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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0136900 |
| Transcript ID | LotjaGi3g1v0136900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin, putative; TAIR: AT1G31340.1 related to ubiquitin 1; Swiss-Prot: sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2; TrEMBL-Plants: tr|C6SXX2|C6SXX2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0136900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17513681..17518640) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCTACTAACATTGCAACCAATCCAATCCAATCGTTTTATTTTTTTCATCAAATCAAGCACATATACTATCTTTTTCC CAATATTCCAAAACCCCACATATACATAGCTTAAAACTTACAACCAACACACACTCATCACTTTCAATCACTCTTTCGCT TTTCCCCCTTCTCTCTCTCTCGCTCTCGCGCTCTTGCAATTCCAACAAGGGTCAGAAGAAGGGTTCGAAGAAGAAGAAGA AGATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTC AAGGCCAAGATCCAGGTTCTCTGATTTTATTTTTCAATTCAATTTTGCAAAATTAAACTGTGTTGATTTCATCGAGTTAG GGTTTGCGAGTTGATTGATTTTCTTGGTTTGTGTTGTTTGATCATGCAATTATAGGGATTATAGGTTAACAATTGAGTTA TATGTTATAGGGCACAGAGAGGGTTAGGGTTAATTTATTTTGAAGAAAAAATTATTTGTTTTGGTTTTTGTTAGGATATA ATTTGAAAAATTGAGGGATTAGTTCTCAAAAATAAGTTGTAAACCCTATCATCCATTATGTGCCCATAAAAGAAAAAGCT TTATGTGAGTGGTGTTGATCGAACGGTTCCATTGTAGAGGATAAAGTGTAACTAACTATAATGGTTGATTGAAAAATCAC TGATTTAAGTTAATAAAATTTCAGTTATTTAACAGTTGGATGTTTGGTTTTCGGTTCAAAACAACATTTGGTACCTCGTA AATCGGAAACATGATTTCCGATGCACAATCACCCAACGGAATGCCCTTTGTTGGATTGGGCGAAAGTACTTTCACATTCA CGAAACGGAAATCCAAACAGGTGTAATACACTTTGTAGCTCCTTAATCCTCACTTCCTTACTTTAGGGTATCAAATTCTA GCTGGATAGTTATAGTTTAGTGCCTTTGGTCTCTTAGTATGTTTTAAATTGTGGTCGCGACACAGACACACAGTTGTGTC ACGGTTCTTCTTATTACGGAAAATTGTGAACGAATGTGGCTGTCGCAACTGAAATCCGGTCATGTTACAGCATCCGAAAC CTCCAAAATCTTGATGTTGTGGCAACCACAATCGTGGACCTTGGTTTAGAATCACGGTCTCTCAATCCCAAGTTTAGTAT TAATAGATGTGAAAATGTAAAAGATTATGAGTCAAAAACATCGATCTTAACTGTTTTTAGCTTATGAATATGAAAATAAG TCCGAAAGTTTATGTGTGATTCAAAATCTCTTTTATTAAGTTCATTCTAAGTGTATTGAAGTACTATTCAGTGTTGTCAA ATCGCGATCGCGGACCATCGCGGTGAGCCAACAATCCACTATTTCGGCCGCTATTTAGCAGCCAATAGCAGGAATAACGC GCTATAGTGGGCAATAGCGGTGTCGCGATTAGCCAAAAATCAGCTACGCTATAGCGGCGTAGCCGCTATTTGATAACACT GGGACTATTTAAGCGCTTATTGCAATAGATAGGGCCAAACAAATTGAAATGAAGCTCTTTCAAGTGGGCCCTTTATCTGT TTTATATGATATGATGCCTGCTGAGTTGGTGTATAAATGATTGTATAATTTGTAATTTGCATAGTTAATTTGTAAGGATG TTTTTCAGAAAAGGAACTACTTCCCAAAATATTGGCTAAAACAAGCACGTGAAATTTAAAATAAAATAAAAGTATACTTT ATGGGACAGGGGTGTTTAGCACAACAATATTTATGTAATTAAGGTTGTTAAATTGTTGTGTTTTTGTTCTAGGAATTACT CTTTAGATATAGAGCATGTTGTGGGCCAATCATAGTTCTAGTGTTTGTGGTTTCTCAATCCTAGATTAGTTGAACAGATT TGAAAGCTGAAAGGTAATGATGGTAGCTAGTTGATAAATTATTGTTATAAAAAAAGCTATCATTACATGAGACGATTGTA GCTTTTGCCAATGTATCTTATGAAAATAAGCCAGAAACAGCTTATGTGGGTTTTGAGAGCTGTTTTACTAAGCTTATTCT AACTGAAATCAAAATACTTTGTTAGCGGTTATTTCAATAAATAGGTCAAAACCTATTCATAGTGATAGCGTTTGAACATA ACATTTGAAATTTTGTTCCATTTTTGGTGCATGTAACTTACATCAGTATTTTCTAACAATTACCAGTGGAATGTGTTTGT AGGACAAGGAAGGCATCCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCT GATTATAACATACAAAAGGAATCGACTCTTCATTCGGTCTTGAGGCTCAGGGGAGGAACTATGATTAAAGTCAAGACTCT AACTGGGAAAGAAATTGAAATTGACATTGAGCCAACTGATACAATTGACCGGATCAAGGAACGTGTTGAAGAAAAAGAGG GAATTCCACCTGTGCAGCAGAGGTTTTTATCTTTTGTTTTTCAACTATGCTTATTGGGCTTGGCTAATTCGTTGCTAAAT GATTTAACTCTTATATGACAATGTGCACATCTCTTTTTAGTTACAAAAACTTGTGTTTCTGATCTCATACTTGAATGTTT CTGTCCCTCTTTTTTGTTATACATATAGATAGAGAAGATACATGCTTGTAGATATCATTGATTCATCTCTTGGCTTGTTC TAAACCTTCCTTGTCTAGGGCTTTGCTTAATGGTCATGTGGTGATCCTGTAAACTACATTAACATGTAACATTGTCCTTT ATAAAGGGATAAATTTTGTCGGTACAAAATGCAATTTTTAACTTCATGAAAATTTAGTTTCAGAAGATTTTTTCTCTTTT CTACTTTTTTCTCTCCCCATTATTTATTTATTTATTTATTTCTATTCACACACTGTAATTCATCTTGTACTAAATACCTT TGTTGTCAAGAAACAAGATTGCAATCTTAATCGGACGATCTTACATGCTCAGTGCCTCCTCTGATTGCAGTGACCGGCAA TGATGATCAGCAACTGGTTTTGACGACCCTTTGTCTGTATCTGTATTTCTAGTCCCGCCCTCATCTTTTCTGTTTCTGTC TCTCAACTGTTGTTCTTCCTTCATTTGTCTCAGTTTCCTTTGTCTCAACTCTTCATCTCTCTATCTATAACACTCAATCA TCGTAACTATTTACCGTCTGTCTTTGCCTCCCTGCCTATTGTGTGTTCTTATATCCCCCCCGCTAAATCTCTCTGTCTAT TATTGATTTTGGGATGGGCACTGAATTCATGGCAAAACTATACTTTTTTTCTTTATCCTCATTTTTAATTTCATTATAAA ATATAAAATAGTTATTAAGATATAATACAATAACTATAAAATAAAGATCTAAATAATTAAATTCTTTATTTCATAACAGA TATTAGTTAGCATATATTTTATTTTGAAATATATTTTTATTTTAGTAGGATCTAATGATTTTATTTTCGATCCTCTGATT TACTATCTTTCACCCGCTCCTGGTTCTGAGATCTTAATCTTGATAAAATTGCTAATTAAGAAGCTCACTTTCATGACCTT GTTATAAACTCATATATCACTTGGTTTTTGTTTTGTAAATACTCTGTAAGTACTGTCATTGCTGGATACTATGTCGATGT AAACATATGATCTTGAGATATGTTTGTAATGTTTATACATATTCATTCCTTAGTTGCTGCACCATTTGAGTGAAGTACAT ATTTTGCTTCTTGTCATTGATATGTTGATACTAGTTCCTTTGAATTGCATTTTCATACTGAAATTGTTAATGTTGGATCT TGTGAACAATGCTCAATTGCTTATGCTGCTTGCCCTTGTCTTTAATTTACCTGATATTGAAGAAAGATCGTGAAATTTTA TTCACTTGCTTATCGATTGAAGTGTTTGTCTTGTTTCAGATGATAATCCTTTTATTTTTCTTCCATTGTTACTGTTTCTG AAAATTGAGAGTTTTTTGTATTCTGTTGGAAACATCACAATCTTACAATTCTTTCCACTTGCTTCAGGCTCATATACGCT GGTAAACAGCTTGCTGATGACAAAACTGCTAAAGAGTACAACATTGAGGGTGGTTCTGTACTTCACTTAGTGCTTGCATT GAGGGGTGGTAGTTATTAAAATTAGTTTTTCAGGCATGGTCTTGATAAATGCCTGACTCGCATCTGAACTTTAAGACATG AAAGAAAGTTATATACTGCTCTGTCTCTGAAGACATCATTGGTCTTTTATGTGCTTGGATTTTGTAATTTTAAGGCTACT ATTGGGGTTAAATATCTTGAACTTGTATGCTTTTAATCCGGAAGTTCGTTTTTATATTGAATTTTCTAAACCAAAAATTC ATTAGCAATAGTTTGGGAACATTGGTGATTAAACTCTCATGCTTCTCTAGGGAGCGGTCTGACCATGAAACAGTCCTGTC ATAATATCATTCCAAAGTAATTGGCTAGGTTTTGATGCCATTTTGGTTAAGGTCGTTTTACTAACAACGCTGTATTGCCT GGTACTCAAACGCTGATGGGTATCTTCTCTACCATTTCTTAATTCTGAAAAACCAGATGTACTTTGTGTCATCTCTTGTG TTGCGCTATCTTTGTGGTTGTCTCTATGGTAAAGGGAGGGCAAGGAAGGCTAATGTTATCGGAGGGTTTAAGTCATTTTG GGTTGGTTCATGGATTGTTACTGGATAGGGTCATTGAGATGATTTTATTGTTTATCAAGTTATATTTATTGTTTGGATGC AGCATGTTGAGGCCCATGTCCATGTAGTGTCTTGTTTAAATTTACCATTTTTTTTTTGAGGGGCAAATTACCATTTCAGT TTGGTTCATGCTTTGACAAAAAAAGGAAGGGTTAATGATGTCCATTTGTATGGACCAATTTTGTTGGTTCTATTTGAATA
CDS sequence (LotjaGi3g1v0136900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAA GGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGTAAGCAGCTGGAAGATGGCC GCACTCTTGCTGATTATAACATACAAAAGGAATCGACTCTTCATTCGGTCTTGAGGCTCAGGGGAGGAACTATGATTAAA GTCAAGACTCTAACTGGGAAAGAAATTGAAATTGACATTGAGCCAACTGATACAATTGACCGGATCAAGGAACGTGTTGA AGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGGCTCATATACGCTGGTAAACAGCTTGCTGATGACAAAACTGCTAAAG AGTACAACATTGAGGGTGGTTCTGTACTTCACTTAGTGCTTGCATTGAGGGGTGGTAGTTATTAA
Protein sequence (LotjaGi3g1v0136900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHSVLRLRGGTMIK VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 78 | 78 | 1.2E-44 | – | |
| CDD | 1 | 76 | 76 | 1.81784E-50 | – | |
| PANTHER | 1 | 152 | 152 | 2.0E-97 | – | |
| PANTHER | 1 | 152 | 152 | 2.0E-97 | – | |
| SUPERFAMILY | 1 | 76 | 76 | 8.91E-33 | ||
| ProSiteProfiles | 1 | 76 | 76 | 29.603 | ||
| SMART | 1 | 72 | 72 | 2.3E-33 | ||
| Pfam | 3 | 74 | 72 | 4.3E-33 | ||
| PRINTS | 11 | 31 | 21 | 5.6E-38 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PRINTS | 32 | 52 | 21 | 5.6E-38 | ||
| PRINTS | 53 | 74 | 22 | 5.6E-38 | ||
| ProSiteProfiles | 77 | 152 | 76 | 26.598 | ||
| SMART | 77 | 148 | 72 | 1.4E-27 | ||
| SUPERFAMILY | 78 | 152 | 75 | 1.35E-27 | ||
| Pfam | 79 | 150 | 72 | 2.8E-28 | ||
| Gene3D | 79 | 153 | 75 | 1.5E-33 | – | |
| CDD | 79 | 152 | 74 | 1.48386E-47 | ||
| ProSitePatterns | 103 | 128 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0136900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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