Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0085100.5

Overview

Field Value
Gene ID LotjaGi4g1v0085100
Transcript ID LotjaGi4g1v0085100.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:11217137..11220939) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACAGTTAGTTCCTCCTCCGATCTATGCGAATCGGTCTTCTCAAACAT GATTTCATCATCAAAACCAATAATCAATTCACTAGTAGTATTAGCATATGCATGATTTTATGTTAAGACTGTTGTTTATT GAAATTCATGATTTGTTATATGTATAGGGTTAGTGGTAGGTGGTGATTTTGTTTAGAAATTGATTGATGGCTCATGCTCG GTGTGTTTGTGTTGTGTTTGTAGCGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCTGTGGCTTTTCTGG AGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAGCCTGAACAAGGAA TTTGGGTATTTGTTTGAGTTTGTGTTGAGATTAGCTTAATTGTGATTGTGTTCGTGATTGTGAATGATCTTTGCTTTGTG CAGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGGCAAAGGTGAAAGCTC AGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTAACAGATACTCGGCTTATTCTGCTTTGACTTGAG AGGATCATGATATTTTTTGATCAGATTGAATTGATTTATAATTGTAGAATGTAGATCACAAGAATAAGAGGTTGTAATAG AAATTATGAAATGATTGTTTTTAACTGTTATGAAAATAAAAACAACAGAGGCCACTGAACACAAAGGGTGGATTTTTTAG AAAACCTGAACTTGTGATTACTTATTAAATTTGTTGGGCCAGCATTTTATCAAATTTTGTGCATTGTGCACCTGCTGCGC TGAGTCTGTAATACTTGTTTGGCAGCAATTCTTTTCATGTGTTAAACGACAGATGGCTTTGAAATGTGAGATACATGCAT AATTTTATGTGTTGTGTTTAGTTGGGCGTACTTTAAGTTTTCCAGTTCTATTAGCGGGGGTAATTAGGGTTTGTTGAGTT CTTGTAACCCTACAGAGACCCTGAAAATCGAATTAAGATTTGTGCTACCTCCCTTGGACCGTCGATGAGGCTCCACCAGC CACCAATGAGCCTCTGATTCTCGCCTCCTTCTTCCTCCTCCTTTTCCTCCTTCTCTGTCCTGCTTCTTCCTCCTTCCTCC TCCTCCTTCGGTGTAGCGTCCATCCTGCTTTACGCTATACTGCTAAGTGCTAAAGCGTTTTTTGGGCTTGCCGCTCCGCT CCGCTATCCGGGGTTGACAAACCTGTAATTACTGATTCAGTTCCCTACCTCTGCACCAGAGTAGAGCAGAATTGGGACAA GATGAACAATTTCTTCAGAATCACTCACAATCACTTGTATTTGAGAGACTAGCACCATAGCACTCACCTCACTAGATCTG ATTAACAACAAATGACCAACCTCCTCTCCCTCTCAACCCCTCTTCCTATTTATAGCATACGTACCTTATCTAGTGATCCA ATTACCTAACTATTATTCTATTCACTAACTGTACCTATCACTGCAAGGGAAATGAAGAAGGGGAAGAGGGATGTTGCCTG AGAATATTTATTGACTACAGATCTCAAATCAAATAAAATTATATTTCGGTGTCCACTAGCAATGTGGGGCAGGGCATTGG CAAGAACTTCCATTTAGTAGGAAGGAGCACACAAAATTTATGACTTATGATATGAGTTCACTTGGTTACCTTACTTTTAA TGCTATGCACCTAAGGGTTTTTACTTTTTATTTATTAGCTCCTATATAAGTTGATTGTGATATTTGTTTATGACTTATGG TTATGGCTATGATTTTGTTTTGTGAGACATAAGTTCCGCAGTCTATCCTAGTATGAAATTATTACATTAAGTTCTTATAA TAGGTTAATGAAACCTCTATTTGCAGTTTATTTGCTGCCAAAAAGAAAATTGCTTGTCTAACTGAAATATAGATCACATG TTACTATATGATCACTTTAAATCCAAAATGTAATGATAAAGAATATCTTATTGATATTATTCAAGATCCACATCTGACAT GCCTAATTGAATTGATTCATTAAATTGAATCAATTCAATACATTTCAAATATTAGTCAAGAATATCTCATTTGTACCAAT AGGTGCTATATTGGATTTCAGTAAGAAAAGTCAGTTCAGTTAAATTACTGTTCTTCTACCTCTGGTTTGCTGATGATACT ATTATTGTATTATCCTTTTTGAACGAGGATGACTTCTATACAAAATTTATCTATTCTTAAGTTCTTCAAGTTATCACTTA CCTAAATGAATCTGCTAATGTTAGTTTGTTTGATAACTAATACAATGTTTACTGACTTCTCATGTCTTTAGTTAATATTA GTTATTTGAAAACTAATACAATGTTTGTCTTTTTCTCTTGTTGAAATGTATCAAAATCTAAATCTTAGGGAAGTTTTGGA GGCACAGAAATTCTGCTCCTCATAATAGTTAACAATTCATCTACTGTACTTGGGTTGTAGCTGTATTTTGCTTTGAATAT GACAATTTAAGTTTACTTCTGTTTTCTCAGCTAAAAACTAAAAATAAGCCAAGATATATTTGTTGCAGTTAATTGGCCTG CAAACTAAATTTGAATATGACTATTTAAGTTTACTTCTGTTTCAAAGGAAAATTGAAACTGCGGCATTTCAGTGACATAT GAAGGAGCAAATTCTTGTCTCTCTTTTAAATGCCACAGTGAAAATTTATTATTCCATAGGTATGCTACATAAAAGCAGAG ATCAAACAAGTTAATACACATTAGAAGACATAAATGTTATTCAAGTTTTTAGCTTCTCATACATTCAATCAGATTAAGAT ATCTAATGCATAAGGACACATTCATTAAGATTGTATTGACATGTTCGTACTTCAATGTAGGTTCTGGACAGGGGGGAAAA GATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGTTAGTATTTTGTGCGCTTGAAAGTTCTTGAACTTGT GGAAGTTTTTAAATGCTTCAGGATCAGTAGTAACTATTTTTTATTTAGTTTCTTTTTTATTGGTGCATCGGAAGGATAAA TTGCACCATCCAGGGATTGATCCCTGGACCTCCCCCACCCTAACCCATATGCCCCAGCTCTTGCCACTTGAGCTATCATT CGGGGACTTTCTATTTAGTTTCTAAAACTCTTCTGATTATATTTTGTATTCTATTTAGTGTCAAAAAGCATTTCTTATGA TACTTGACACCCTATTGGAAGATCTTTCCCCCCCTTTTCACACCACTCAAAAGAAAAAGGAGGGGTTAAGATGCTAAAAA TCGTCACTTTATCGAAGCAAACTGTTTTTCACTTGTTTCCTTTTCGTCATTTTGGGCAGGCACAAGACTTCAGGAATTCT GGGACCAAAATCCGCCGAAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTGTTGGCGATATTGATAGCCCTGAT TCTCATCATAGTCCTTCCCATCGTCCTTCGTAAATGAAAATAAACCTCATTCTCAGTCATTTTATCTTGTTATTTCGACC TTATTGTGATTATGCGAGGAAAGGTATCAAATGTATGACATGA 

CDS sequence (LotjaGi4g1v0085100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACACGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCT GTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAG CCTGAACAAGGAATTTGGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGGGAAAAG ATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATCCGCCG AAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTGTTGGCGATATTGATAGCCCTGATTCTCATCATAGTCCTTC CCATCGTCCTTCGAAAGGTATCAAATGTATGA 

Protein sequence (LotjaGi4g1v0085100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGQNQRSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVP VAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEK IELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLPIVLRKVSNV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 195 195 -
Gene3D 2 130 129 4.8E-45
PANTHER 4 216 213 5.1E-140
PANTHER 4 216 213 5.1E-140
SUPERFAMILY 8 123 116 2.23E-28
CDD 9 123 115 4.87655E-36
ProSiteProfiles 12 116 105 28.435
SMART 33 115 83 3.7E-28
Pfam 36 113 78 5.4E-25
SUPERFAMILY 127 194 68 9.42E-24
Gene3D 131 216 86 3.4E-30
Pfam 131 216 86 1.4E-32
ProSiteProfiles 132 192 61 19.096
CDD 132 190 59 3.85489E-27
PRINTS 137 156 20 1.8E-20
ProSitePatterns 150 169 20 -
PRINTS 157 176 20 1.8E-20
PRINTS 193 212 20 1.8E-20
Phobius 196 217 22 -
TMHMM 196 218 23 -
Phobius 218 223 6 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0085100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…