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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0175600 |
| Transcript ID | LotjaGi3g1v0175600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A0L9UMH3|A0A0L9UMH3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24413948..24418557) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCAGGAAGACAATGCTGGAAACTACGCCAA AGCCTTCCCTCTCTACATGAACGCTTTGGAGTATTTCAAGACCCATCTCAAGTACGAGAAGAATCCTAAGATCAAGGAAG CGATTACGCAGAAATTCACCGAGTATTTGCGCCGCGCGGAGGAGATCAGGGCTGTTCTAGATGACGGAGGACCCGGCCCG GCTTCTAATGGGGACGCTGCTGTGGCCACGCGGCCGAAGACGAAGCCGAAGGATGGGGAAGGTGGAGATGGGGAGGATCC CGAGCAGGCGAAGCTCCGGGCCGGGTTGAACTCGGCGATTATAAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTGCTG GGTTGGAGAGTGCGAAGCAGGCGTTGCAGGAGGCTGTGATCTTGCCTGTGAAGTTCCCTCAGTTTTTCACAGGTTGGTTT GCTTCATTCATCACTGTTAGTTGCTAACCATTAGTTGCTCAATGTTTGATTTTTCTAGTTACAAAGTTATGTAATTGAAA CTGGGCATCATGAGCTAGAGGCATTCTATTTATGCATCTTATTGAGGGTTGAGGATAGCAATTTTATTTGGTTGAAACAT TCTTTTGTAGCTAAGGTGGTGTTTGGTAGATATGTTACAACTAAATAGGACCTATAGGTTTTGCTCTATGTTTGTTGCAT ATATATTAGAAGTAGAACAGAACAAGACATAAAGTGTGAAAAGTGCTACATTTTGGTTCGATTTAAAACGGTGGAATCAA AGAGAACTCAGTAGTTATATTTATATTTTTTGCTCAGTCCACATGTCAAGTGCTGCCTAAGGGTCCGCTTGTTTCAGTGG GTTGAAAGTTGAAGGGGGAATTGGAGGAAGGAGTAAATAATTTCAAGTTTTCAAGCAAAGTTGTGCCCTTGAGTGAAAAT GATTTACATTTTACTTTTCACCTTCTCATACTTTTGCTATGCCAAACCAGTGTGAAGTGGATTTCTTTCTAAACTTTCCA TCTTTCAACTTTCTGCATACACTTACATGCTGGCCTTCAATTAGAACTGATGAAAACCTTGTTATATGAACAAGATACCA TGTTTATACATTTATTTATTTATATGGAATTTTGTTAAATGTTGAATATGTTTCCCCGTGGTCTTTTTCAGGTAAGCGAA GACCCTGGAGAGCATTTTTATTGTATGGACCACCTGGAACAGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCT GACTCCACATTTTTCAGGTAAATTTATTCTGCTACCTAGTACCTACATTTCATATTAACTGTCCAGAAAGATAAGAAACA TAAAATGCAATTAATGTTGTTAACTTTCGGAAAAGATTTTTATTTCTTCCTATTTTACCCTTTAAAATGATTTTTTATGT CTCCTCATTTATTATTCGGATGATGGCATTATTTGGAAAAAAACATCAATTAATGCTCTTTTGAAATTCTAAGTGAACAT AATAAAGTTCACTCGAGGAAAATCTGATTACAACAATGAAGTTTATAGGATTGCGAAATCTCCAATCTGGAACTTACCGA ATTAGAAGGAAAATCCTTGGATTGAATCCATATTCATACATGGATATATACAGGGTTGTTAATAGCGCGTGGCCGCGCGC TATTGTGGCGGAGCGTGGCGGCACGACGGCTGGAGGCTGTAGCGGCGCAGAAATCGCGTAGCAGTGGTTGTGCCCGGGAT TGTACCCAAAATCGTGTCTGGTGCGGCGCGAAGGGAAAAGAGGGATCACAAACCCTACTAATCCGAGTGAAAATCCCAAA TTCCCCCAGTTTTAAACATTAGTTCAAACTTTTTAAGGGCATTTTGAGGCTTTCTTTCCATTTAGAGCCTCCGTGCAATC TCCTTTTTTTCCCGATGAAGTTGTGCGATCTCCTTCCTCTTCCTCCTTCCAGCCACCTTCTTCCTTCTCCTGCAGCGTAG CGGCTATAACTCTACCTGCCATAGCGCTACACGCTATAGCGTTTTTTGGGCTTGCTGCTACGCTGCACCCTTTTATCAGC ATTGAAATTGAATTGGAAGTAAGAAATCTTATAAGACTAAAAGACTTTCCCTAACCATAATTACGTTAAGGGTACCTAAA TAAACTAAATAAAATTGGAGTTCGTAACAAGAATGGAGATTAATCTGAATTTTTTTTTTTTACTTTTCTATCAATCTTTT ACTTTGTGTTTGGATAAACAAAAGAGGAACTAGAATGAAAATGGTTTAGCTTCTTTGGTTTAAAATAATACTAAAAGTTA ATGAATTATGTCGGGTGGTGCCATGATTCATTAATATTTGCTGATGGCGTAGCATTTAGAAGATGGCATGCATGGTTATA ATTTCCTTCAAATTCATCCTCTAACGTTCTTTTGTGTTTTGACAATAATTTTGTTTGTAATGAGAATTTGAGATGCATTT AATATTTATTTTAAAAAAGGCCTTCTGTATTGCTATGAATGTAGGTCCATAAGTGGACATGTTCTTGCAAGCGTTTTTAA CTTTTGAATTCTTCACCAGTATTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAGAGTGAAAAGCTGGTGTCAAAC CTTTTCCAAATGGCTCGAGAAAATGCCCCTTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGTCAGCGCGGAGA AGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAACTTCTGGTGCAGATGCAGGTAATATTTTTATGGTGAGGAT TTGTTGTCAAGCTGAGAAATTAGTTTGTTTGTTTATATTTGAATTGCATTATGCACAGCACGAGTCACGACTAAAAGTTG TCAAGAAGCCTTAGTCCCAGTTATATATAGATCGGAGTCCTTTATCAAAATAGTTTCAAATCATGAAAAAAACATAATAT ATTTTTGAATTCTTTAATATAAACCATTTAGGCATAAGCTTGCTTGTATTGCGATTCTATTTAATATGTAGGTTTCCTTG GGTTCTGTTCTGTCTGTGCTTTTGATACTGTTTCAAGAACTTGGAGGTGTCGTAAAACTGAGCGCTTATTAATTTGTGTT GCATGCTTTAATTTTTTCCTGTTGGAATAAAAATAATATAGGTTTTTGTGGCAATTGCTGTTTTACAATTTTTCTTGTTT GTGTGTGAATTGTGATTTGTTTATATAGTCAACATGTTCGACTTTTTTTAGTTTGTGTTTTCAATGGGATATATGTTTAG TGTTATGTAACTGAACTACTAAAGCATGTTCTACTGGGTATCAAACACTCTGAAGCGTGTAATTGTTCTTGCCTTCGTTC CTATCCTTCACCTCAAATTTTGTATAGTTACTTGGTTTGTAGTCATCCAGACCAGAAAGTTTGCATGCAACTTTTGATTA ATAGATCTGGTCAGAATTTGCCCCCCCCCCCCCCCCAAAGAAAAGTCCCCAAATGTATATTATTATCAAAAAATTGAATT GGTTATCTATATATTTATGTTTATTTGATTCACTTTTTTGTTATTAACATCAATGTTGGTTCCAACAGTTTTGATCGATG TTCTCCCTTTTCTATTTTTCTTTATTCAGCCTAGTTTTTCCACTTTGCATTGCAGGGTGTAGGAAACAATGATCAGAAAG TTCTTGTTCTTGCAGCAACAAACACACCCTATGCTCTAGACCAGGTAAGAAATAATTCTGTTGATGTGTATCCATATAGA GCCTATATAATGTTGTTCAATCAATCTGTAATTTCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCTCTAC CAGATTTGAAGGCCCGCCAACACATGTTCAAGGTAGGGCAATTTGCATGATTATGAGTTATGCATTTTATTGGGCTTGAT ATTATTCATCTACCAAAATGGGTTTATAATGCTATTTTTTTTGGCTTGATATATTGAGCAGGTACATCTCGGAGATACCC CCCATAACTTGAATGAAAGTGATTTTGAATACTTGGCCAGCAGAACAGAGGGGTTTTCTGGTTCAGATATCTCTGTTTGT GTAAGTTTCAACTTTATTATGAATTATCTGGTTTTTATAAGCTTTTACTTTGATGAATTTAAAGTAAAATGTTTTTTGTC CTCTTTAGGTGAAGGATGTTTTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAATCCTGAGGGT ATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAGTGCAAATCACAATGCAGGATCTTGCTGCAAAAGGCCTTGCTTC TCAGGTATTTTAGATGCTATAGATTTTGATGGCACTAGGAAGTCTCTCTCGTTCTCCCTCAACGATAATTGGAGAAGCAG AGTCATTATGTTTTTGGACTAGGTTGTTCATATGTATTTTTAATCCAAGTGGCGGAAGTGCTTACTGCTTTAAAACTGAT GCAGATCCTTCCACCCCCTATAACGAGAACAGATTTTGAAAAGGTACTGGCTAGACAAAGACCTACAGTAAGCAAAAAAG ACCTTGAGGTTCATGAGAGATTCACTAAGGAGTTTGGAGAAGAAGGTTAA
CDS sequence (LotjaGi3g1v0175600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCAGGAAGACAATGCTGGAAACTACGCCAA AGCCTTCCCTCTCTACATGAACGCTTTGGAGTATTTCAAGACCCATCTCAAGTACGAGAAGAATCCTAAGATCAAGGAAG CGATTACGCAGAAATTCACCGAGTATTTGCGCCGCGCGGAGGAGATCAGGGCTGTTCTAGATGACGGAGGACCCGGCCCG GCTTCTAATGGGGACGCTGCTGTGGCCACGCGGCCGAAGACGAAGCCGAAGGATGGGGAAGGTGGAGATGGGGAGGATCC CGAGCAGGCGAAGCTCCGGGCCGGGTTGAACTCGGCGATTATAAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTGCTG GGTTGGAGAGTGCGAAGCAGGCGTTGCAGGAGGCTGTGATCTTGCCTGTGAAGTTCCCTCAGTTTTTCACAGGTAAGCGA AGACCCTGGAGAGCATTTTTATTGTATGGACCACCTGGAACAGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGC TGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAGAGTGAAAAGCTGGTGTCAAACC TTTTCCAAATGGCTCGAGAAAATGCCCCTTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGTCAGCGCGGAGAA GGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAA AGTTCTTGTTCTTGCAGCAACAAACACACCCTATGCTCTAGACCAGGTACATCTCGGAGATACCCCCCATAACTTGAATG AAAGTGATTTTGAATACTTGGCCAGCAGAACAGAGGGGTTTTCTGGTTCAGATATCTCTGTTTGTGTGAAGGATGTTTTA TTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAA GCAACAGGGTGCAGTGCAAATCACAATGCAGGATCTTGCTGCAAAAGGCCTTGCTTCTCAGATCCTTCCACCCCCTATAA CGAGAACAGATTTTGAAAAGGTACTGGCTAGACAAAGACCTACAGTAAGCAAAAAAGACCTTGAGGTTCATGAGAGATTC ACTAAGGAGTTTGGAGAAGAAGGTTAA
Protein sequence (LotjaGi3g1v0175600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARENAPSIIFVDEIDSLCGQRGE GNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQVHLGDTPHNLNESDFEYLASRTEGFSGSDISVCVKDVL FEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQITMQDLAAKGLASQILPPPITRTDFEKVLARQRPTVSKKDLEVHERF TKEFGEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 4.1E-258 | – | |
| PANTHER | 1 | 282 | 282 | 4.1E-258 | – | |
| SMART | 2 | 79 | 78 | 3.1E-25 | ||
| SUPERFAMILY | 2 | 81 | 80 | 7.32E-26 | ||
| CDD | 4 | 77 | 74 | 9.08777E-38 | – | |
| Gene3D | 6 | 75 | 70 | 4.0E-25 | – | |
| Pfam | 7 | 70 | 64 | 1.6E-21 | ||
| MobiDBLite | 73 | 109 | 37 | - | – | |
| MobiDBLite | 91 | 109 | 19 | - | – | |
| SUPERFAMILY | 120 | 391 | 272 | 1.12E-47 | ||
| Gene3D | 125 | 282 | 158 | 1.3E-81 | – | |
| CDD | 133 | 281 | 149 | 2.14417E-22 | – | |
| SMART | 162 | 311 | 150 | 9.4E-14 | ||
| Pfam | 167 | 282 | 116 | 2.2E-38 | ||
| PANTHER | 282 | 407 | 126 | 4.1E-258 | – | |
| PANTHER | 282 | 407 | 126 | 4.1E-258 | – | |
| Gene3D | 283 | 387 | 105 | 2.4E-21 | – | |
| Pfam | 341 | 405 | 65 | 1.6E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0175600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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