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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085100 |
| Transcript ID | LotjaGi4g1v0085100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11217131..11218096) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGA GTTCAGCGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACT GTGATGGCCACACCTTCAATTACCTCGTCGATAACGGCTACAGTTAGTTCCTCCTCCGATCTATGCGAATCGGTCTTCTC AAACATGATTTCATCATCAAAACCAATAATCAATTCACTAGTAGTATTAGCATATGCATGATTTTATGTTAAGACTGTTG TTTATTGAAATTCATGATTTGTTATATGTATAGGGTTAGTGGTAGGTGGTGATTTTGTTTAGAAATTGATTGATGGCTCA TGCTCGGTGTGTTTGTGTTGTGTTTGTAGCGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCTGTGGCTT TTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAGCCTGAAC AAGGAATTTGGGTATTTGTTTGAGTTTGTGTTGAGATTAGCTTAATTGTGATTGTGTTCGTGATTGTGAATGATCTTTGC TTTGTGCAGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGGCAAAGGTGA AAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTAACAGATACTCGGCTTATTCTGCTTTGA CTTGAGAGGATCATGATATTTTTTGATCAGATTGAATTGATTTATAATTGTAGAATGTAGATCACAAGAATAAGAGGTTG TAATAGAAATTATGAAATGATTGTTTTTAACTGTTATGAAAATAAAAACAACAGAGGCCACTGAACACAAAGGGTGGATT TTTTAG
CDS sequence (LotjaGi4g1v0085100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACACGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCT GTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAG CCTGAACAAGGAATTTGGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGAATGTAGATCACAAGAATAAG AGGTTGTAA
Protein sequence (LotjaGi4g1v0085100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQNQRSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVP VAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKNVDHKNK RL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 129 | 128 | 1.8E-45 | – | |
| PANTHER | 4 | 159 | 156 | 7.4E-103 | – | |
| PANTHER | 4 | 159 | 156 | 7.4E-103 | – | |
| SUPERFAMILY | 8 | 123 | 116 | 8.85E-29 | ||
| CDD | 9 | 123 | 115 | 3.18141E-36 | – | |
| ProSiteProfiles | 12 | 116 | 105 | 28.435 | ||
| SMART | 33 | 115 | 83 | 3.7E-28 | ||
| Pfam | 36 | 113 | 78 | 2.6E-25 | ||
| SUPERFAMILY | 127 | 157 | 31 | 3.14E-5 | – | |
| Gene3D | 130 | 161 | 32 | 1.2E-5 | – | |
| CDD | 132 | 153 | 22 | 2.44109E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0085100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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