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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0028100 |
| Transcript ID | LotjaGi3g1v0028100.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr|I3SKR0|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3068338..3070259) extracted from Lotus japonicus Gifu genome v1.2.
TGCGTTGAATCGTGTTTTCGCTGTAGAAATTTAATGTAAAATTCGTTTTAAAAGTGGTTTTTTGTTAAAAAGCTGTTGCA TACCGGGTCACAATTTTACTTAAGTTTTTTTGTGTGATACAGCATGGCAGGTTTAGCTCCAGAAGGCTCACAGTTTGATG CGAAGCAATATGATTCCAAGATGACTGAATTGTAAGCTAATTGTGCTTTATATATTTCAGTGTGTGTAATGCTTCGATTC CTTATTGATGTAGCTTTATGTAATTTTATTATCTTGAAAAATAATTACAGGCTTGCTACTGATGGACAAGAATTCTTCAC CTCATATGATGAAGTCTATGATACTTTTGATTCAATGGGATTGCATGAAAATCTCCTGAGAGGCATATATGCTTATGGTA TGGCAATTTTTTTTTTCGTTTTGTTTCTTTTAGTGCGTACTTGATACTTATCACAGAATCTTTTTATTTCTAGAAGTTCA AAAGTGAATTTAGTGAAAACAGTCAATTATTCTTTTGTATTATGAAAGTGGACATCTATGCTGGGGAGTACAACTATTGC ATTTTTAGAGTAATAAGTTAAATTTTATCAGTGCTTAACTCTAACACTAGATCATTGGTGATGTTTATCCTTGTTCTAAA GGTTTTGAGAGACCTTCTGCAATACAGCAGAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCA GTCTGGAACTGGAAAGACAGCAACATTCTGTTCTGGAATTCTACAACAGCTTAATTATGAATTGGTTCAGTGCCAGGCTT TGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAGGTCATGCGAGCTCTCGGTGATTATCTCGGTGTGAAG GTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATCCTCCAAGCTGGAGTCCACACTGTTGTTGGTAC TCCTGGGCGTGTGTTTGACATGCTGAGGAGACAGTCTCTTCGCCCAGATAGCATAAAGATGTTTGTTTTGGATGAGGCTG ATGAAATGCTTTCCCGTGGTTTCAAGGATCAGGTTTGCTGCTTCTGTTTTTAAAATCTGATTTGGATGGGAACTTTTTCA TGGCCATCATCATATACATGTTCTTTCATGCATGAAGTTGTCACTTCCCCCCCCCCCCCTTTCTGTTTGTTTCACACGCT TCCACAAGCTCCAGATGAAAGTCATTTTGTGTTGTATAGACTTATGGATAGCTAACTGTTTATGTTCTTTCATCTGTTAT CTGCAGATTTACGACATCTTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGC CCTGGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTCAAGCGTGATGAATTGACTCTTGAAGGTATCA AGCAGTTTTATGTGAATGTTGAGAAGGAAGAGTGGAAACTCGAGACATTATGCGACCTGTATGAGACTCTTGCTATCACT CAGAGCGTCATTTTTGTGAACACAAGGCGAAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTGTC TGCCACCCACGGAGACATGGACCAGAACACTCGTGATATCATCATGCGTGAGTTTCGCTCTGGCTCTTCTCGAGTCCTGA TTACCACTGACCTCTTGGCTCGTGGTATTGATGTGCAGCAAGTTTCTCTGGTCATTAACTATGATCTGCCGACTCAACCT GAAAATTATCTTCATCGTATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTGGATGA TTCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACCGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCT GA
CDS sequence (LotjaGi3g1v0028100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTGCATGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAGACCTTCTGCAATACAGCAGAGGGGAAT TGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACATTCTGTTCTGGAA TTCTACAACAGCTTAATTATGAATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATT GAGAAGGTCATGCGAGCTCTCGGTGATTATCTCGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGA TCAGCGCATCCTCCAAGCTGGAGTCCACACTGTTGTTGGTACTCCTGGGCGTGTGTTTGACATGCTGAGGAGACAGTCTC TTCGCCCAGATAGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTCAAGGATCAGATTTAC GACATCTTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTGGAGATTAC AAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTCAAGCGTGATGAATTGACTCTTGAAGGTATCAAGCAGTTTTATG TGAATGTTGAGAAGGAAGAGTGGAAACTCGAGACATTATGCGACCTGTATGAGACTCTTGCTATCACTCAGAGCGTCATT TTTGTGAACACAAGGCGAAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTGTCTGCCACCCACGG AGACATGGACCAGAACACTCGTGATATCATCATGCGTGAGTTTCGCTCTGGCTCTTCTCGAGTCCTGATTACCACTGACC TCTTGGCTCGTGGTATTGATGTGCAGCAAGTTTCTCTGGTCATTAACTATGATCTGCCGACTCAACCTGAAAATTATCTT CATCGTATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTGGATGATTCAAGAATGCT GTCTGATATTCAGAAGTTCTACAATGTGACCGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCTGA
Protein sequence (LotjaGi3g1v0028100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLHENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLNYELVQCQALVLAPTRELAQQI EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIY DIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI FVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL HRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 198 | 198 | 1.42949E-134 | – | |
| PANTHER | 1 | 363 | 363 | 2.4E-218 | – | |
| PANTHER | 1 | 363 | 363 | 2.4E-218 | – | |
| Gene3D | 1 | 201 | 201 | 5.2E-65 | – | |
| ProSiteProfiles | 1 | 24 | 24 | 9.506 | ||
| SMART | 15 | 212 | 198 | 4.0E-54 | ||
| Pfam | 21 | 182 | 162 | 5.0E-40 | ||
| ProSiteProfiles | 27 | 197 | 171 | 28.699 | ||
| SUPERFAMILY | 65 | 350 | 286 | 1.91E-73 | ||
| ProSitePatterns | 143 | 151 | 9 | - | ||
| Gene3D | 202 | 369 | 168 | 1.8E-58 | – | |
| ProSiteProfiles | 208 | 369 | 162 | 26.06 | ||
| CDD | 209 | 339 | 131 | 2.8799E-61 | – | |
| Pfam | 222 | 330 | 109 | 4.2E-29 | ||
| SMART | 249 | 330 | 82 | 2.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0028100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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