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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0513800 |
| Transcript ID | LotjaGi3g1v0513800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93106134..93113108) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTTCCACCTCTTTCTATTTTTATCTCTCTCATCTTATCATATATCACATCTCATATTTTATCTCTCTTACTTTTTT TTTTCTTCCTATCTCTCTCATCATTCCACCTGTTTATCTCAAAAGAGAGGTGTGAATATATAATTACCCCACCTAAAACG TGTACTCTAGAGATTGAAGAATGACGGGTCAAGTTCCTACTTGTACAGTACTAGTTACAGAACCCATTTTGCACAGCGTA TCCCAAACCGTACAAAAACTCAACGCGAAATAGCAGTTCCATCGCCATTTCCCACCTCAAATATCACTTTTCCAAAATTA TCACAAATCACTCACACACGAACAACGACGACGGGCGAAGAAACCAAAGCACTTTTCTCGTTAACGAACGAAATCGATTT CGTAACCGCAACGATTCAACTCTTCTCTCTCGCTCGCCATTTTGAAAACCACAGAAAATCGATCGGAGATGGGGAGTTTG GGAGCGATTGTGAAGCATCCAGATGATTTGTACCCGCTGCTGAAGCTCAAAATGGCGGCGAGGCACGCCGAGAAGCAGAT CCCTTCGGAGCCGCATTGGGGCTTCTGCTACTCCATGCTCCACAAGGTTTCTAGAAGCTTCGCCCTCGTCATTCAGCAAC TCGACACTGATCTTCGCAACGCCGTTAGTTCCTTCCTTCCTTCTATCTTCATCGTTCATTCTTTTCTCGATTTTCATATT TTCTCTGAATCTGAACTTGCATCTCTCTAACTCTCTCTCGCTTTTTCCAGGTTTGCATATTCTACTTGGTTCTTCGAGCT CTGGATACCGTTGGTTCGTTCTCTTCTATTGCGTTGACTACCTGGTTCTTCCATTTTTCATTCTTCCTAATTTATTGATT TTATTTTTCAACTGTTCAATTTATCATCGTTAATCTATAGTTCTGATTTCTGAAATTGCTCTAAGTCTCTGTGATTTTAT CTTAAATTCAATTCCGTTGGTTTGTTTTCTTGGTTTATTGCTTCGTGCCTCTAACTAAGCCTAATATGATAAATTGATAA TGAACTATAGAGATATATAATTTTTTTTTTGGTTAATTGTTGTGTTACCACGTGTTGTATAGCTGAATCTTTGGTGTTTA ATTTTTTCTTGATTAGTTTAAAGCAGGGATTAATATTATCATTGATAATCTGTATTTCTGAAACTGGTCTAAGTCTCTGA TCTTATTGATGTAATGTGCTTGTGGTGGCTATTGCCTTTGAGTGATGTGTATTTGAATAATTGAACCTTAAAACGAATCA CTCTGTAGAAGGATTGTTCTGTTCTTCAGAAGTTTAGAGAATGTCTATCGATATTATTGTAACTCTTTTTTATTTCTCAC AGAGGATGATACGAGCATAGCTACAGAAGTAAAGGTCCCCATACTGAAAGCTTTTCACCGTCACATCTATGATCGTGATT GGCACTTCTCATGTAAGTCTGTTTTTCTTTTGTTACTTTATCAAAGTAAATAGATTTTTAATTTCATTTTGAGGAAGGGT AAGATCCAATGTAATTTTGACGACTCTTTTCCAAGCTGTTGTATCCTTTCAGAAATTGGTTTTTAACTTCAACCATATCT AACTTGCTTTTTCAGAAATTGGATTAGATTTTAAACTGTATTCTGTATTATTTACCATGGCAATTGCTTTTAGTGTTATA AATTATTAAGGACAACCTTCATCAGTCTTCACGAATATAGTTTTAGAGGGTACGAATGTCTCAAATGTTAGTGATGCTGA TCTGCAAGCTAAATGTTTTCTAATGTTACAAGGTGGCACAAAGGAGTACAAAGTTCTCATGGACCAGTTTCATCTTGTTT CAACTGCTTTTCTGGAACTTGCAAAGAAGTCAGTTCTTATCTTTGCACATTTATCTAAATGAAACTTCAATTAATATTCT GTAGTGCATGTGGTTTTGACGTTGCTGGATATTTCCAGTTTTCGGCCCCATTATTGCTTGTTATGTTGGGGGAAGTGGGT GCTTACTGTTTATCTTTAAGGCATGCTACTAATTTCATTTAGAAGTAAGCTGAGAATGTAATTTTTTGTGAGATTCAATT TGTTTTCTTTTTTCTCTCTGGAGTATCAAAATTTGGACACAGAATTGTTGTTTCGTGCTGTTAAGATGGAATGGAAGTCA TCAAAGTCATGCTTCTTTTAACGTAGTTATTATATCGATCATTGACTACTGAACAAATGATGGATAACTATGGTTCTCTT TGTTCAAAATTGATAATAATTATCAAATTTTTCCATGTTATAGAGGTTTCTTAATTTGTATTTTTTCATCCGCTATCACA AAAAAGTTTAGTTATGTGTCCATTCTATTTGTGTTCCACTTGGTCTTTGGTAGGATGCCCTGTAAATTATTTTGAAGACT CAAGGGTCTGGTTCTCTAAATTGCCAGTGTGTTCATATTGTTCAAAATAAATGTATTTCATGGCAGAACTGAGTCTGTTA GATGTTCTATAGATTCATTGTCTTTATTAGCTTCTTTTAGGTGTATATATGATTAAAGTTTTGGCTTTGCATTCTAGGAT GAGAAATTAAATGTCAGTTAATTATTTTTGCAGCTATCAGGAAGCAATTGAAGACATTACTGACAGAATGGGTGCTGGAA TGGCCAAATTTATTTGCAAGGAGGTTTGTCATGCATGGATTCTGTTCTGCATATATTATTTTCCTATTTTGTTTTAGCTT CGTTACAGTTAATATGGTCAACCTCTGATTGATGGGGCATTTCATATAAAGCTTTTGATTCCTTTGAAGGATTTGGCTAT CTGCTCGTTTCTGGGTTTTACTGCTGAATCTTAATGATTTAGGGAGAGGGGGGGGGGGTAATATAATGAAGGTCTAGAGA ACAGATAGTGAAGTAATGTTACTGAAATGCAACATTTTCTTATAATTTGATGCTATTGCATCTATTTGAAATTGTTATTT GTAGAGCACTGTGCTGCATGAAGGTGTTTGCCATGTTTTCAACATAGAAATATCATCTTGATTAATGCCAAGAGACTTTT CTCTAATTTGCAGGTAGAAACAATTGATGACTACGACGAATATTGTCACTATGTGGCAGGACTTGTTGGGCTGGGTTTAT CAAAGCTTTTCCATGCCTCTGGTAAAGAAAATCTGGCAGCGGATTCCCTTTCCAATTCAATGGGTTTGTTTCTTCAGGTA TCATGATAGTTAGATACACTAAAACGATATACATATGATTATTTACTTATATTAGTTAACCTTTTGAGACTGCAGAAAAC AAACATTATTCGAGATTATCTGGAAGACATAAACGAGATCCCCAAATCACGCATGTTTTGGCCACGGCAGATCTGGAGTA AATATGTTAACAAACTTGAGGTTTGGCTCGATAAGAATCTATGTTTCTTCCAGTCTTAATCATTCTTTCACCCTGTTCTC CCCCATTCCCCATTATCGAATGAATTTCTTATCACTTGGTGTGGTGGTGAAAACAGCTTTCCTCCTGTCCTACGATTATG TTTTATGCACAAACCTTTTCAACGTCTGAGTGCGCTATGTATGACTTTCTTCTTTTTGTACTCCAATTAAAATTATATAA TCCAGGACTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGTCTAAACGACATGGTCACTAATGCTCTGATGCAT GCTGAAGATTGCTTAAAGTACATGTCTGATTTACGAGACGATTCTATATTTCGCTTTTGTGCTATTCCCCAGGTGCTGTC CTTTTGCTTATTTACTTCTGATTTAACTTTTATGTAACTTATCTCACTCTTGTCTTGCAATGATATGACATCATTTATCA GCATGTTTAAGCTTGAAATATTTTTTACTTGCATATCATGCTATGATTCAGAAGAGTTCAATCAAAAGCAACTTTCTCTT CCTACTCTAGTTCAAAGAAAATACGTTCTATCTGATTTTTTTTTCAAGTTTAATGCTACCTAAAAGATGTGCAATAACAA CATGTCATACAAATATTTATGGACATTAAGTGTTTTAATAAAATGTAGTGACCAACTTCAAGTCAGAGTACTTTATCTTA AATTGTAATTTCATACACAATTTATGTGTATGTGATAGATCTTCTTCATATGGCTGCTTGGTTTTTCAGATCATGAGTGT TCTAACACTCATTCATGAGTGTTCTAACACTCATAACACATGCTAACACTCATTAGCTGTAGCTATAATGCTATATAACG TCGCTGATTTAATATAGATAAGATTATGCAAAATAAGAGTAGTTTCTTTCTAGAAGCAGAAGCTGCATAGGTCTTAAGTT GTTGGTCTCCCATTTAGGTTAAAACAAGTTATAACTCTTTGTTGAGGAATTGCTAGGTTTAATATGTTGTGTGAATATCT TCTTCATACATTTAGGCCGTTCAGTTTTTAGTTAGTTTTTTTTTCTATATTATTTCCTGTGGATATGCATTTTATGTTCA TTGATTTTGTATCAATAGCTGTTTTCCTACTTTTTCCTAGTAGCTCTTGGTGTTTATTTGACGTATGCTGTAACAGATAA TGGCAATTGGAACACTTGCAATATGCTACAACAACGTTGAGGTCTTCAGAGGTGTAGTGAAAATGAGGCGAGGTGAGAAT GAATGGGTTGATACTAATTTCCTTGTAATTTAATTTATAGCTTGCTAAACATGAAGCTAAAATTGGTTAAAGAGTAGGAA AAAAAGAAGTCATGTCCTACAAATAGTGAATCGTGGCAATTTGCATCCATGCTACTTGCTGCATTAATCTTCTTAAAGCT GCATCTTGCAATCCCTTTGCTAGGGTGTTCACATATGCAGTTGTGTCTAGCATTATTTTTGTACAATGGGTGTGCTCATT GTCACTAAACATATTCTGTTGGATTCTCTGGTTGCATGACTTGCATCTACAGTGTTCAAATATTCAAATGTACATAAAAC TATTAGTTAGTGCACATCTTGTTCAAATCTCTATGGATGTTGGTTAAACACCAGAAGCCCAGGACCTGCAACTCTATAAC GGACATTCCTCATTTTGAACTGATATATACATTAGTTTAGGTGTTTGTACTGTTTCCTCTCCCACTTCATTTGAAAAGAT TTTGTAGTTATCTGGGAATTAAATGGGCCAACATTTTTTGCTACTGTTATGATTTCTTTTTTGTAAGATTGTTCAAGTAG CTGTTAATCTCTTCATTTTGGTTATGATTTATAGGTCTAACTGCCAAAGTGATTGATCGGACAAAGACCATTGCTGATGT CTATGGTGCTTTCTTTGATTTTGCTTCTATGTTGGAGTCCAAGGTAAGAAGCATTTGTCATCCTAATCAAAGTATGATTA TGTTTGCAACACAAGAATGCGGATGCTAGTGATGTGTTGTGTTTTACAGCTGATAGTGTTCCTATTTTATGTTTTGTAAC AGCTAATACATCATTAATATTGCCAAATTAAAATTTTCAAATTTTTTGTTGTAAATGAAAGAAGAGTAGTGGTGCTTAAT TTCATATATGTATAGCCATTTTTTCTTACATTATAGCCACAATGCTGCATTTGATATGTGCCAATTCGTTGACAGAACAA TTAAGCCAGTTGCATTCCCGTTGTTTATAAGTCTTGGTTGGTTTGCAAAGTCTCCTAATTTCCTTGCACTCCTAAGTTAT TCTGCCCTGAACAATCTGTTAAATGATCACATTTTTTAAAGCCTTGCAATTATGAAAATGATACCGTGGTCAGTCTTCTA ACCTTTTGTTCATTAATGACTTGCCACTCACACGCGCCCAAAAGTTTCCTGCTGGGTGGGTGTGTTTCATTATTTTCCCC TGAAAACAATAAATAACCCTTGATTATTTATCACACTTCATTCCACAGCCTTAAAAGAAAGGATAATTTTTTAGTATAAT GCAGATATTGTTGCTGTCTATTTTTTCATGTACCTGTCGCACATTCCACTATGAAACTAAAGCTGTTTTTCATTTTCAAG GATATCTTTTAAAAGCTGGCTTTTGCAACTAAAATGATTCAGTATTTTCTATTTTAGGTTGACAAAAATGATCCCAATGC AACAAAAACATTGAGCAGGCTGGTAGCTATACAGAAAACTTGCAGAGAATCTGGACTCCTAAATAAAAGGTATAAACAAA TCCGAGCACCTTTAAGTTTTTGTTTTTGTTTTAATCATTGTTAGTCTAAAAATTCGTTAATTGATTTAAGCAGGAAATCT TACATTCTGAGGAAAGAGAACGGATATGGCTCAACACTGGTACGTTTTTGCCTTTTCAATTTTTAAATCCATCCCACATT TCTAGAATATACACTGATTTAAAGTATCCCTGCAGATTATCATACTGGTCCTCTTGTTTTCCATCATGTTTGCTTATAAC TCTGCTACCCGCCATAGTAACTAGTGTAAGTTCCATTGTTAAATTTATTGCACCGTTTATCATTTGTAAGAAGCCAAAAA AATCACGTTACCCTTTCAGAGAAAATTGCTATGTTTCTTGCTTTTTCAAAAGTGGATGTCACTGAAACATTGATAGCATG CCTCCTTCCGTGGAATGTGGTTTTACATGCTGGCCTGCAATATTTTGAAGGATGCAGTTGACTATCATTCATGTATTCTA TTTGTAAAATAATGGTTGAATATATAGTATAGTACCTTTAGCTTCATGTGTATTCAAATTTACCAGTGTTCATCCAGGAA ATTATCATTGAGTGTCGTTTGATATATACACTGATGAAGTTGTAATTCCAAAATGATTCCATTGTAATGCCAGAACGCTG GAGCTACAAACATGGTCACAAAATTCAAGCTTTACGCATGCTTTTTTGTTGTTGTCAAAGCTTGACGCATGCTTAAATTC ATAAGTAATATAGCGTGGGTATATAGGAGTATTTTTGAACTCTTTACGTTTACGTACATCATATTTTTAAGATTCATTTA ACACCTCAAAAAAAT
CDS sequence (LotjaGi3g1v0513800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGTTTGGGAGCGATTGTGAAGCATCCAGATGATTTGTACCCGCTGCTGAAGCTCAAAATGGCGGCGAGGCACGC CGAGAAGCAGATCCCTTCGGAGCCGCATTGGGGCTTCTGCTACTCCATGCTCCACAAGGTTTCTAGAAGCTTCGCCCTCG TCATTCAGCAACTCGACACTGATCTTCGCAACGCCGTTTGCATATTCTACTTGGTTCTTCGAGCTCTGGATACCGTTGAG GATGATACGAGCATAGCTACAGAAGTAAAGGTCCCCATACTGAAAGCTTTTCACCGTCACATCTATGATCGTGATTGGCA CTTCTCATGTGGCACAAAGGAGTACAAAGTTCTCATGGACCAGTTTCATCTTGTTTCAACTGCTTTTCTGGAACTTGCAA AGAACTATCAGGAAGCAATTGAAGACATTACTGACAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAA ACAATTGATGACTACGACGAATATTGTCACTATGTGGCAGGACTTGTTGGGCTGGGTTTATCAAAGCTTTTCCATGCCTC TGGTAAAGAAAATCTGGCAGCGGATTCCCTTTCCAATTCAATGGGTTTGTTTCTTCAGAAAACAAACATTATTCGAGATT ATCTGGAAGACATAAACGAGATCCCCAAATCACGCATGTTTTGGCCACGGCAGATCTGGAGTAAATATGTTAACAAACTT GAGGACTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGTCTAAACGACATGGTCACTAATGCTCTGATGCATGC TGAAGATTGCTTAAAGTACATGTCTGATTTACGAGACGATTCTATATTTCGCTTTTGTGCTATTCCCCAGATAATGGCAA TTGGAACACTTGCAATATGCTACAACAACGTTGAGGTCTTCAGAGGTGTAGTGAAAATGAGGCGAGGTCTAACTGCCAAA GTGATTGATCGGACAAAGACCATTGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCTATGTTGGAGTCCAAGGTTGA CAAAAATGATCCCAATGCAACAAAAACATTGAGCAGGCTGGTAGCTATACAGAAAACTTGCAGAGAATCTGGACTCCTAA ATAAAAGGAAATCTTACATTCTGAGGAAAGAGAACGGATATGGCTCAACACTGATTATCATACTGGTCCTCTTGTTTTCC ATCATGTTTGCTTATAACTCTGCTACCCGCCATAGTAACTAG
Protein sequence (LotjaGi3g1v0513800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLGAIVKHPDDLYPLLKLKMAARHAEKQIPSEPHWGFCYSMLHKVSRSFALVIQQLDTDLRNAVCIFYLVLRALDTVE DDTSIATEVKVPILKAFHRHIYDRDWHFSCGTKEYKVLMDQFHLVSTAFLELAKNYQEAIEDITDRMGAGMAKFICKEVE TIDDYDEYCHYVAGLVGLGLSKLFHASGKENLAADSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKL EDLKYEENSVKAVQCLNDMVTNALMHAEDCLKYMSDLRDDSIFRFCAIPQIMAIGTLAICYNNVEVFRGVVKMRRGLTAK VIDRTKTIADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSYILRKENGYGSTLIIILVLLFS IMFAYNSATRHSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 4.3E-239 | – | |
| PANTHER | 1 | 409 | 409 | 4.3E-239 | – | |
| Phobius | 1 | 281 | 281 | - | – | |
| Gene3D | 27 | 367 | 341 | 2.0E-134 | ||
| TIGRFAM | 36 | 367 | 332 | 1.2E-158 | ||
| SUPERFAMILY | 37 | 367 | 331 | 1.87E-85 | ||
| SFLD | 37 | 325 | 289 | 0.0 | – | |
| SFLD | 37 | 325 | 289 | 0.0 | ||
| CDD | 38 | 320 | 283 | 5.38679E-93 | ||
| Pfam | 45 | 315 | 271 | 1.8E-45 | – | |
| ProSitePatterns | 168 | 183 | 16 | - | ||
| ProSitePatterns | 201 | 229 | 29 | - | ||
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 282 | 304 | 23 | - | – | |
| Phobius | 305 | 384 | 80 | - | – | |
| Phobius | 385 | 405 | 21 | - | – | |
| TMHMM | 386 | 405 | 20 | - | – | |
| Phobius | 406 | 413 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of LotjaGi3g1v0513800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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