATTAGATTAGTTTCTTCATTTTATGATGTTTGTGGCATGCAAA TGATAGTCTCCTCCTACAGTGTTAGCATGACTTCAAATCTTATTTTGTCGTTTCAACTTTCAAGAAGTCTATTTTACCAT TTTGTATCACTTGGTTTTTAAAAAATTACAATAGCATCAGGTCAATTCTTAATGGTGCCATGGTTTGTCTGATGCCTGCT AAATTTATTTTATAATTATATTGGTAGGTATCGTATCACTGAAGGTGTTAATCTTCCCTTCAAAGTTTTGCCTACCATCA AGGAACTAGGCCGAACACGGATGGAAGTAAATGTTAAGGTTTGAAATTTTTCACGTTGAAGGTCATATAATTTATCTATC ATCCATTTGTTTTTTTATTTATTTTTAACATGTTTTTCAGGTAAAGAGTGTCTTTGGTGCAAAGATGTTTGCACTAGGGG TTGTTGTCAAAATTCCTGTGCCAAAACAAACAGCAAAAACGAATTTCACAGTCACATCTGGCCGTGCGAAATATAATGCA TCTATTGATTGTTTGGTTTGGAAGTAAGTATCTCACAATATTATGATTACTATGTGAAATAAAGGTTATGGAAAATGGGT TTCAGGTACACACTCAAAAAGGATCTTGACTCTTGAGCAAAATATTAAGTGTTTTCTGTCACACTCACGAAAGAATTGGC TCTAGTTAAACATTAAGATGTATGCTTTTACTTGGTAATTTTATATTTTGATACATGTACATCATATGTCATTTATGCGT TATTATTTTTCACTTTTAGCCTAAGAGACTTCTCTTTCGGTTATCTTCAAATGGTATTTTTATGAATGAATTGTTACTCT CCCTTTCCAGCCTTCCCCGGTTTTTCTATTGGTACTCTTGCGTTTTTCCCTTGAGTACCTTACTAATATCCAATTTCATT TTTAATTTGCAGGATAAGAAAATTTCCTGGGCAAACTGAGCCTACCTTGAGTGCAGAAGTTGAGCTTATTTCCACGATGA CAGAAAAGAAATCTTGGACTAGGCCACCAATTCAGATGGAGTTTCAGGTTTGTTATCAGTTACTTTAACTAGATCCACAG TTACTTTAACTAGATCCATGAAAATTGGCTGGAACTTTCTGATCCCTGTTAAAGTATTTGTGAAAGCTTATTCATAAAAA TTTAGGATATGTAATTGATCTAGCTTAGTTTAATGTCCAACTTTGATGTATATACGTTAAATAGGGAGATTTGGAGATAG GACATGTGTATTCATTATTAGTTTGATATATGCAGTTGTCTCTAGTGTACATTGTAGCATATGTGCTTCTTTTCTCTCTC AAAACAAAACAAAAACTTCTTAGCTCCCTATTTTCTTTTGGTAATCTCTGTGGATGTTGTCGCTCTGCTGTGAGCCAAAC TTTTGAAGTATATATCACATTCACCTATCATGTCTTCACAAATTTCCTTTCATTTACTTACATAGTAGCTTGATCTACTT GTGTGATATTTGTTAATGCAGGTTCCCATGTTCACGGCATCTGGTTTACGTGTTCGTTTCCTGAAGGTATCACGCTCTTA CTTTTTTTCCTTTTCTGCATCTGTTTAAAACTCGTTTTTATATAATTTACTCTTTTGAAGGTCTGGGAGAAGAGCGGATA CAACACCGTGGAGTGGGTTCGTTATATTACAAAAGCAGGATCATATGAGATTAGGTGCTAGACACACATTGGTATTGCTG GTTTCAAGTGACAGAGATTCATTGATGGAGATTGAAGCGACCCTAAATAATTAAAGGCGCAGTTCCATCTAGTTATCCAG GTTCTGCAGAGTTTCTTATTATGGTTGAGGCGTCTTTCCTCTCATAGTGTGTTGTCAAAACGATTGTGCTTGTGAAATAT CAGTTCAATATTTTTTTGTTTCCATAGCCAGTTTGTTAATGGAAACTTAAATTCATTTTCTGTCTCCCTTGTACTGTACA CTTGTATTTTGTTTTAATGATTATGTTTATTGAGTTATGCATTCTGTAATTTACTTGTCACACTAATTTGCTCGTCCTTC AAAATATAAATGTGAGAGATTGCTGTGTTTATACTTATAATTTATATGGTCGCTCATTAAATTAAACTGGTGTATTTGGT GTATCTTTGAAGGGGTGAGGGATTGTTTCGTTGATCAGAGAGAAGTCCTGTTATGTGCCGCACTAAAAAATGGAGTAGAT TAATTGAAAATTTTACATCAAAAAAAAAAAATATAGGGAACTAAAAATGCTGAATATTCTCTTTCGGGTTCCTTATTTTG ATAGTTCCTTATGTGAATGGATACTGAATATTCCCTTTTGGATTCGTTATTTGATGGTTATAATATTTATAGTCGACTAA TGCATCCAAATCTTAGAGCTTTCTCCTCCTTGAGAATTTGTACTTACCGATTATAATTTCTTTTGAAAATTATGAAATTA GTGTGAATTTGAAAATACAATCAAATTAGGATAAGTGATAGATATTTAAGTAAAGCTTAAGAAATTTTAATTTATTTTGC TTTTTA
CDS sequence (LotjaGi2g1v0415100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGTGGCTGCTTCCGCTATATACTTCCTCAACCTCCGCGGAGATGTTCTCATCAATCGCCTCTATCGAGACGATGT CGGGGGAAATATGGTTGATGCTTTTCGGACGCATATAATGCAAACCAAAGAACTCGGTACCTGTCCTGTGAAGCAGATTG GTGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATCGTCATTGTTGTCAGCAGCAATGCTAATGTAGCTTGC GCTTTCAAGTTTGTTGTTGAGGCTGTTGCACTTTTCAAATCATATTTTGGCGGCTCTTTTGATGAGGATGCAATCCGCAA TAATTTTGTACTCATTTATGAGCTTCTAGATGAAATCATGGACTTTGGCTATCCTCAAAATCTTTCACCGGAGATCTTAA AGCTTTATATCACTCAGGAAGGAGTCCGTTCCCCATTTTCATCAAAGCCCGCAGATAGACCTGTTCCGAATGCGACTTTA CAAGTTACTGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGCGTACAAAAAGAATGAGGTCTTCCTAGATATCGTGGAAAG TGTAAATCTTCTTATGTCTTCAAAAGGTGTCGTTCTGCGTTGTGATGTGACGGGGAAGATTCTTATGAAGTGCTTTCTTT CTGGAATGCCTGATTTGAAGTTGGGTTTGAATGATAAGATTGGTCTTGAGAAAGAGTCACAGATTAAATCCCGTCCTACA AAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACGAGGTTCAACTCAGAGAAAAC TGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAGTATCGTATCACTGAAGGTGTTAATCTTCCCTTCAAAG TTTTGCCTACCATCAAGGAACTAGGCCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCAAAGATG TTTGCACTAGGGGTTGTTGTCAAAATTCCTGTGCCAAAACAAACAGCAAAAACGAATTTCACAGTCACATCTGGCCGTGC GAAATATAATGCATCTATTGATTGTTTGGTTTGGAAGATAAGAAAATTTCCTGGGCAAACTGAGCCTACCTTGAGTGCAG AAGTTGAGCTTATTTCCACGATGACAGAAAAGAAATCTTGGACTAGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATG TTCACGGCATCTGGTTTACGTGTTCGTTTCCTGAAGGTCTGGGAGAAGAGCGGATACAACACCGTGGAGTGGGTTCGTTA TATTACAAAAGCAGGATCATATGAGATTAGGTGCTAG
Protein sequence (LotjaGi2g1v0415100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVKQIGGCSFFYMRISNVYIVIVVSSNANVAC AFKFVVEAVALFKSYFGGSFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPADRPVPNATL QVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQIKSRPT KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKM FALGVVVKIPVPKQTAKTNFTVTSGRAKYNASIDCLVWKIRKFPGQTEPTLSAEVELISTMTEKKSWTRPPIQMEFQVPM FTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 438 | 435 | 4.3E-132 | ||
| PANTHER | 4 | 438 | 435 | 4.6E-291 | – | |
| PANTHER | 4 | 438 | 435 | 4.6E-291 | – | |
| Gene3D | 5 | 145 | 141 | 1.2E-45 | – | |
| CDD | 6 | 144 | 139 | 8.14956E-74 | – | |
| SUPERFAMILY | 6 | 142 | 137 | 1.37E-34 | ||
| PRINTS | 15 | 35 | 21 | 9.1E-63 | ||
| PRINTS | 102 | 129 | 28 | 9.1E-63 | ||
| SUPERFAMILY | 166 | 437 | 272 | 2.75E-96 | ||
| ProSitePatterns | 166 | 186 | 21 | - | ||
| Pfam | 167 | 438 | 272 | 1.6E-87 | ||
| PRINTS | 168 | 196 | 29 | 9.1E-63 | ||
| Gene3D | 174 | 433 | 260 | 8.0E-101 | – | |
| CDD | 175 | 437 | 263 | 0.0 | ||
| ProSiteProfiles | 177 | 437 | 261 | 46.201 | ||
| PRINTS | 248 | 275 | 28 | 9.1E-63 | ||
| Gene3D | 290 | 437 | 148 | 8.0E-101 | – | |
| PRINTS | 317 | 332 | 16 | 9.1E-63 | ||
| PRINTS | 357 | 368 | 12 | 9.1E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi2g1v0415100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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