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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0410800 |
| Transcript ID | LotjaGi4g1v0410800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TAIR: AT2G13440.1 glucose-inhibited division family A protein; Swiss-Prot: sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|I1K513|I1K513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78667464..78673378) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACGGTGTCGTTTACTCTCCATCTCTGCCGAAATTTCTGCAAAACGCTCTATCCCACTCCCGCTCGTCTGAGCCT CCGTGACGTCACATTCCGGCGAAGCTTCCGCCGCCGAGTCTCCTTCTCCAGTTCCGCTTTCTCCCGACGCTTCTCTGCCA TCGCACCAGGTTCCACCTCCCGAGGTATGAGAATGGAATGGAATTGAATTTGTTTTCGGAGACTGGAATGGAATTGTTTA CTCGTTTGAGATTTTGCAGCAGAATTGGATTGTGAAATTGGAGCACTGGATGAAAAATATGACGTGATTGTTGTTGGAGG AGGCCACGCTGGGTGTGAAGCTGCTCTTGCCTCCGCTCGTTTGGGTGCTAGAACTCTTCTTCTTACTCTCAATATTGACC GGATTGCATGGCAGGTTTCGTTGACTGACAACTCCATTCATCGTGTTTATGAACTTCACTTGTTGAATTCTTCGATGCTT GATTGAAATGAAGTTAGATGTGTTTGCAATTTCTCATGCTTTATCTTTGATTCGGTTAAGCACAATATGATGTGTGATGC TGACTGTGATGAGTTTGGTGCAGCCTTGTAATCCTGCAGTTGGTGGGCTTGGGAAGTCCCAGCTTGTTCATGAGGTAGAT GCGCTTGGTGGTGATATAGGAAAGGTTGCTGATAGGTAATGTCCAACACTCCTTCATTGCATATTCATTTCTAGTTCTAG ATTTTGAATTTGGCATTATCTTCTATGTAATTGCTTGATTAGAGTGAAGTGGTTTGGGTCCATTAAGAGAGAAGCGAGCT ACTGATTTTGAATTTGGCATTACCTTCTATTTTGGACACGGGAAGGTAATCCTTAAAGAGGGATCTTAATAATTGCAATA TGTTTGAAGATGGAGATGAATATATAATAGTTTGGTAACCTGCCATCCAAAACTAACTAGTCAAGTTGTATTGGATTCAA GTACTTGTCTAAAATACAAAATGAATACATATTCGTTCATGTTCTAATAAGTTTGGCGTGCCATCATCCTTGATTGACAG ATATTCACATATACTATTTTCCAATAAATGGGACCTTTGCGGCCACCCCTTTTTTTGAAAAGAAAAATTGTTGCCTCTAA TTGCACCTAAATTTCAGAATATGCTGAAGTAGATAAATTTTAAATACGAATTGGATATAAACAACGACCTAATAAACAGC CATTAGATCTTCTTGATTGACACTGCAAGGCTCAAATCACGCTTAAATGTAAAGAAGGTTGTTTGTGGATCATTATGCCA TTCGATAGTGATCTAGTCAGGCCCAAAAATTCATAAGATTGTCCTCGTTCTAGTGGCTGCTTTGTACAATTTAATAAATG TTATTGCCATTTTATTTTTTGCATTTTTTATTCTCTGAATACTGAATTTTTTATACACCATTTTAGATATTTATTGTTGC ATTTAGTAAAACTGCTATCGTCCGGAGATTCTTGAGTTGATTTGTTTATAAAAAACTGCATTTGTGATCTAATCTAGTTT GAAGGTGTTTTGTTGCTCATATACATATTTATGTTTGTGTTTCAGATGTTACTTACAAAAGCGTGTACTCAATGTCTCAA GAGGTCCTGCAGTTCGTGCATTACGTGCTCAGACTGACAAAAGGGAATATGCCTTGTTAATGAAAAGTATAGTAGAAAGG CAAGTTCAAGTCTTGCATGTGATGTGTGCACCTGCTCTTGTTTTTTTTTTTTTTCAATCATGTTTTGTTTTGACTTTATT TTTTGCAGCACTCCGAACCTTTCTATCCGAGAGGCTATGGTCACAGATATTTTACTGGGGAAGAATGATAATGTGGAAGG TGTTTGTACATTTTTCGGAATGAAATTCTATGCTCCATCTGTTGTTCTCACCACAGGAACCTTTATGAGTGGCAAGATTT GGGTTGGTAGAACATCTATGCCCGCAGGAAGAGCTGGCGAGTCTGCTTCACATGGATTGACTGAGAACTTGCAGCGACTT GGTTTTGAAACTGATCGGTTGAAAACTGGAACCCCAGCCCGAGTGGACATTCGCTCTGTAAATTTCTCTGAATTAGAACC TCAGCATGGAGATGAAGAGGTTCTTCCATTTAATCCTATGTGTAGGTTCATTAGATTCAATTTTGGTTCAAATCGAGTTT TTGTTTAATTGTTTGCACTTTGTAAATGGTTTCGTCTGCAGTCTGTGCGTATGTAAATGTCGGTTAGTATGCCTATAATT AAAAAGTATATATTAGGCATGTCAATGGGGCTGGGTAGGGAAATGACATATTGAATGTCATTTAGAAGATTGGGTGTTTG TTATAGTGGGGTCAGTAAACTGAAGTAGTTGGGCAGTTATTCAGTCAGCTGAGAAGTTAATAGAGGTAGAGAACCTCTCA AGTTGTTCTCTCGGTGTACAAGGCTGGTTCCTCTTGTTCCAAAGTGGTTCTAGGGTGAACACCAAAGTTCTGTGAATAAA ACTAGAATCTTTTTTATCCATTTTTTATCACCATTGTAAAAGTCTCATTGTCAATTTTCTACTTGTTAGTCTGATAGTAG TAAGATCCCACACCGCAAAAAGGCAGAAGTTCTCCATTTGGAGAATCATGTGCACAAGCCATCAGTTGGGCTAAGTTCCA AGATGTTTCTCGAGTTTATTTTCTGATTGTGTTGATTGATAATACCATTTAGCATGAGTAACTATGCAATAATTTTAGTT CCAATAGTCCCAACAAATTATGGCACAATAGATAAAATATATTTTGGCTTTCCTCCAGTCCTGTATGATAATGCCCAACT GCTTGTAGTCTGTAATGGAAAGTGTTGACCTTGTAACACAAAGATAGTGTTTCCTCATTGTATTTTCATAATTGGCAGGT TACCTGGTTTAGTTTTGATCCTGATGTCCATATTGAAAGAGAGCAGATGTGCTGCTACTTAACCCGGACTACAAGTATTA CTCACCAGATAATAAGAGAGAACTTACATGAAACTCCCACTTATGGAGGATGGGTTGAAGCCAAAGGACCTAGATACTGC CCTTCCATAGAAGATAAGGTGTGGTTCAACAATATTTTCTTGCCTTTTTTTGAGAATAAAAGTAAGCATGTTTTTTTTTT TATATTAGTTTAGTATTTACAGAATTAAGATTAGTTACTGAGTCATTCCATACGCAGCCTGAAGCAGAATGTGTAGTCCT AAACATCAGATGAACAATATTGGAATTTTTGTATTATTTTCTGATGTTATATATTGTCAATTTTAGATTGTAAGATTCCA AGATAAAGAGTCTCATCAAGTATTTCTTGAACCGGAGGGTCGGGATGTTCCGGAGCTCTATGTGCAGGTAAGTTGTATAT TCTTTTTTCTTTTCTGTAATGCGAGTGAAACTTTTCAATATTTTTTGGGTGGAGGGGGTGGGTGATATATACTAATATGG TGAAGATTCATAAAGTAAATCAGCAAACTGATACAGTTCTTGAAAAATGATAATCAGTCACTAAAGTGATTGTAACAAAT ATACGCTAGTGATGCAGTTCTCGAACTTTAAAAACATCACTGCATCTGTAGTATAAGCAAGAACCAAATTGTCATGGTTT TTTTCATTTCCTTGCTATTTTCCTGTTGGGGAAAAGTGGGGTTTCATGGCTTATACCTTTTAATCTTGAAAGGATGTCTT ACCTCTAGCTCTATACTCTTCTTTTCTTCTTTAATGATTATTTTAGTAGTCAGCTTACCATAGAATCCCAACCACAAAAA AATGGCAATGTGCATGATTGAACCTTTCTATCTTATAGGGGTTCTCAACTGGTTTGCCAGAGAGACTACAGCTACCTTTG CTAAGAACTTTGCCTGGACTTGAGAACTGTTCAATGTTGAGGCCTGCATATGCCGTGGAGTATGACTATTTACCTGCTCA TCAATGTAATAGGTCTCTTATGACAAAGAAAATACAAGGATTGTTCTTCTCTGGTCAGATAAATGGAACTACAGGCTATG AAGAAGCTGCAGCGCAGGTATTCCTTTTAAGTTCGTTTGTGCTTATAAATATAATATTGTATGTGTTACTAGTTGTATCA CAGAGATTAGTAAAACTCTTATTGGATGTTTTGGGCTTTTGGCTTCCTGCTATTCTAGCAAGCTTTATTCTCACAATTTA GTATTTTTCTTCCTTCAGGGCATTGTTTCTGGTATCAATGCTGCTAGACATGCAGATGGTAAACCACTCATTATTCTTGA GAGGGAGAGCAGTTATATTGGAACATTACTTGATGATCTAGCTACCAAGGACCTACGAGAGCCTTACCGCATGTTAACAA GGTATGCTATTGCTAACCAAGACTACATTTCTATTGATAGATGCATATATGCTGCTTCATCCATTCCATTTATTATTTCT TGACAATTGCAACTTAAAATGTTTGTCTTCTCTTAGCCGCTCAGAGCATCGGTTACTCTTGAGATCTGATAATGCTGATA GCCGTCTCACTCCTTTGGGTCGTGAAATTGGATTGATAGATGATAGACGCTGGAAACTGTACCAGGAGAAGCAGGCCCGG ATTTCTGAGGAAAAGAAGCGGTTAAAAAGTGTCAGGATTTCAGGTGTGTTTGTCTGCTATGCATATGTGGTAACTCGTAA CTCTTTCTTGGGAGCTGTTAGTTTAAAAGGGACTAGAAGTTTATTCTTTGGGAAAATCAAGCTGTTGCTTCGAGTCAAAG GCAATTGTTGGACTTGCTTTTGTTGTCAAATCCAATTGTTTTAACCTGTGTTGTAAAATTTGAACTCATCAAATCTTCCG AATCTTCTGTGCATTTTATGTAGTCTGGCAGACAATCCACTCTAGTTTTAAGTAGAAAGTTTACTTATTTGTGATTGCTA AAATCCATTCTCTTAGCAAAATGTTTGTCTTTTTCCCTTTTAATCTAGTTGGATTAAAAGCTTATTGTTTGATTTCTTAT TGATCAACCCTACTCTCCTTACTTTTCTCGTCAGGAGGGGATTTGGCTGCTGAAGTTACTGATCTGTCTGGTCAGCCAGT GAAAGTCTCTTCAACATTGGAAAGTCTTCTTAAGAAACCACACATACAATATAGAACTCTTGATAACCATGGTTTTGGCA ACAAAAACTTGACAAGAATGGAGAAAGAATGTGTTGAGGTCGACATTAAGTACGAAGGTTTCATCTTGCGTCAGCAAAGC CATCTTCAACAGGTAATCCGTTAAACATGTCAACGAGAAACGTCAATGTTGCTTTGCTCCGTGTCCATATCACTATCCCA AATCATTTCAATTATTGCACATTTTAGAATTTTAGAGCTCTTTTTATTGTTGAGTCTCATTGCTTGATTACCTGTAGATT GTTGCTCAACATCATCGACCACTTCCTGAAGACTTGGATTACCATGCAATGATAAATTTGTCTCTTGAAGCACGTGAAAA ACTTTCCAAGGTTTGTAAGGCATCTATCAAAATAGATACTTTGGTAATTACAAGTAGGGAATGGGATGGTATGAACTAAA ACACATCCTTGGATAGTTGCATCCAGACTCCAGAGGTTTACCGTATAAATTTAGTAACAACGAAAATAGAAGTATTGAGA TATGATGGGAATAAATTGTTTATGGCAAATAACCCTTCAATGTATAAGCAACTTTATACTGTAACCTATTTTGTACGACT TAACCACAATAACTTCTTTCAATGATTTCAGGTCAGGCCTCAAACCATTGGTCAGGCAACCAGAGTAGGTGGGGTGAGCC CTGCTGATATCACAGCTCTACTCATTGTGCTTGAAGCCAATCGTAGGAAAGCTCATGAACAGAGGAGGTACAAAATATTG AACGCCATTCGAGCTGATGATACCCAAGATGAGGTGTCTGAAGTTTCTTTGACTGAAACAGTTAGCTCTGGATAA
CDS sequence (LotjaGi4g1v0410800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACGGTGTCGTTTACTCTCCATCTCTGCCGAAATTTCTGCAAAACGCTCTATCCCACTCCCGCTCGTCTGAGCCT CCGTGACGTCACATTCCGGCGAAGCTTCCGCCGCCGAGTCTCCTTCTCCAGTTCCGCTTTCTCCCGACGCTTCTCTGCCA TCGCACCAGAATTGGATTGTGAAATTGGAGCACTGGATGAAAAATATGACGTGATTGTTGTTGGAGGAGGCCACGCTGGG TGTGAAGCTGCTCTTGCCTCCGCTCGTTTGGGTGCTAGAACTCTTCTTCTTACTCTCAATATTGACCGGATTGCATGGCA GCCTTGTAATCCTGCAGTTGGTGGGCTTGGGAAGTCCCAGCTTGTTCATGAGGTAGATGCGCTTGGTGGTGATATAGGAA AGGTTGCTGATAGATGTTACTTACAAAAGCGTGTACTCAATGTCTCAAGAGGTCCTGCAGTTCGTGCATTACGTGCTCAG ACTGACAAAAGGGAATATGCCTTGTTAATGAAAAGTATAGTAGAAAGCACTCCGAACCTTTCTATCCGAGAGGCTATGGT CACAGATATTTTACTGGGGAAGAATGATAATGTGGAAGGTGTTTGTACATTTTTCGGAATGAAATTCTATGCTCCATCTG TTGTTCTCACCACAGGAACCTTTATGAGTGGCAAGATTTGGGTTGGTAGAACATCTATGCCCGCAGGAAGAGCTGGCGAG TCTGCTTCACATGGATTGACTGAGAACTTGCAGCGACTTGGTTTTGAAACTGATCGGTTGAAAACTGGAACCCCAGCCCG AGTGGACATTCGCTCTGTAAATTTCTCTGAATTAGAACCTCAGCATGGAGATGAAGAGGTTACCTGGTTTAGTTTTGATC CTGATGTCCATATTGAAAGAGAGCAGATGTGCTGCTACTTAACCCGGACTACAAGTATTACTCACCAGATAATAAGAGAG AACTTACATGAAACTCCCACTTATGGAGGATGGGTTGAAGCCAAAGGACCTAGATACTGCCCTTCCATAGAAGATAAGAT TGTAAGATTCCAAGATAAAGAGTCTCATCAAGTATTTCTTGAACCGGAGGGTCGGGATGTTCCGGAGCTCTATGTGCAGG GGTTCTCAACTGGTTTGCCAGAGAGACTACAGCTACCTTTGCTAAGAACTTTGCCTGGACTTGAGAACTGTTCAATGTTG AGGCCTGCATATGCCGTGGAGTATGACTATTTACCTGCTCATCAATGTAATAGGTCTCTTATGACAAAGAAAATACAAGG ATTGTTCTTCTCTGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCGCAGGGCATTGTTTCTGGTATCAATG CTGCTAGACATGCAGATGGTAAACCACTCATTATTCTTGAGAGGGAGAGCAGTTATATTGGAACATTACTTGATGATCTA GCTACCAAGGACCTACGAGAGCCTTACCGCATGTTAACAAGCCGCTCAGAGCATCGGTTACTCTTGAGATCTGATAATGC TGATAGCCGTCTCACTCCTTTGGGTCGTGAAATTGGATTGATAGATGATAGACGCTGGAAACTGTACCAGGAGAAGCAGG CCCGGATTTCTGAGGAAAAGAAGCGGTTAAAAAGTGTCAGGATTTCAGGAGGGGATTTGGCTGCTGAAGTTACTGATCTG TCTGGTCAGCCAGTGAAAGTCTCTTCAACATTGGAAAGTCTTCTTAAGAAACCACACATACAATATAGAACTCTTGATAA CCATGGTTTTGGCAACAAAAACTTGACAAGAATGGAGAAAGAATGTGTTGAGGTCGACATTAAGTACGAAGGTTTCATCT TGCGTCAGCAAAGCCATCTTCAACAGATTGTTGCTCAACATCATCGACCACTTCCTGAAGACTTGGATTACCATGCAATG ATAAATTTGTCTCTTGAAGCACGTGAAAAACTTTCCAAGGTCAGGCCTCAAACCATTGGTCAGGCAACCAGAGTAGGTGG GGTGAGCCCTGCTGATATCACAGCTCTACTCATTGTGCTTGAAGCCAATCGTAGGAAAGCTCATGAACAGAGGAGGTACA AAATATTGAACGCCATTCGAGCTGATGATACCCAAGATGAGGTGTCTGAAGTTTCTTTGACTGAAACAGTTAGCTCTGGA TAA
Protein sequence (LotjaGi4g1v0410800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVSFTLHLCRNFCKTLYPTPARLSLRDVTFRRSFRRRVSFSSSAFSRRFSAIAPELDCEIGALDEKYDVIVVGGGHAG CEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGLGKSQLVHEVDALGGDIGKVADRCYLQKRVLNVSRGPAVRALRAQ TDKREYALLMKSIVESTPNLSIREAMVTDILLGKNDNVEGVCTFFGMKFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGE SASHGLTENLQRLGFETDRLKTGTPARVDIRSVNFSELEPQHGDEEVTWFSFDPDVHIEREQMCCYLTRTTSITHQIIRE NLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQVFLEPEGRDVPELYVQGFSTGLPERLQLPLLRTLPGLENCSML RPAYAVEYDYLPAHQCNRSLMTKKIQGLFFSGQINGTTGYEEAAAQGIVSGINAARHADGKPLIILERESSYIGTLLDDL ATKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISEEKKRLKSVRISGGDLAAEVTDL SGQPVKVSSTLESLLKKPHIQYRTLDNHGFGNKNLTRMEKECVEVDIKYEGFILRQQSHLQQIVAQHHRPLPEDLDYHAM INLSLEAREKLSKVRPQTIGQATRVGGVSPADITALLIVLEANRRKAHEQRRYKILNAIRADDTQDEVSEVSLTETVSSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 62 | 291 | 230 | 4.1E-83 | ||
| PANTHER | 66 | 686 | 621 | 0.0 | – | |
| PANTHER | 66 | 686 | 621 | 0.0 | ||
| SUPERFAMILY | 67 | 323 | 257 | 5.07E-39 | ||
| Hamap | 67 | 685 | 619 | 39.239 | ||
| TIGRFAM | 69 | 682 | 614 | 6.8E-261 | ||
| Pfam | 70 | 461 | 392 | 7.5E-153 | – | |
| PRINTS | 70 | 92 | 23 | 8.1E-6 | – | |
| PRINTS | 214 | 223 | 10 | 8.1E-6 | – | |
| ProSitePatterns | 336 | 350 | 15 | - | ||
| Gene3D | 380 | 521 | 142 | 1.1E-50 | ||
| Pfam | 464 | 677 | 214 | 8.4E-68 | ||
| Gene3D | 522 | 611 | 90 | 3.9E-17 | – | |
| SMART | 607 | 678 | 72 | 8.0E-34 | – | |
| Gene3D | 631 | 682 | 52 | 2.3E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. |
Expression pattern of LotjaGi4g1v0410800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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