Domain Predictions — View

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TIGR01559

Source: TIGRFAM

Description

squal_synth: farnesyl-diphosphate farnesyltransferase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008610 View details of GO:0008610 AmiGO InterPro QuickGO	Biological process	Lipid biosynthetic process	The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.	Subterm of GO:0006629 GO:1901576
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v3386550.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Squalene synthase [Lotus japonicus] gi\|28208268\|dbj\|BAC56854.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.600.10 IPR002060 IPR006449 IPR008949 IPR019845 IPR033904 NON_CYTOPLASMIC_DOMAIN PF00494 PS01044 PS01045 PTHR11626 PTHR11626:SF2 SSF48576 TIGR01559 TMhelix TRANSMEMBRANE cd00683	18
Lj3g3v3386560.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Squalene synthase [Lotus japonicus] gi\|28208268\|dbj\|BAC56854.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.600.10 IPR002060 IPR006449 IPR008949 IPR019845 IPR033904 NON_CYTOPLASMIC_DOMAIN PF00494 PS01044 PS01045 PTHR11626 PTHR11626:SF2 SSF48576 TIGR01559 TMhelix TRANSMEMBRANE cd00683	18
LotjaGi3g1v0513800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp\|P53800\|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr\|Q84LE3\|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.600.10 IPR002060 IPR006449 IPR008949 IPR019845 IPR033904 NON_CYTOPLASMIC_DOMAIN PF00494 PS01044 PS01045 PTHR11626 PTHR11626:SF5 SFLDG01018 SFLDS00005 SSF48576 TIGR01559 TMhelix TRANSMEMBRANE cd00683	20
LotjaGi3g1v0513800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp\|P53800\|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr\|Q84LE3\|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.600.10 IPR002060 IPR006449 IPR008949 IPR019845 IPR033904 NON_CYTOPLASMIC_DOMAIN PF00494 PS01044 PS01045 PTHR11626 PTHR11626:SF5 SFLDG01018 SFLDS00005 SSF48576 TIGR01559 TMhelix TRANSMEMBRANE cd00683	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00683	CDD	1	25.00