Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0043300.5

Overview

Field Value
Gene ID LotjaGi4g1v0043300
Transcript ID LotjaGi4g1v0043300.5
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|I1KL88|I1KL88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0043300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:5119257..5122978) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATTATCAGTATTTGCTGGGAGGTATATTGGCTTGTTACGCTTGTAGTTTGGCCTTTTTGTTTGTTCTGTACAGTTT TGCAGCAAAGAGGAATGCCACAAGTTCAAGTTTATTACATTTAAAGAGTAATGGGAGTGCAAAGACATCAGAAAATGGAA TATGCCAACAAAAGGGTGAAGGAAGTATAGATGTCATCATTGTTGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACA CTTGGAAAGGTATGAGGTTTTTTTTTTCTTCCTAAAATTTATTCAGGTTTTCTGGTTTTAAAAATAGTAGTAATGAATGA AAAGAATCTTAAAGTAGATGAATGAAAACAAGAGTAAATTTTATGTGAAGTAAAGTTGTCATGAGTTTATTTAAGTTTGG TTGCAGTAATACTAATATTTGTAGATATTATTGATGAACATTTGTTCAACTTATATAATGGTCATATCTTCTTTTCCTTT CCATTTTCCCAGCAATCAGAGACAGAGAGAATAAAACTCTGAAAAGTTTTATATTTCTTCCTTTTCATGATTTGCTCTTA GAGTCAATGGACTGGAATAGGGTCATCAGAAAGTACTAATGTCATTAGTTAATTAATTAAGCAGATTCAAATTTGTGGTT AAAAGGTCAATTTTTCTTGGTATTGTTCTGCACTAGTTGCAAACTTGGTGAGAGATGACTTCAAAAATAAGCTTGATTTC TAGAAGAGATGTTTTGGAAAGCCCTCTTAATTTTTGCATGAATGAATCATATGTTTGTATTAAATTAACCCGTTTAATTG CGGCCGCAACATAAAGGGATTTTAGGTCCCCAAAAAAGCATCGTGACAACAATTGCACCCGTTTCGATCCACATTTGCCT ACAATTCTAAAATGCAGCCGCAGCTGCTAACGCGACTGCAACTACAATTTAAAACCCTTGAGAATGCTAATTAAGTGATC TTACTTTGTGCTTCTTTGTTGCAGGATGGAAGGCGAGTGCATGTGATTGAAAGGGACTTGAGTGAACCTGATAGGATTGT GGGTGAATTGTTACAACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTTGAGGGTAAGTAAGAAACTTATCAAGATA TGAAAATTTTGTGTGAATTTGATAGATAAATGATTCTGTTACTATTGAAGTATGAACAACTCCCCTAACTTTGCTGATCA AAATCATGGTTCTTAACAAATGAATATTCTGAACCATTTCAGATTGTGTGGATGAAATTGATGCTCAAAAAGTCTTTGGC TATGCTCTTTATAAGGATGGTAAAGATACCAAGTTGTCTTACCCCTTGGAAAAATTTCATTCTGATGTTTCTGGGAGAAG CTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCTAAAGTACACAATTTTACCTTATTGTC TTTTTCATTAAAAAGAACGAAAATAGTTTGTCGACATCCGCATATTGCGGACACCTTGCAAATAACCAGCGTGAGGAAGG AAGAGAAGAGAGAAGTAATGAATATGTCTGGGTTTCAAATTACGTGTGGTTCACAACGTAACGGGTTTTGGAGTTCCCGT ATCAGCATTTCAGAGCGATAGAGAGAAAAATGAGATATCTATGGAGTTGTTTGATAGTTTAGTTATGTGAGGTTTATAGT TTGCACTCAAGTTATGTCCCCTTATAGTATCATCCTAATTTTTTGCAGTGTAAACTTAGAACAAGGAACTGTTACATCTC TACTTGAAGAGAATGGAACCATTACAGGGGTGCACTACAAAACCAAGAGTGGACAAGAGCTAATAGCAAAGGCTCCCCTC ACCGTTGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCTAAGGTAAGGATGCTAGGTTCCTTTTC CAGTTATATGATAATGTATTAACATGGTTCAAGGTTTTCTATTTTTAATTTCTCAGCTTCCATGTAAAATGGATTTACAT GTTCAAATTTATAGTCAAGAAAGCATAGAATGTTAAATGTTGTTTGATAAATGTCACTATATATATCTGCAGGTTGAAGT ACCCTCTCATTTTGTTGGCCTAGTCTTAGAGAACTGTAATCTTCCATATGCAAATCATGGACATGTTATCTTGGGTGATC CTTCACCCATTTTATTCTATCCCATCAGTAGCACTGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAAAATTACCGTCC CTTGGTAATGGTGAAATGGCCCTCTATTTGAAAACTGTGGTAGCTCCCCAGGTACAAATCTAATCTTTTTCTTGGCTTAA CAACTAGTTAGCGTATCAGCTTTCAGCTTTCAGCTAACTTATTATTTAGGTCTTGTCAAACAAACTCCAAGTCTTTCGAA ATAATGGGCAATCTACATATTTAAGCTAGATAATATTTTTAAATTTTGTTGATTAGTTTCTGTTTTATATTCATTCTACT AATTGTGGAAATTGTATCTTTCAGGTTCCCCCAGAGCTGTATACTTCTTTTGTAGCTGCAGTTGATAAAGGAAACATGAG AACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCTACACCCGGTGCCCTTCTGATGGGAGACGCCTTCAATATGC GCCACCCGTTAACCGGAGGAGGAATGACCGTGGCTTTGGCTGATATTGTTGTGCTCAGGAATCTACTGAGACCTCTGCGT GATCTGCGTGATGCTTCTTCTCTTTGCAAATACCTTGAATCATTCTACACCCTGCGCAAGGTATGTAAGTAACAAATATA ATTTTGAGCGAGTGAAGAATGGAGCCTGAAATATTTTGGCGCTAGAAAGTTAGTTCCCGAAAGAAGTAAATACGTTTGTA AGTCGCTGAATATGTAAAATGTCGGTCAAGTTAGTCCCTTAATCGCCATTTTAGTTTACCAAATCTGTCCATAGGGACTA CATTGACAGAAGTATTCACATTTAGGAACTCCCAAACGTATTTCCTTCTACCAGACACTTACTTGCCGTCAAACTTTCAG GAAAAATAGACCAGTCACTCAATTTTGAGCAATCTACTATTTTAACCATTTAGGGTGAATGATTAGGTTATAGTAACTTC AATGCTTAACCAAATTAGTGGAAAAAGGAAGAAAAACTTAGTGCATTGCCTGATTCTATTTGTAGCCAGTGGCATCTACA ATAAACACATTAGCTGGGGCATTGTACAAGGTGTTTTGTGCATCTCCTGATCCTGCTATGAAGGAAATGAGACAAGCATG TTTTGATTATTTGAGCCTTGGAAGTGTTTTCTCAGAGGGACCAACAGCTCTGCTCTCTGGTCTAAATCCTCGTCCACTGA GCTTAGTTCTCCATTTCTTCGCGGTGGCTATATATGGCGTTGGCCGACTTATGATACCATTTCCTTCTCCAAAACGGATA TGGATTGGAGCTAGATTGATTTCAGTGAGTGTTTCTCATATTCATTTTTGCTTTAAAAGAATCATTTTTGTCACATTCTC ATCAAATACAAAAAGCTTCAACAAATTTTGATTTTGAATCAATTTTTTCTTTCTGATATTCCAGGGTGCAGCAGGTATCA TTTTCCCCATTATCAAGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTGCCTCCT GTCTATTAAGCATATTACAAGAAAGGCATGGAACATGTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0043300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTGGAAAGCCCTCTTAATTTTTGATGGAAGGCGAGTGCATGTGATTGAAAGGGACTTGAGTGAACCTGATAGGAT TGTGGGTGAATTGTTACAACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATG CTCAAAAAGTCTTTGGCTATGCTCTTTATAAGGATGGTAAAGATACCAAGTTGTCTTACCCCTTGGAAAAATTTCATTCT GATGTTTCTGGGAGAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCTAAATGTAAA CTTAGAACAAGGAACTGTTACATCTCTACTTGAAGAGAATGGAACCATTACAGGGGTGCACTACAAAACCAAGAGTGGAC AAGAGCTAATAGCAAAGGCTCCCCTCACCGTTGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCT AAGGTTGAAGTACCCTCTCATTTTGTTGGCCTAGTCTTAGAGAACTGTAATCTTCCATATGCAAATCATGGACATGTTAT CTTGGGTGATCCTTCACCCATTTTATTCTATCCCATCAGTAGCACTGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAA AATTACCGTCCCTTGGTAATGGTGAAATGGCCCTCTATTTGAAAACTGTGGTAGCTCCCCAGGTTCCCCCAGAGCTGTAT ACTTCTTTTGTAGCTGCAGTTGATAAAGGAAACATGAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCTAC ACCCGGTGCCCTTCTGATGGGAGACGCCTTCAATATGCGCCACCCGTTAACCGGAGGAGGAATGACCGTGGCTTTGGCTG ATATTGTTGTGCTCAGGAATCTACTGAGACCTCTGCGTGATCTGCGTGATGCTTCTTCTCTTTGCAAATACCTTGAATCA TTCTACACCCTGCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTGTACAAGGTGTTTTGTGCATCTCC TGATCCTGCTATGAAGGAAATGAGACAAGCATGTTTTGATTATTTGAGCCTTGGAAGTGTTTTCTCAGAGGGACCAACAG CTCTGCTCTCTGGTCTAAATCCTCGTCCACTGAGCTTAGTTCTCCATTTCTTCGCGGTGGCTATATATGGCGTTGGCCGA CTTATGATACCATTTCCTTCTCCAAAACGGATATGGATTGGAGCTAGATTGATTTCAGGTGCAGCAGGTATCATTTTCCC CATTATCAAGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTGCCTCCTGTCTATT AA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0043300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFWKALLIFDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQKVFGYALYKDGKDTKLSYPLEKFHS DVSGRSFHNGRFIQRMREKASSLLNVNLEQGTVTSLLEENGTITGVHYKTKSGQELIAKAPLTVVCDGCFSNLRRSLCNP KVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMALYLKTVVAPQVPPELY TSFVAAVDKGNMRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLRDASSLCKYLES FYTLRKPVASTINTLAGALYKVFCASPDPAMKEMRQACFDYLSLGSVFSEGPTALLSGLNPRPLSLVLHFFAVAIYGVGR LMIPFPSPKRIWIGARLISGAAGIIFPIIKAEGVRQMFFPAMVPAYYRVPPVY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 282 282 - –
PANTHER
PTHR10835
9 452 444 1.1E-295
IPR040125
PANTHER
PTHR10835:SF5
9 452 444 1.1E-295 –
SUPERFAMILY
SSF51905
10 364 355 1.24E-35
IPR036188
Gene3D
G3DSA:3.50.50.60
10 328 319 1.3E-31
IPR036188
Gene3D
G3DSA:3.30.9.50
31 255 225 1.3E-31 –
Pfam
PF08491
139 412 274 5.4E-119
IPR013698
Phobius
TRANSMEMBRANE
283 302 20 - –
Phobius
CYTOPLASMIC_DOMAIN
303 385 83 - –
Phobius
TRANSMEMBRANE
386 405 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
406 410 5 - –
Phobius
TRANSMEMBRANE
411 429 19 - –
Phobius
CYTOPLASMIC_DOMAIN
430 453 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004506
Molecular function Squalene monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+).
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016126
Biological process Sterol biosynthetic process The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0043300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…