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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0431200 |
| Transcript ID | LotjaGi4g1v0431200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT1G64110.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7L4G7|K7L4G7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0431200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80530781..80536879) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAACAGAAAAGCTTTCTGATATCAGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACA AACCGTTGGCAAATGGGGTGGTTGCAACTTTTCTTCAAACGCTATTACTGCTGACAACATAGAGCAGGAAATGCTCCGGC AAGTTATTGATGGCAGAGAAAGCAACGTCACTTTTGATAAATTCCCTTACTATCTCAGGCAGGCATTTTTCAACAAAATT TTCCCTTTATTTTGTTTGTTCTTTCTTTTCATGGTTCAAACTTGCATCATAATTTCCTGTGATTATGGAAAATATCATCC ATTAATGTTTTCATTGGTAAGAACTAACAAGTTTGCTGGCTTGAATAATTGTCATGTGTTGTTTCCCTTTGAAATTCTAC TTCTGATGCTAGTATGAATGTTAGAATCATTTTTTCTATTCATAAAATCATGTTCTAGTAGATGTTTATAATATTCCCCT CCATTATTTATTGATGCACATAAGCATTTTGTGTGTTATTTCCCATCAAATAAGTTCTCTTAAAATTTGTGGGATTCAAC TCTATTGAAGGCTTTTGTATTCCACCTTTTTTTTATCCCTCAGTTACATGTATGACAAACTGGCTAAGATGGTTTTTCAT ATTAACCTCACATGATCTTTTAATGGTGATGATATATGTCAAATATATTTTGTTAAGAAATTGGAACATTCATCTGATGG ATATGTGTTACTCATAACAACAATAATTGAAAAAAAAAAACTATTTACTTGATACTAATCTATGCCTTCATTGATGTGCT CGATGGAGGCTTGATTTGGCCAATCTAATAGTATGTTTGGACCAACTTTGTTTTCTTCATAATCAATTATGACACCCTGA AGCTACTCACGTAAGCTTCTCCTTAGAATTGATTTTGGCTGCAGAATCAATCAAATCGTAGAACAATTTTCAAACATGCT CTGAAGCTATAGTATATATGTACTTAATCAATTCATATATGTTCAGATATGAGTATAACACTTTCTATCCTTTGTGTTTG ATAACAGTGAGCGGACAAGGGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACA CGTAATCTTGCTCCTGCAAGCCGAACAATTCTACTCTCAGGGCCTGCAGGTTAGTTATCTTTTGTTTTCTGACAAGGGAT TGAGATATAGTTTGATGTTTCCACTTTCAATTGTCATTGTTAAACTAACTATATTTTCCTCTACTACTTTTTTATGTCTT GATAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCCTAGATTTAACTG ACTTTTCATTGAAGGTGTGTACTAGAAGTTTGGAGTCATTTGACTCAATTCTACTTTCTCCTGTTACTTATGTACTTAAT GTTTGATCTTTCGTTTGTGCAGATTCAGAGTAAATATGGTTCTTCTTCCAACAAAGAATCTGTAAGATAATCCTGGTTTA TTTTTATGGCTTTTACTTGGGTATTCTGTCATCATAGATAAACATGATGTTCTTTTTGACCTAATTTTTTGCTCCCTTTA TTCATTTTTTCCCATTCTTTCTATTGTAGTCTTTCAAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTA TTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGAACCTAAAGGTACTAATTATCAACATCATCAGAGCCATGATGAAGA GCTACATCCATAACCAACCAAAAGCTTTGTTAATCACTTTCTCGATCTTTTATACAATGTTTTGCTTGCATTGAAGAACA AGTTTAACTTCTTATGTGGAGGGAAGTTATAGTAATGATAGCTTTAATTCATGAGAAGATGCTGCAATTTTTCCCAAGCA CAATAGCTAGTATCTCTCGAACTTGTCTCTTTATCAGGACATTAACAGCCAAAATGTTAGTCTTTAACTGACAATTTGTT AAACGGGAAGGCGCATAATAATCACACCATTGACCAGGAGCTTTTTGTTGCAGGTAAAATGCACAGGCCAAGCAGTGGAA TGGACCTACAATCAATGTAAGCAGGGTAGATGAATTATGTTCTGACTGAAAAGAATTATATAACTTGCATAATAGTTTAT TCATATCATTTATAATATCTACCTTTTGATTTGCAGGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCCGAAGGAATG CTGCTTCTTCATCGAATATTAGCGGCCTTGCTTCGCAAAACAATCCTACAAATCCAGGTGATTTAAGAGATCTTGTAAAG AGATTGATGGTGATGGTTTTGGATTTGGAATTTCAATCTGCATCATTGGTTTTGTTCTTGAATATCTTTTTGGGAGAGAT CATTTTCATATTTGTTGAGAAACTGTCGATTTTATAATTCAACCTTTTGTTCTCTCTCATGATTTCTTATATCCTTTAAT TCCCCTTCAGCTCCACTGAAGCGCACAAGCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTAAT GTTACTTTCAATTTATAAAGATTTCATAACCATGTTGTTCAGAGCTAAACAAGGTGTTTGATATATTCCTCCACAAACTT ATTAATAAGAGGAAATTGTACCTGCAGGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGC TGATATGTTATTATACAGATCACAAAGGATATATAACATGTTCCAGAAAATGTTAAAGAAACTTTCTGGACACATTCTGA TTCTTGGCTCACGAGTTCTTGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAGCTTTCTATGCTCTTCCCATACAAC ATAGAAATCAGACCCCCAGAAGATGAGTCGCATCTTGTTAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACA AGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTG TAGCAGACACAATGGTTCTCAGTAACTATATTGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAA GACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGGTGAGACTGCAAACTTTTTTTTAATGAAGTTCAGAC TTGCAACCTAAATTGGATGGAAGATCTATAATTAATGTACTTACTATTTCTTGTGGAACAGTTTGTCCCATGCATTGGGT ATATTCCACAAGGGGAAATTTGGTGGTAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGAAACCTGA GGTTTGCTTTACTTTTCATGTTTGTAAATTGAGAACAACACCTAGTTGGTATTAATATGCTTTTATTTCTCTCTGTCTCT CTCATGGACATAAAAAAGCAAAAGGAGGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAA AAATGCTGAAGCAGAAAAGTCAACTTCAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGTAA GCCTTTTGTTTCTCTTCATAATTTCGATTGATTTTGAATTAAACTGATTTTGGTAAAAGTGTTTGTCGTAAAAGTGAAGT GATTTTATGTTAGGGTACTTTTATGAGAAAAATGATTCTTTGGAGTAATATTGTGAAATCCAGTTATGAAATCCCAAAGT TGATTATGTACATTGCAAAAGCTATTCCCTCTAGCTTCTCCATAGAATTGGTTTTGGATCGAGACTAAAACCAATTCTTT AAGGCAATTGACAGGCAATTATAACCATCTAAAAGTGATTCTGGTAAATGAGAGTTGATTCTAAGACTCCCAAGTCGGAG TTCACTTCATATCTTTGGGATTTAGGACACTCCTTTCTTATCAAACATTTACTGTCCATTATTGACTTGCAGGAAGTTCC TCCTGATAATGAATTTGAGAAGCGAATAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTG GTGCCTTAGAAGAGACCAAAGAATCCCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGG CTTCTAAAGCCTTGCAGAGGAATATTGCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAA GGAGGCTGGAGCTAGTTTCATCAATGTATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCC GCGCTTTGTTTACACTTGCAGGCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGG ACCAGAGTAGGGGAGCATGAAGCCATGCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACC TGGGGAGCGTATCCTTGTCCTTGCTGCAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGA GGTAGTTACCTCTACTAGTTCTTAAATTGCACTTGAATCATTTTAAACTATGTTTAGATATCTGTCGTGACCAGTGCAAC TAACGTGCACTTTAAGATTAAAAGTGAACAGATTTCTTCTTATTGGTTAGGATGAAAGCTCGTCTACGTTGCACTGAATC GATATCCAAACACATACTTATATGCTGCCAGTTTCCATTACATTTCTATATTCTTCATATATGTGTATAGTTTACTTCCT CATTGTTGTGATAAACTTTTTGTTAAATGAAGTTGATGGCATATATAGCTGCTATCTATAATATATGACTAGAGTACCCT GAAGGCCTGAAGTTGAAGAGTAGTTCTTCATTTGGGTTTATTCTGATGCAGAATTATGGTAGGACTACCATCTGTGGAGA ACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAGGAAAAGGTGGACCAGGAACTTGATTTCAAGGAACTCGCAATTATG ACGGAAGGATATACTGGAAGTGATCTGAAGGTTTTTGTTGTTTTCTGATATTGTTCCTATGCATGTGACTGTACTATGTA GTGCTATTGTAATTTTGTTATATTGTGCTGTGATTATCTCATTTATTCACTGTCATTAACTCTTCAATTTAGAATTTATG CACAACTGCTGCTTATCGGCCTGTTAGGGAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGTAACTGTGCTATATTTGT ATTTAATATCTTGTATGTATTACATATCCTGACCTGATCATGTGTTCATCTGGATGCTGTTTTTCCCAGGATAAAAAGCA GAAAACTGCCATGGAACAGAATAAAGATGTCCAAGACAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTC AAGATACAGAAAAGGAAGTTCAACAAGAAAGAGTTATTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAG AATCAGGTAACTATTTCTGTTTTATTAAAATAAAGGATTTTTATTTTGTAGGATTCATGTTTTTTCATGGATATTTTTGG ATTTACATGATGTATCTTTGAAGCTTGAACTCTTTCAGCTATGTTTGATTTGTTTGCTTATGTGGGCATAAATGATGTGT CATGAACCAACTATTCCAAAAGCGTTAGCTATTAGCTGAAGATACATAAATGATTTTAATTATATTTCTTACACACTATC TCACGCAAGAGCTTGTGGACAGTAGTGGACAATGCACAGGCTCATCAATTTTGTGCTGAAATTTAACTTAGTTGCAGTAG AAGAATGTGACAATAGAGATCGAACTCTATATCACTAATCAAGTGATATGATCACATTGGGCTTTTTCTATTGTAGTAGA ATGTCTAGTTATGTTGTGACTCTGAATTGAGTAATGCTTCATCTCAATATCCTCTTGGACTGCAGGTTGCTGCAAGCTTT GCAGCAGAGGGGGCTGGAATGGGTGAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACA ATTGTCCTACTTCCTTTGA
CDS sequence (LotjaGi4g1v0431200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAGAAAAGCTTTCTGATATCAGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACA AACCGTTGGCAAATGGGGTGGTTGCAACTTTTCTTCAAACGCTATTACTGCTGACAACATAGAGCAGGAAATGCTCCGGC AAGTTATTGATGGCAGAGAAAGCAACGTCACTTTTGATAAATTCCCTTACTATCTCAGTGAGCGGACAAGGGTTTTGCTG ACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACACGTAATCTTGCTCCTGCAAGCCGAACAAT TCTACTCTCAGGGCCTGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTC TCCTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCTTCCAACAAAGAATCTTCTTTCAAAAGA TCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTATTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGAACCTAA AGGTAAAATGCACAGGCCAAGCAGTGGAATGGACCTACAATCAATGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCC GAAGGAATGCTGCTTCTTCATCGAATATTAGCGGCCTTGCTTCGCAAAACAATCCTACAAATCCAGCTCCACTGAAGCGC ACAAGCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTTCTGGCTTTTGTGTCAAAAACCTATCC CATTGTGCTATATCTGCGGGATGCTGATATGTTATTATACAGATCACAAAGGATATATAACATGTTCCAGAAAATGTTAA AGAAACTTTCTGGACACATTCTGATTCTTGGCTCACGAGTTCTTGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAG CTTTCTATGCTCTTCCCATACAACATAGAAATCAGACCCCCAGAAGATGAGTCGCATCTTGTTAGCTGGAAGTCTCAATT GGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATT GTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATTGAAGAGATTATTGTGTCAGCAATT TCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTGTCCCATGC ATTGGGTATATTCCACAAGGGGAAATTTGGTGGTAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGA AACCTGAGCAAAAGGAGGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAA GCAGAAAAGTCAACTTCAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGAAGTTCCTCCTGA TAATGAATTTGAGAAGCGAATAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCT TAGAAGAGACCAAAGAATCCCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTA AAGCCTTGCAGAGGAATATTGCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGC TGGAGCTAGTTTCATCAATGTATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTT TGTTTACACTTGCAGGCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGA GTAGGGGAGCATGAAGCCATGCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGA GCGTATCCTTGTCCTTGCTGCAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGAATTA TGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAGGAAAAGGTGGACCAGGAACTT GATTTCAAGGAACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCTGAAGAATTTATGCACAACTGCTGCTTATCG GCCTGTTAGGGAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGAGAAAAATCAATGGTAG
Protein sequence (LotjaGi4g1v0431200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQKSFLISALSVGVGVGVGIGLASGQTVGKWGGCNFSSNAITADNIEQEMLRQVIDGRESNVTFDKFPYYLSERTRVLL TSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSSNKESSFKR STSETTLERLSDLFGSFSFFPQKEEPKGKMHRPSSGMDLQSMGAESSCNPPKLRRNAASSSNISGLASQNNPTNPAPLKR TSSWSFDEKLLIQSLYKVLAFVSKTYPIVLYLRDADMLLYRSQRIYNMFQKMLKKLSGHILILGSRVLDSGNDYEEVDEK LSMLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAI SYHLMKNKDLEYRNGKLIISSNSLSHALGIFHKGKFGGKKESSDTSKLEDQAVKPEQKEEGNVTKPAEKSEGAAPAKNAE AEKSTSVGKGDGEISVPASKAVEVPPDNEFEKRIRSEVIPANDIDVTFSDIGALEETKESLQELVMLPLRRPDLFTGGLL KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAGKVSPTIIFVDEVDSMLGQRTR VGEHEAMRKIKNEFMAHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLVAKEKVDQEL DFKELAIMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKILEKNQW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 765 | 765 | 0.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 765 | 765 | 0.0 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Phobius | 27 | 766 | 740 | - | – | |
| SUPERFAMILY | 77 | 375 | 299 | 5.32E-5 | ||
| MobiDBLite | 182 | 239 | 58 | - | – | |
| MobiDBLite | 199 | 239 | 41 | - | – | |
| MobiDBLite | 436 | 466 | 31 | - | – | |
| MobiDBLite | 436 | 494 | 59 | - | – | |
| Gene3D | 524 | 697 | 174 | 2.2E-92 | – | |
| SUPERFAMILY | 525 | 759 | 235 | 3.23E-59 | ||
| SMART | 562 | 699 | 138 | 2.0E-19 | ||
| CDD | 564 | 697 | 134 | 6.20917E-24 | – | |
| Pfam | 566 | 696 | 131 | 9.4E-38 | ||
| ProSitePatterns | 669 | 688 | 20 | - | ||
| Gene3D | 698 | 756 | 59 | 2.2E-92 | – | |
| Pfam | 720 | 754 | 35 | 1.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0431200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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