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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0068200 |
| Transcript ID | LotjaGi4g1v0068200.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8553638..8556803) extracted from Lotus japonicus Gifu genome v1.2.
TGTCCGTTCCCCATTTGCGTCTCCCTCACATCGCAAACATACAAACAACACTCTCCTCTCTGTCTCCCTCTCTTCCTCCA TTCTCTCAACCCTTTCACTCTCATTCAATCCCTCACATCTCTCTGTTTCTCCTCTCATCATCATCAACCCTAAACCCCTT TTGTAACAGAATCAATCCAACACCACCAGAACCAGAAGAAGAAGAAGAAGAAGAAGCATCATCAACAGAGGAAGAACCAG CAACAACAACAATGGCTCTCAGAATGAACCCTCTCCCCACACAAACCTCATCCTTCATGGCACTCCCTCAGATTGCTTCC CTCAGATCCCCCAAGTTCGTCATGGCTTCCACCCTCCGCTCTGGTTCCAAGTCAGATCCCTAACCACCTCTTTCTCTTCC CTTTTTTTCCAATTTAGGTTTCATTTCATTTCTATCTCACATCACACATTCACTCGCATCTTCAATTCCATTCTCAATCT TTGATCTGAGTTTTTCACTATTCTCATTGTTTTCTCCGCACACCTTCAATTTTTATTTTTATTTTTATTTTAATTTAATT GATTTTGGGTTTTGTGATGCATGGAATCAGAGCTGAAAACAGCGAAAGCGACTCGCGATTTTCCTGTGTTTGTCTTGAAA TTGACATGATTTTGAGATATTTTGATGTGTTCAATTAATGTTTTTTGGCCCGCATTTCTGGTTTGGTATTGTGATGGTTG AGGTGGTTCGATTTGCATTCAAGCTTCTTCCTTTGCTTCTTGTTGTTTATTTTTGGCTTGCATGTCTTTTTCTTGTTCTG GTTGGTGAGGATTTAGGATGGTTTGTTTGGTTTAGATATTTATGATTGATTATGCAGATAACACGAGGCTGGAACGTGTT TGTGTCACCATAATATTTAACAATTTCACTTTCCTTTTCTCAAATTTTCTCTATATTCTTAACAAGCTCACCTAAATTTT GGCCCCCACTTTGAGTTTGTTTTTAAAATAATTTATAAGTTCTTTTGGTTGATGGTTTGGTATTCCTTGGTGGCTTTAAT CTTCATTCATTGTTGAAATTCTTCTTTTTCTTCCTTAGCTCCAACCTGAGTGTATGTATAGTAAACTTATCCATTTCTTC CTTAATTGTTAACAGGAACTTTCTGGGTTTTCTGGGTTTTGAAGTCCTTTTACTTGATTTGATATGCAGTCTTTGCTTCT TTGTCTGTAATCTATGCAAATATGATTTTGATGAATATTACTAACTTGCTATCATGGTTTTGAATTGGATGCTTGAAATC CGGGACAAGTGCGGCTGATCAATTGTGGTCCCATTGAGGTTGCAGAGACTTGTAAAAACCTTGATATTGGGGCTGCAATT GTGATTGCAGATCGCAATTTTAATCCATACTTGCTATTTCTTATGAGCATCTTTTTGGAGTTGATACAATTTGTTGCATA AAAATGGGTGTATTAAAATTGGTTTGTTGTTTGCTGGGTTTTTCTGGTGAGTTGAGTGACATAGGCATGATTTAGGCTGC TGCACAGAGCTGTATGTTCTGTAAAGTTGTCCTTTTTTTGCTTTTGTCTGTGCTATTTGCGTTAATGTAAGTGTATGACA TCTTGGGTTCATGAACAATACGGTTTACACTAAAAATCAGTTTTACCAGTTCATGATCATTCCAAATGGTGGTGTTGTGT TATTGCTCTGAAAGTCAGTTGAATTTCTTTTGCAGAGAGGTAGAAAGCATCAAGAAGCCTTTTACGCCTCCCAGAGAAGT GCATGTTCAAGTAACCCACTCTATGCCACCACAGAAGATTGAGATTTTCAAATCTCTTGAGGGTTGGGCTGAGGAGAACA TCTTGGTTCACCTTAAACCGGTAGAAAAATGCTGGCAACCACAGGATTTTCTACCTGATGCTTCCGCTGATGGATTTGAA GAGCAAGTGAGGGAACTGAGAGAGAGAGCAAAGGAGATTCCAGATGATTACTTTGTTGTTCTGGTTGGGGACATGATCAC GGAAGAAGCCCTTCCTACTTACCAAACAATGCTTAACACTTTGGACGGCGTTCGTGATGAAACAGGGGCCAGCCCTACTC CGTGGGGAGTTTGGACAAGGGCATGGACTGCTGAAGAAAATAGACACGGTGATCTGCTTAACAAATATCTTTACTTGTGT GGACGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGGTCTGGAATGGTAAGTCCCTATATATCTAT TCATGATCTTAATTTTCAGCTATTGTAGTTAGTTTCATAATGATTCACACAATCATGCAAATTTCAAAGGCACTTGTATT TAGATATTACAGTCAATATAATCCAGAGACCCTTCATGGTTAATTTGGATTGGGGTGGGTGGTGCAGAAAATGCACATTT TATAGACTAATGCATTCAGATGCATTAATATGTCCGTATCAGCAAAACTCATGTACACGTGGGTGATGTCTTGAAACTAT TGAAGGATCTGCTTGGAGGGAATTTCAAGATTGAGATCCTACTTTTCTTGAAGTTTTATACTTGATTGTTGTTCTGTTTA ATTTTATTTATTTTTTCCTTTTTAACTGATCGAAATTGATTGTAGGATCCTCGAACTGAGAACAGCCCCTACCTTGGTTT CATCTACACTTCATTTCAAGAGAGGGCGACCTTTATTTCCCACGGAAACACGGCCAGGCATGCTAAGGAGCATGGTGATA TAAAGCTGGCTCAGATCTGTGGTCTGATCGCCGCTGATGAGAAACGCCACGAGACCGCCTACACCAAGATTGTGGAAAAG CTGTTTGAGATTGATCCTGATGGAACAGTCATGGCATTTGCTGACATGATGAAGAAGAAAATTGCTATGCCAGCACACCT GATGTACGATGGCCGAGATGATAACCTGTTTGACAACTACTCTTCCGTAGCCCAGCGTATCGGGGTCTACACTGCCAGGG ACTACGCTGATATACTCGAGTTTCTAGTCGGGAGGTGGAAGGTGGAGCAGATAACTGGACTGTCAGGCGAGGGACGGAAG GCTCAGGAGTACGTTTGTGGGCTGCCACCAAGAATCCGAAGGCTGGAGGAGAGAGCTGCAGCAAGAGTGAAGGAAACATC AACAATTCCATTCAGCTGGATTCATGACAGGGAAGTACTACTCTGA
CDS sequence (LotjaGi4g1v0068200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCAGAATGAACCCTCTCCCCACACAAACCTCATCCTTCATGGCACTCCCTCAGATTGCTTCCCTCAGATCCCC CAAGTTCGTCATGGCTTCCACCCTCCGCTCTGATAACACGAGAGAGGTAGAAAGCATCAAGAAGCCTTTTACGCCTCCCA GAGAAGTGCATGTTCAAGTAACCCACTCTATGCCACCACAGAAGATTGAGATTTTCAAATCTCTTGAGGGTTGGGCTGAG GAGAACATCTTGGTTCACCTTAAACCGGTAGAAAAATGCTGGCAACCACAGGATTTTCTACCTGATGCTTCCGCTGATGG ATTTGAAGAGCAAGTGAGGGAACTGAGAGAGAGAGCAAAGGAGATTCCAGATGATTACTTTGTTGTTCTGGTTGGGGACA TGATCACGGAAGAAGCCCTTCCTACTTACCAAACAATGCTTAACACTTTGGACGGCGTTCGTGATGAAACAGGGGCCAGC CCTACTCCGTGGGGAGTTTGGACAAGGGCATGGACTGCTGAAGAAAATAGACACGGTGATCTGCTTAACAAATATCTTTA CTTGTGTGGACGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGGTCTGGAATGGATCCTCGAACTG AGAACAGCCCCTACCTTGGTTTCATCTACACTTCATTTCAAGAGAGGGCGACCTTTATTTCCCACGGAAACACGGCCAGG CATGCTAAGGAGCATGGTGATATAAAGCTGGCTCAGATCTGTGGTCTGATCGCCGCTGATGAGAAACGCCACGAGACCGC CTACACCAAGATTGTGGAAAAGCTGTTTGAGATTGATCCTGATGGAACAGTCATGGCATTTGCTGACATGATGAAGAAGA AAATTGCTATGCCAGCACACCTGATGTACGATGGCCGAGATGATAACCTGTTTGACAACTACTCTTCCGTAGCCCAGCGT ATCGGGGTCTACACTGCCAGGGACTACGCTGATATACTCGAGTTTCTAGTCGGGAGGTGGAAGGTGGAGCAGATAACTGG ACTGTCAGGCGAGGGACGGAAGGCTCAGGAGTACGTTTGTGGGCTGCCACCAAGAATCCGAAGGCTGGAGGAGAGAGCTG CAGCAAGAGTGAAGGAAACATCAACAATTCCATTCAGCTGGATTCATGACAGGGAAGTACTACTCTGA
Protein sequence (LotjaGi4g1v0068200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRMNPLPTQTSSFMALPQIASLRSPKFVMASTLRSDNTREVESIKKPFTPPREVHVQVTHSMPPQKIEIFKSLEGWAE ENILVHLKPVEKCWQPQDFLPDASADGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS PTPWGVWTRAWTAEENRHGDLLNKYLYLCGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTAR HAKEHGDIKLAQICGLIAADEKRHETAYTKIVEKLFEIDPDGTVMAFADMMKKKIAMPAHLMYDGRDDNLFDNYSSVAQR IGVYTARDYADILEFLVGRWKVEQITGLSGEGRKAQEYVCGLPPRIRRLEERAAARVKETSTIPFSWIHDREVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 394 | 394 | 1.3E-238 | – | |
| PANTHER | 1 | 394 | 394 | 1.3E-238 | ||
| Phobius | 13 | 24 | 12 | - | – | |
| PIRSF | 20 | 395 | 376 | 2.1E-186 | ||
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 395 | 363 | - | – | |
| Gene3D | 50 | 395 | 346 | 2.0E-182 | ||
| SUPERFAMILY | 53 | 394 | 342 | 7.67E-131 | ||
| CDD | 67 | 373 | 307 | 0.0 | ||
| Pfam | 68 | 389 | 322 | 4.3E-159 | ||
| ProSitePatterns | 315 | 334 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Fatty acid metabolic process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Acyl-[acyl-carrier-protein] desaturase activity | Catalysis of the reaction: stearoyl-[acyl-carrier protein] + reduced acceptor + O2 = oleoyl-[acyl-carrier protein] + acceptor + H2O. The enzyme requires ferredoxin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0068200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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