Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0028100.4

Overview

Field Value
Gene ID LotjaGi3g1v0028100
Transcript ID LotjaGi3g1v0028100.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT1G54270.2 eif4a-2; Swiss-Prot: sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr|I3SKR0|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:3068338..3069917) extracted from Lotus japonicus Gifu genome v1.2.

ACTTTTGATTCAATGGGATTGCATGAAAATCTCCTGAGAGGCATATATGCTTATGGTATGGCAATTTTTTTTTTCGTTTT GTTTCTTTTAGTGCGTACTTGATACTTATCACAGAATCTTTTTATTTCTAGAAGTTCAAAAGTGAATTTAGTGAAAACAG TCAATTATTCTTTTGTATTATGAAAGTGGACATCTATGCTGGGGAGTACAACTATTGCATTTTTAGAGTAATAAGTTAAA TTTTATCAGTGCTTAACTCTAACACTAGATCATTGGTGATGTTTATCCTTGTTCTAAAGGTTTTGAGAGACCTTCTGCAA TACAGCAGAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCA ACATTCTGTTCTGGAATTCTACAACAGCTTAATTATGAATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGA GCTAGCACAGCAGATTGAGAAGGTCATGCGAGCTCTCGGTGATTATCTCGGTGTGAAGGTTCATGCTTGTGTTGGTGGGA CAAGTGTTCGTGAGGATCAGCGCATCCTCCAAGCTGGAGTCCACACTGTTGTTGGTACTCCTGGGCGTGTGTTTGACATG CTGAGGAGACAGTCTCTTCGCCCAGATAGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTT CAAGGATCAGGTTTGCTGCTTCTGTTTTTAAAATCTGATTTGGATGGGAACTTTTTCATGGCCATCATCATATACATGTT CTTTCATGCATGAAGTTGTCACTTCCCCCCCCCCCCCTTTCTGTTTGTTTCACACGCTTCCACAAGCTCCAGATGAAAGT CATTTTGTGTTGTATAGACTTATGGATAGCTAACTGTTTATGTTCTTTCATCTGTTATCTGCAGATTTACGACATCTTCC AGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTGGAGATTACAAGGAAGTTC ATGAATAAGCCAGTGAGAATCCTGGTCAAGCGTGATGAATTGACTCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGA GAAGGAAGAGTGGAAACTCGAGACATTATGCGACCTGTATGAGACTCTTGCTATCACTCAGAGCGTCATTTTTGTGAACA CAAGGCGAAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTGTCTGCCACCCACGGAGACATGGAC CAGAACACTCGTGATATCATCATGCGTGAGTTTCGCTCTGGCTCTTCTCGAGTCCTGATTACCACTGACCTCTTGGCTCG TGGTATTGATGTGCAGCAAGTTTCTCTGGTCATTAACTATGATCTGCCGACTCAACCTGAAAATTATCTTCATCGTATTG GGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTGGATGATTCAAGAATGCTGTCTGATATT CAGAAGTTCTACAATGTGACCGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0028100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATTGCATGAAAATCTCCTGAGAGGTTTTGAGAGACCTTCTGCAATACAGCAGAGGGGAATTGTTCCTTTCTGCAA AGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACATTCTGTTCTGGAATTCTACAACAGCTTA ATTATGAATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAGGTCATGCGA GCTCTCGGTGATTATCTCGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATCCTCCA AGCTGGAGTCCACACTGTTGTTGGTACTCCTGGGCGTGTGTTTGACATGCTGAGGAGACAGTCTCTTCGCCCAGATAGCA TAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTCAAGGATCAGATTTACGACATCTTCCAGCTA CTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTGGAGATTACAAGGAAGTTCATGAA TAAGCCAGTGAGAATCCTGGTCAAGCGTGATGAATTGACTCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGAGAAGG AAGAGTGGAAACTCGAGACATTATGCGACCTGTATGAGACTCTTGCTATCACTCAGAGCGTCATTTTTGTGAACACAAGG CGAAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTGTCTGCCACCCACGGAGACATGGACCAGAA CACTCGTGATATCATCATGCGTGAGTTTCGCTCTGGCTCTTCTCGAGTCCTGATTACCACTGACCTCTTGGCTCGTGGTA TTGATGTGCAGCAAGTTTCTCTGGTCATTAACTATGATCTGCCGACTCAACCTGAAAATTATCTTCATCGTATTGGGCGA AGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTGGATGATTCAAGAATGCTGTCTGATATTCAGAA GTTCTACAATGTGACCGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0028100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLHENLLRGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLNYELVQCQALVLAPTRELAQQIEKVMR ALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQL LPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR RKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR SGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd17939
1 193 193 2.35158E-127 –
Gene3D
G3DSA:3.40.50.300
1 196 196 6.2E-62 –
PANTHER
PTHR24031:SF641
2 358 357 2.2E-210 –
PANTHER
PTHR24031
2 358 357 2.2E-210 –
SMART
SM00487
10 207 198 4.0E-54
IPR014001
Pfam
PF00270
16 177 162 4.8E-40
IPR011545
ProSiteProfiles
PS51192
22 192 171 28.699
IPR014001
SUPERFAMILY
SSF52540
60 345 286 1.89E-73
IPR027417
ProSitePatterns
PS00039
138 146 9 -
IPR000629
Gene3D
G3DSA:3.40.50.300
197 364 168 1.8E-58 –
ProSiteProfiles
PS51194
203 364 162 26.06
IPR001650
CDD
cd18787
204 334 131 2.78174E-61 –
Pfam
PF00271
217 325 109 4.1E-29
IPR001650
SMART
SM00490
244 325 82 2.1E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0028100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…