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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055100 |
| Transcript ID | LotjaGi3g1v0055100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|G7JKR1|G7JKR1_MEDTR Eukaryotic translation initiation factor SUI1-like protein; Found in the gene: LotjaGi3g1v0055100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5739980..5745187) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCAAGAAGGCGGTGGAAGCAAAGTCTCAGCAGAGGCTCTCCGGCGCCGACAGGAAGAAGCTGAAACGAAGCATCAA GGACAAATTCCCAAGAGCTTCTGATTCCGACTTAGACGCCTTGCTTCCTCCCAAGGTATTATTATTATATTATTCTTTGT ACTGAATGAATAATAGTGTTTTGTTTTGGAACATTAACCTTAACATTCACCAAAAAATACTAGGCTGAGGTAACAGTTGC CAAGTTCCAGAATCGAGTGCTTGTTTATGTTGTGGAGGGAGGCTTTCCTGTGTTTTTTGATGTTGATGGCCGCGGCTCTG ATATTTTCCCAACAGGTAGGTAACTTTCTCTGCCTTCACCAAACATTAATTAGCTCATCATATCAGTAGATTATTATAGT TACCTATTTGTGTCAATTGTGTTTTATAGCATGTTTGAATTAGCTTCTCTTTTCTCAGAATCAATTCTGGCATCATGAAG CTACTCACAGAGGCTTCTTCCCGTATTTGATTTTGGCATTGTAATCAATTGTACAAGAATTTCAAAACATGCACTTTGAA TTTATCGTATCCCATGTATCCGAGTCCCATTTTGTATATGTGTTTTAACTTTTAAGGTATGAATGGGATTTGTTTACTTA GAATATACTAGTTAACAAGGCCAACATTGCAGTGTTTGCTCTCTGGATGGTTCCTGAGCTACTGCCTGCTTTCATGCTCA AGGGCGGTGAGGTTTCTCGATATGTCATAGGTGGAGCAGACTTGATGTTCCCTGGCATAAGTGTGCCTCCTGAAGGTCTT CCATCATTTGCAGCAGGGGAAACATGGGCGGTTAAAGTACCCGGAAATCCTGCTCCCATTGCGGTAATTTCTTACATTGC TTGTTTCCTTTCATCCATGCTTGTATGCTGGCTGTCCTTGTTGAAATTTCATTCATTCTTATCAAGGTTGGGAGTACCAC AATGAGCAGTGCTGAAGCACTAAAAGCTGGATTGCGCGGAAAGGCGTTAAGAATAACTCATTATTATCGTGATTTTCTTT GGCAAGTATCGCTAGAGCTTGATCATTTGATTAATAACTATTAACAAATATTGCAGAACATTAAATTATTTTTCTCGGCT TGGTTGGATTTGCAGGGAGTCGGTTGAGGGCCGTTACGTACCTAATGCAGGTTTTCTTGAAGATGTTGTGTACGAGGATC CTTCTTTATTTCCACCTGCTCATGATTCTGCTCCAAATGAGGTTTCTTGTGAGACATCAATTGACCATCAGAACAACACA AAAGGCGGCGAAGCAGAGGAATCTCTGGATGTAAATGAGTTACAAACTGACTCTGGCCCTGCATTGACAACACCGAAAGA TGGTGAAAATGATACAGCAAATGAAATAACTACCGGTGTGGCTGATTTGGAGTTACCAGATACTGGCTCTGCTAATGACA CAACTGACCAACTATCAGCTTCAGATGTAGATTCTCTGTTAGATAAATGCCTTTTACAGGCATTGCATACAACAGTGAAG GACAAGGACCTTCCCTTGCCTGGAAGCACTCTATGGTGGGATTAAATCTCTCTCTCTCTGTCTCTCTGTCTAGGCTTTTG GTTTAGGGTTTGCTAAGCTGTACTATTTATTTAATACATCCCACTTTTGAATTCTTAACAAGCGTGCGTTTGTCTGTAAT AAATAAGGTTTCATAAAAAAAATTATTTTCTTTTAAGGATTTAGTAAGAAAATAGCAGCTGCTGAGTCCATTCTAATGAA TAAGCATGAATTCATTTAGCACGAATTCATTTCAGTTTGCTGTATTGTACATTCACTGTTATGTATAGCTGATTAAACAT TGGATTTACCCCATGTAATCTAATGAATGTTTGTTTCTGGCATTGTAGGTCAAACCATGTATTGCCATGTAGGCCTTCAG GAATGACTCTTGACATCAAGAAATCATCCTACAAGAAGTTATCCAAGTGGTTACAAGCAAAGGCCTCCTCTGGTTTGGTG TGTCATCTACTGCATACCATTTAGAATAGTAAATAGAATCTTGCTTATATTGACTGAATTTTTTTTATCATAATGTGAGT TTAAAATCAAAATCTAGAATGTGCCAAAGTAGATTGCCAATTTATGATCCATGTGAATTGGAGCTTTCTTGATCTGCCAG CTCCTCTGTTTTGCAATATTTTTCTTCCTTCTACTTAAACTATTTATACTTATTTCTAAATTGCTGTGTTATGTTTCTCA TAATCTCTGAACTTTGTTTGATTTGCTACTTTTCTTCTTTTATGCTTAACCGCTGATGTTTTCTTCTGTTAGGATGCACT TTACTGTAGCATTCGGACACTTTGTAGCCTCCTTAGCTTGTTAGATATGTAAGCCAAGCCCCTAGGGTGCAAGACAGAAC TTTGATAAAAAAATTCTGTTGTAGTGTTATTCATGAAAAATAGTGATGGAGATTTCATAGGAGCTTGGATTACAGTAGTT CCATTAATTCGAAGTATAAAGTATCAATTAGAAGTTTTTATAATAAAGCAAAATATCTGAATTGGTGACAATGATGAAAG ATTGAACTGGAAACTGCGGGTCTAATATGTACTTGTGTGAATTAAAACTAGTAACCTACGCCAAATGACTTTTGTGAAGC TTTTTGTAATGCTAATACTTATTGATGAGACTCTATCATGGTAGCTGAAATCAACTAAAGGAATTATTCTCAATTGGGTT TTTTCTTATGATGTTACCTTGTTACTTGTTAGTAAATTAAGGGTTGATGAGATATTGAAAATTTGAAACTACTAATGGGT TTGTAAAGTTTACCCATGTAATCGTGTGAAAAACTGAAAATAATTTGCCCCATGAAGTAAACAAAGGATTAAAATTGCAT GTTCGTTTCCTGAGTAAGTTGTGAACAAAATTTATTGACATTTGTTCCCTTCTGATCATGTCTTCTTCTGTTAAAGCTTT TTATATTTATCTATTTGCGATGCCATTTCTCGATTCTTTCTTCATTTAGATTCACATTTTGTACAGGTATCAGTTAAAGA AGATAAATACAAAAAAGAGTTCATGCTATTGTCAGTAAACAGAAACCATGCTGATTACAAATCCTTTAAGCCTGAAAAAA GGCCAGTGGAGAAAAGTGACCAGTCCAGTGCTCACTCTGCCAATGAAACTAGTTCATCCAAAACGCTTGAGGTAGCTGAA ATCTACAAGCCAAGTGTACATGTCAATTCCATATTTTCATCTGTGGGAGCTGACATAGGGAAACTTTATACTGCTTCTGA AGCTTCTGACATTGTCTTCAAATACGTTGAAAAAGAAAATCTTGTGAAACCAACAGATAAATCCATTGTGGTTCTAGACG CAATATTATGTGATGCACTGTTCAAGGGGGCTATTAAAAAAGGAACAGCTTATCCTTCACAAATTCACAAGAAAGATATA GGTTCTACATTTGTGAGCCGTATGCAACCTCACCATGTTGTGACAAGAGGGAATGAATCTGTAGTCCGTAAAGGTGCAGT TAAAACAATTCAGATATTGACAGAACGGCGGCAAGGCAACAAGAAGGTCACCAAACTCTCTGGTATGGAAACCTATCTTA TAGATGCTGAAGCATTATCATCAGAACTGCAGAAGAAGTTTGCTTGCAGTACCACTATTGCAGAACTGCCAGGTATTTCT AGTTTTCAACAAATTGAAACTTTTGTATTGGCTTGCACTTGTTTTTCGCCTGAAATAGTGTCTTCATTCTTCCTAATTCC TGCTGGATGAAGCTTTAACTTGTTTAAATCCAGTCGCATGTTGTGTTGTCTGATTTTATGCGCAATTATATTTTTGGGAT TATTTTTCTATGGTTGATAGAACACTGTTGCCCAACACCATGAAATTACATTTTGTTCCCGAAGCTGGAACGAGAAAATA TATCAAATTTAAGTGAGTCTTTATTTTTCCTATTTCCTGCTGGATGAAGCTTTAACTTGTTTAAATCCAGTCGCATATTG TGTTGTCTGATTTTATGCGCAATTATATTTTTGGTATTATTTTTCTATGGTTGATAGAACACTGTTGCCCAAGACCATGA AATTACATTTTGTTCCCGAAGCTGGAACGAGAAAATATATCAAATTTAAGTAGTCAAGTCCCCAGCTGATTTATCTTTTT TTTCTCCTTTCTGTTGGTCTTGCCTTCTGACAAGTCAGACAATCTTTCTTACCATAAATCCAAATTAAGACAGCTAATCT AATTTTATAATTGTGGGATTTTGACAGTAACAACTAACATGTATAAGCTACTCTGCTAATCGCTAATGACAAGGAAATAA AGACCAGCAAAAGGGGCTGGTTGTGGCTGGCAGTTGTATGGTATTTGCTTTCAAAGTTGTATATGGGAAACTAAACTGAT TTAGGGTGCATTTGGGTAAATAGCTTAATTAAGCCCTTAAGCCTATGACTATAAGCGCTTATTCTTAAGCTAATTTGAGA AACTTATTGAAAAAAGCTGAAAGTAGGTTATAGGTAAGCTTAAGAACTTATTCATAAGCTATCTTGAACAGCTTATGAAA ATAAGCTCAAAAAAGTTTATAGGTGGCCATAATCTATTTATGTAAGTTCTCCTAAATACCTGCATAAACGCTTATGCTTT AAGATAAGCTCAAAGAAGTTATTCCAAACGGGCCTGAATAGAGAACTTTTTAGTGAGCTGAAGCTGCAAGTGTTTCAACT ATGTTGGCCTTGTACATAGAGAGGAAACTGCAGGGATCATTTTGAAAATGCATTATCTTCCTTCAGACTGTAACTGAACA AAATCAGGGGTTCTGCATGTTAAACCTAATGTACGTTTATATAACCATCAATGTCTTTTGCATCCTTCTTTGCGTGAAAC TAATCGAAGTGAGTAGGGATGAATTCACAAGATTGTTTATTTCATGGAATACTTTGCTTGACTGGGAAGGTGGTCAGACA CCACACTCTTCTGAAATTTAGGGTTGTGACTTTGAAGTTTAATTTTCTAGTTGCATGATTTCATCTAATAAAATGATATA CATTTATTATATTGTCTATCTGAAATGTGTTAATATTTGTTTGCAGGTAAGAAAGGGCATGAGGTTCTGGTTCAAGGAGG AGTTATTGATGACCTAGCAAGGCATTTGATTGAACACTACGGAGTTCCAAAGAGATTTATTGAAGTTTATGATAAAACCA AGAGATGA
CDS sequence (LotjaGi3g1v0055100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAGAAGGCGGTGGAAGCAAAGTCTCAGCAGAGGCTCTCCGGCGCCGACAGGAAGAAGCTGAAACGAAGCATCAA GGACAAATTCCCAAGAGCTTCTGATTCCGACTTAGACGCCTTGCTTCCTCCCAAGGCTGAGGTAACAGTTGCCAAGTTCC AGAATCGAGTGCTTGTTTATGTTGTGGAGGGAGGCTTTCCTGTGTTTTTTGATGTTGATGGCCGCGGCTCTGATATTTTC CCAACAGTGTTTGCTCTCTGGATGGTTCCTGAGCTACTGCCTGCTTTCATGCTCAAGGGCGGTGAGGTTTCTCGATATGT CATAGGTGGAGCAGACTTGATGTTCCCTGGCATAAGTGTGCCTCCTGAAGGTCTTCCATCATTTGCAGCAGGGGAAACAT GGGCGGTTAAAGTACCCGGAAATCCTGCTCCCATTGCGGTTGGGAGTACCACAATGAGCAGTGCTGAAGCACTAAAAGCT GGATTGCGCGGAAAGGCGTTAAGAATAACTCATTATTATCGTGATTTTCTTTGGGAGTCGGTTGAGGGCCGTTACGTACC TAATGCAGGTTTTCTTGAAGATGTTGTGTACGAGGATCCTTCTTTATTTCCACCTGCTCATGATTCTGCTCCAAATGAGG TTTCTTGTGAGACATCAATTGACCATCAGAACAACACAAAAGGCGGCGAAGCAGAGGAATCTCTGGATGGTGAAAATGAT ACAGCAAATGAAATAACTACCGGTGTGGCTGATTTGGAGTTACCAGATACTGGCTCTGCTAATGACACAACTGACCAACT ATCAGCTTCAGATGTAGATTCTCTGTTAGATAAATGCCTTTTACAGGCATTGCATACAACAGTGAAGGACAAGGACCTTC CCTTGCCTGGAAGCACTCTATGGTCAAACCATGTATTGCCATGTAGGCCTTCAGGAATGACTCTTGACATCAAGAAATCA TCCTACAAGAAGTTATCCAAGTGGTTACAAGCAAAGGCCTCCTCTGGTTTGGTATCAGTTAAAGAAGATAAATACAAAAA AGAGTTCATGCTATTGTCAGTAAACAGAAACCATGCTGATTACAAATCCTTTAAGCCTGAAAAAAGGCCAGTGGAGAAAA GTGACCAGTCCAGTGCTCACTCTGCCAATGAAACTAGTTCATCCAAAACGCTTGAGGTAGCTGAAATCTACAAGCCAAGT GTACATGTCAATTCCATATTTTCATCTGTGGGAGCTGACATAGGGAAACTTTATACTGCTTCTGAAGCTTCTGACATTGT CTTCAAATACGTTGAAAAAGAAAATCTTGTGAAACCAACAGATAAATCCATTGTGGTTCTAGACGCAATATTATGTGATG CACTGTTCAAGGGGGCTATTAAAAAAGGAACAGCTTATCCTTCACAAATTCACAAGAAAGATATAGGTTCTACATTTGTG AGCCGTATGCAACCTCACCATGTTGTGACAAGAGGGAATGAATCTGTAGTCCGTAAAGGTGCAGTTAAAACAATTCAGAT ATTGACAGAACGGCGGCAAGGCAACAAGAAGGTCACCAAACTCTCTGGTATGGAAACCTATCTTATAGATGCTGAAGCAT TATCATCAGAACTGCAGAAGAAGTTTGCTTGCAGTACCACTATTGCAGAACTGCCAGGTAAGAAAGGGCATGAGGTTCTG GTTCAAGGAGGAGTTATTGATGACCTAGCAAGGCATTTGATTGAACACTACGGAGTTCCAAAGAGATTTATTGAAGTTTA TGATAAAACCAAGAGATGA
Protein sequence (LotjaGi3g1v0055100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKKAVEAKSQQRLSGADRKKLKRSIKDKFPRASDSDLDALLPPKAEVTVAKFQNRVLVYVVEGGFPVFFDVDGRGSDIF PTVFALWMVPELLPAFMLKGGEVSRYVIGGADLMFPGISVPPEGLPSFAAGETWAVKVPGNPAPIAVGSTTMSSAEALKA GLRGKALRITHYYRDFLWESVEGRYVPNAGFLEDVVYEDPSLFPPAHDSAPNEVSCETSIDHQNNTKGGEAEESLDGEND TANEITTGVADLELPDTGSANDTTDQLSASDVDSLLDKCLLQALHTTVKDKDLPLPGSTLWSNHVLPCRPSGMTLDIKKS SYKKLSKWLQAKASSGLVSVKEDKYKKEFMLLSVNRNHADYKSFKPEKRPVEKSDQSSAHSANETSSSKTLEVAEIYKPS VHVNSIFSSVGADIGKLYTASEASDIVFKYVEKENLVKPTDKSIVVLDAILCDALFKGAIKKGTAYPSQIHKKDIGSTFV SRMQPHHVVTRGNESVVRKGAVKTIQILTERRQGNKKVTKLSGMETYLIDAEALSSELQKKFACSTTIAELPGKKGHEVL VQGGVIDDLARHLIEHYGVPKRFIEVYDKTKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 591 | 591 | 3.4E-240 | ||
| MobiDBLite | 1 | 28 | 28 | - | – | |
| Pfam | 2 | 90 | 89 | 2.0E-20 | ||
| CDD | 9 | 81 | 73 | 4.30357E-19 | – | |
| MobiDBLite | 13 | 28 | 16 | - | – | |
| ProSiteProfiles | 93 | 174 | 82 | 12.399 | ||
| Gene3D | 101 | 181 | 81 | 4.6E-12 | ||
| SUPERFAMILY | 103 | 179 | 77 | 9.11E-12 | ||
| MobiDBLite | 203 | 238 | 36 | - | – | |
| MobiDBLite | 363 | 386 | 24 | - | – | |
| SUPERFAMILY | 387 | 488 | 102 | 1.07E-13 | ||
| CDD | 418 | 451 | 34 | 0.00241586 | – | |
| SUPERFAMILY | 471 | 588 | 118 | 4.19E-24 | ||
| Gene3D | 503 | 588 | 86 | 4.5E-13 | – | |
| Pfam | 503 | 580 | 78 | 2.3E-22 | ||
| ProSiteProfiles | 505 | 577 | 73 | 18.328 | ||
| CDD | 505 | 586 | 82 | 9.86916E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Formation of translation preinitiation complex | The joining of the small ribosomal subunit, ternary complex, and mRNA. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi3g1v0055100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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