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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012100 |
| Transcript ID | LotjaGi5g1v0012100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G45000.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B; TrEMBL-Plants: tr|I3SEA8|I3SEA8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2660532..2668722) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTATTTTCCTTTCCATTTGCTCTTCTTTTCTCTCTCAATTTAAATAACTAAGAATTTGGCTCTTTCTTTTTCTATTT TCTTCCTCTTCATTTTCTTTATTTTTATTTTTATTTTTATTTTCTTTGGTCTCAATTTCACCCCTTCTTGGAAACAAAGT AACTATTTAGATTAGAATATGTAAATGCAAAGTGCAATCTCACTGTTCTATTCTTCAGATTTGTTTTCTGCAACCAACTC ACAACAATGACAGACGCTGCCGCTGAAGACGCCGCAAAACGCCGTAGTGCTGCGGCGGCGTACCAGAAGAAGCTCCTTCA ACACAAGGAATTGGAATCCCGAGTACGATCAGGTTCGTTTCTTATCCTCTCGTTACTGCAATTCAATCTCGTTTTCGTTT TTCTTGAGTATTCAGAATGTCTAGGGTTTTGTTGCGATTGTGATGATTTTGCATTTTGAATCGCGAATTTGCAGTGAGGG AGAATTTGCGAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGACTTGAAGTCTCTTCAGAGCGTTGGACAGATCATT GGCGAAGTTCTCAGGCCTCTGGACAAAGAACGCTGTAATTGTTCTATCCTTTCATATCTGGCTATTCAATATACATATTG AGATTTAAGATTGAGATTATGTGCAAGAAGTTGATGTTTCATTTTTATTATTTATGTAATCAAATTAAGTAAAATTGATT TGTTTGTATATTTGGAGAAATTAACTGTAATTGTATGAGTGTGTAAACTTTGTGTAGGAACTAGGAATAGATACTCACTA TTTAATTAGTTAGCAATACTATTTGGCACGAATTATTGGTAAACGAAACCTTTACGAGTGAAATAATTTGTCCAATCAGT AAAAAGATGGGATACAAGTTTCACTTCATGCTACAGGAGAGAGAAGGAAAAAAATCAAGTATGGCAACACGTAGGATTCG TACGTTTCGTTTCGTCACATTAACCATTTTCCTTAATTAGTTCATTTACCTGCTTGATAAGATGTCTTATTTGTTTCCTT GGTTGGTTGTTGTGAACTTGTGATTAGTGGTGAATGATTATTGTATGTTTTTGTTATCTCAGTGATTGTTAAAGCAAGCA GCGGGCCTAGGTATGTGGTTGGCTGCCGCAGTAAGGTAGACAAGGAAAAACTGACGTCCGGCACGCGAGTCGTTCTTGAT ATGACGACACTCACCATAATGCGAGCCCTTCCACGTGAAGTAATGTTTATTTGATGCATATGTTCATGTTCTTGTTGGGT TGTCTAATTTTGGTACCTTTTCTGAAAATCATCTGCTTGTTTCTTATCTGAAATTGACAGGTCGATCCAGTGGTTTACAG CATGTTGCATGAGGATCCTGGTAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAAT CAATTGAACTTCCTCTGATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGTGATTTGATTACCTTTT CACTGCACTATTTAGTCCCGGTCCTCCATTAGTGTTAAGTTATGTTGCTTTTTTTATCAACAAGTTCTCAATTCTGATCT TCCAGGGTGTTCTCCTTTATGGGCCTCCTGGTACCGGTAAAACATTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCT AACTTCTTGAAGGTCAGTTTTTGTTTCTGTTCTGAACTCAATTATGTTTTGAAGTTTCCTTTGGTATAAATATACAGTTC CATTCTTTTGTAGGTTGTCTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTG GGTATGCCCGTGATCACCAGGTAGATTCTTTTCTAAGGTTTCTTCCTTCCTGTTTATATATTCAATGAGAATGTAATTCT GAATCTCCACTTTGTTTGTTAAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTTAGTGAG GGAACAAGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTTGCTAAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTATATCTTTCTTCATAATCCCCATTTAATTTAATTTGAAAACCATAATATTTGCTTTTAGATGAGGAGCTTTATCCTA CTTTTGTATTTTGGTGGGAAGGCTAATAGATGGTGAACAATTGGTCAGCTTATAGAGTGACTGCATTTCAAAGTTTCTTA ATTTTCATGTGGTCTTTATTTTTTTCATATTGTTGAGGTATATAATTTTTGCTGATGTATAAGACTTCAAAGATGCAGTT GCAAACATGATGGTTAATGTTAGCAAATAAATTCTTGTGTGACCATTTATAATCCAAAAGATTGAGCTACTACTCCATGA CATTTTTCCTGTCTGGAATAGCGAAGTTGTAATGCTTACTTTTTTATCAGCAACGAAGTTGTAAAGTTGAGCTGAAATTT GTCAGGAATTTTCTCTTTGTCAACTTTGTTTATACATTTGAATTTCCGTGTATCTAGTACAGGTTTATTTCATTTATATG AGATTTAATTGAAATATCAACCTTTTCTGATTAATTTGTCTTCTGGATATGGTGATTGATTCTATATCTAGAAATGATTG TCAACCAAATTTTAATATTGGGTTGATAACGGAATTTCTGTCTGCATGGATGTTGTAGGTTAAAATGATAATGGCAACAA ACCGGCCTGACGTACTGGACCCTGCTCTTCTGCGTCCAGGTAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAA CAATCAAGGATGGAAATTCTGAAGATTCACGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTTAA GCTTGCTGAGGTGAGTCCAGTTTGGTTTAGTTTTGTTTGCCAATTGCTGCTTGTCTAATGTGCTTTATGTTGTTGCTAAT TGCTCAGGGATTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATT ATGTGATCCATGAAGATTTTATGAAGGTGAGTTCTTTCTTTGAGGAAGCAATTTTCTGTGTATTAATCATCTACAAAGGG ATTAACCCATCTTTATCACTCACGGGGAAATAACTTGACTTCTTGTTTCACTTCCAGGCTGTTAGAAAACTAAATGAGGC AAAGAAACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAAAAACTGCGTTAAAATTCTCAGAGCCAGG ATACGTAGGCAGTGCATTTTTTTAGGCCAGAAGGTCAGACCTTGGTAAGTAGTAGCCTTTTTGGGCTATGCTTTGTAGTT TGTACTATCTGAAAATGCAGTTAGATGAAAAAATTATCAACCAAAAATCAGATGGTGTTCAGTTGAGTTATTTTCCTAAA CAATTGCATTGGTTTTTAGTTTTGTATTGGACATATTACTGATATTTGAAATGGGTCTTAACTTTGAGTTTCTCCCCATT TAAGATTGAAGACAGCTTATTAAATCAATTTGCATAGTTTAGTGTTGTGTTTGGATCCAGTTGAGTTCAATGTGAATGAA CTTTCATTGCAATTGAAAAGTTCCGTTCACTTTTTGTCTCAAAGTGACTGCTAACGTCTATTTGCACTGGTGTCCAAACA TTGCTTTAACCATTTATGCTAGCCTCCATATTAACCATTTTTTGAAATAATAAAAATATTGTTATCTCCCGGGTTAATAG GCCAATCAACTTTAGCAGCAAAATTGCTGTGTAGTTACATATATTTTCTTCACAAAGACAAATTGATAGCATGTTTAGAT TAGCTTATTTTTTCTCAAAATCAATTCTGGCGTCCAAAAATTACTCACAGAAACTTCTCCCCATAATTGGTTTTGGCTTT AAAGTCAATTATAGAAAAATTTACAAACATGCACTGAAATGATTGATCAAGCCACTTAGATTTATCCTTTTGCACCGTGT CTCATCATCGAACTAAATAGCAGATTATTAAGTTCTCAAATGTTGATCTCTAGCTATGCTGAAACTGTGAGTTAGACATC TTCCTCCTTGTGTCGGCGTGCTTGATGCCATTTGTCATTGTTGATCTCTTGGTTAATTTGTGTTTCATTATTCTCACAAT TTTGAAGAACCAGAAAGTGCTTACCAGCTGCAAACCCAATCCCATAGCCTGTAGCAATGGAAGGAATTAAGCACATGTGT GATGTGGGTAGCCCAGAATACAAAAGGAAGGTTATTTTGAGGAAAAAACTTCCTCCTAATGAAAAGCTAACAAATCATAC CTTTATGAGAAATGGGTTGTTGGCAGATAAAGTTACATAAGTGAGACAAGGTCCAGCCATCATCCGAGCAAATGTAAATA TTGCAGCAAATAGTATCTGTGACATTGTTCCAAATTCAGCTGTTGGCTAATTTAGATATGGTTCATGCATGCTTAAAAAC TCTTGACACGTTTTGATTTATTTTATTTTATGCTTAACCTCTTATTTGCTAGTGAACATAAAACCATAAGATCCATTTCA AAATGACAATGAGTGATTACTCAACTATGTGGCTTGGGTTTAGTGCGCTGCCCCGAATGTTCTTTGATTGCATTATCGCA ACATCTTCGGCAGAGCCGGCTGAGCTCAAAAATAAAGAGAGGGAAAAAAACGAAAAAAAATGATTTAAGAAGCATTTAGC CAAAGACCTAGTTTTAGTGACAAACTTGTGTGTTATTATGGATTTATGGGGTTTCTTATTTTCTCCTGTGTTTATCCTTG TGTTACTATGGATTTGTGATCAAGTGTGTCATGTGATGTATGGCATTATGTGTGAAGCATTGTTGTATTGCTTGTAAGAT TTTCCCATTTATCTTATGTGGGTGTGGTTTTGCTGCTTTCTGGCTTTAATCGAATCACCGTTATAAAAAAAAACTATATC GCCCCTGTCCAAAAATACTATATTTTGCCCCTGAAGAAATAAGGTGTGCTTGTTGTTTCTGCAGTTATAATCCCATTAAT GCTTGAATGTTTGTGTAGGAGATGTCTGAAGGGATTACCACACGAGTTTGATTTTGAAGCACTTATTAACATGTAATATT TTTAACAATGATTCAATTTTGTATTTGATTATATTAACAACTATTTGAAATGCCAAACTAATTAAAGAACATGACAATAC ATAACTAGTACTAGTAGTATACTTATATATTCTTTCAAAAAGGAAAGTAGTATACTTATATAATATTTTCAATTGCAATG CGCTAAAATTAAATTCCTCTCACATTTATTATGACATTTTAGATGTAGAAAAATGTATGTCGTTATTTAGCTAGGTCCGG TTCCTTTAAAATGAGTGAACTCACTTTAAAATGTAAAGTATCACAACTAGTGATTGAATTATTTTATTATTTTTTTAAGT AAATAGTCACTAATAATGCTTACTTATAAATAAAAAATCACTAATAATGCTTTTTTTATCATCTAAAGTACTCACTTCAA AGGAGGTGAATTCTATTTAGCTAAATTTAACAGCCACATTATATTTGGTGTGCTCAACAAAAATGTCGGTGATATGATAT AACTAACAGATGCAGGTAATGCAGAAAGAAAATATAGTACTATGATAAGGCCTTAATTACTTACATCAGCAGTGAAATTA AGGAGGGTATCCCTGTAACCAAGCTCCTTCAGAAGCTCCCTCAAATGCAAGAATGGGCTTGACATTTCTGTTACCCATAA TGCCGCCACCATTTCTGACCCACACTACTCACAGTCACTCCACATATATGGCAAAATGTTACTACCTTGATATCAAGAAA GCAATTTGGCAGTACTAGTAGAAATTAAGGAAATTTATTGCCAAATTTTACGGGAATTGATCACCAAGGTTTTGGAGAGA AACTCATTGTTTGAGTTTTACTCAAATATATTGTGGAAATTGTTTCCAGGTCTACGGTAGCGCATCTACTATGAGTCTAT GAGTGTTAGGGCATAAAGAGCTTGATGTATGTTAATAGCTACTCAGTATGTAAATGTTTATTTATAAGTAAATTTAAGAA ACTCCAAAAATAGGATTAAACGTACTGCTATATCATATAAACTATTATTTATAAGCTAAAAATAGTTTATAAATAGATAT AAGTGCATATTAATAAAAAACAACTTATGAAAATAAATAAGGACAAAACAATTTATAGAGTCCAAACATTTACATAATGG TTTATAGCATAAACTCAAATAAGTTTTTGAAAACATTTTTTGTTTTGGTTGCAACACATGTATCCCTCACATGAGACAAT TGTGTTCTAGGCAGGAACATTCACAACATGGTGAGATTAGCTCTTCCAACAGAGGGTTTTTTTTTTCATTCACAAGACTC GACCTCCAGATTATATAAGAAAAATCAATCATTTACCATTTTTATTTCAAAAAATATAGACAAACCTTATATACAATAGC TACCACACCATACACTCACTTTTGTAGTGGTTTTTTACCATCTCAACTTTATAACGGTAAAAAACCCTCACAAGACTTTG TGGCGGTAAAATATCTCCACAAAAGTAAGTGTCTGGTGTAATTTGCTGCCGTTATCGTGGTCTATGTATAAGTGCCCTTC TTTTATATATTTAAGCAGTGCTCTGCTAGGTATTACAGATGAATTCTCTTAAATACTCTATCTGTTTTTTTTTTGTTAAT TATTTTTTTGTTACTCTATCTGTTTTTTTAATAAGGAATAGAATGCTAGACATAAACAATCTGAGTGAGAAATAATTCAA TTCAAGTGATTAAATACCTTTTGATAATAAAGACCTGCTCCAATTCCAACAATGCTCACCAAATGGTGGATGGTGTTGTC CATATTGACTCTTCCATCAAAGAGACAACACACTAAATCATAAATGAGGTAAGAAAGGCTCACTGCCAGAACTTGCATCT GCTCAGAGTTCAAACATTCCACTTTTAAAGCAAAATCTACACAATTCATAAAAATGATGACATTTCCCTCAAAATCAACC CATAACATAGAGGCTCAAGGATGATGATTGCTCATACATTTATAAGAATTATTTTAACTATATTTCTTATCAATGTGATA CTTTAACACTCTTCTCTGTCGTCTAAGACTAAGACTGGACATCTGGAGGGTGATGTTTGTAGCACTAGAAATATGACTAA ATAAGTCTATATAAAAGGTAGAGTAATCATCGTCTCTGAACTAGTTTTTGAGTTAGGGTAGGCCTAATCCGAACTCTAAG ATGCAATAAACTCAGTACCTTTGGATGGGAAGATTTTGAGGCCACAGGACAAATTGGACACTTCCAATCTTCGACAGAAA GGGAAGCCAATGTTACTGCTAAAGTTGCATGGATTGTAGAGACAATGCGGTTGGAGAAATCAAAGGTGCGTTTGGGAAAG ATTCTTCTTACTAGGACAAAGGCTGTTGTCCATGAAACAACCCCAACAACTATGATCTTTGTAATGTAGTCTTCCATTTC TCTCTATACCATGCCAGCTGCAAAAATTCTGTTTTTGTTTTCAAATGAAGTTTCTGCAAATATATTACCATAGAAGATAT ACTACACTATAAGCATGTTTAGACTGCTTCTCTTTTCATAATCAATTCAGATAAGCGAAAGCTACTTGCAGAATTGATTT TGACTTTAAAATCTAAACATACACTATAAAAATTGACAAAGAAAAGTATGCTAAGCACATATAGAGTAATAGAGAGAAAA TGAAATTTCAACGGAGTTGATAGATTGATACTTTTCTCCAGATATACAATATTTCTAATGAGGAATTCTAAGAGAAATAT GCTTGCTTACATCTCAGAGTGAAGATTTTCATACATATGTATGTGTGATAAATTTGTGAAGAAGCTAAACTTTCAAACCT TGTAACTCAATATAATTAATATCTAAGAGAATGGATAAGAAAATACCACAAATAATAGCTTGCAATGGATGTAACAACTG CGGAACTGCCACCAGAAACGGGTGAAGCTGTGCAGTGTTGACAAGAACAGGTAGGCATGGACTTTACAGCAAATTATGAC CCAACTACCATAATTATGATTATGAATTTATGATAGATGATAGATAATAATAGAAATTTTTTTGTACCTTTTAAATTTTT TATTCACCTCTCTATTTGACTTCTTCTTTTC
CDS sequence (LotjaGi5g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGACGCTGCCGCTGAAGACGCCGCAAAACGCCGTAGTGCTGCGGCGGCGTACCAGAAGAAGCTCCTTCAACACAA GGAATTGGAATCCCGAGTACGATCAGTGAGGGAGAATTTGCGAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGACT TGAAGTCTCTTCAGAGCGTTGGACAGATCATTGGCGAAGTTCTCAGGCCTCTGGACAAAGAACGCTTGATTGTTAAAGCA AGCAGCGGGCCTAGGTATGTGGTTGGCTGCCGCAGTAAGGTAGACAAGGAAAAACTGACGTCCGGCACGCGAGTCGTTCT TGATATGACGACACTCACCATAATGCGAGCCCTTCCACGTGAAGTCGATCCAGTGGTTTACAGCATGTTGCATGAGGATC CTGGTAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAATCAATTGAACTTCCTCTG ATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACCGGTAA AACATTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCTAACTTCTTGAAGGTTGTCTCAAGTGCAATAATTGATAAGT ACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATGCCCGTGATCACCAGCCCTGCATCATTTTTATGGAT GAGATCGATGCCATTGGCGGTCGTCGTTTTAGTGAGGGAACAAGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTT GCTAAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGGCCTGACGTACTGGACC CTGCTCTTCTGCGTCCAGGTAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCAAGGATGGAAATTCTG AAGATTCACGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTTAAGCTTGCTGAGGGATTTAATGG GGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATT TTATGAAGGCTGTTAGAAAACTAAATGAGGCAAAGAAACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGAC TAA
Protein sequence (LotjaGi5g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDAAAEDAAKRRSAAAAYQKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDKERLIVKA SSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYSMLHEDPGNVSYSAVGGLSDQIRELRESIELPL MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL KIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 400 | 393 | 8.2E-262 | – | |
| PANTHER | 8 | 400 | 393 | 8.2E-262 | – | |
| Coils | 19 | 60 | 42 | - | – | |
| TIGRFAM | 24 | 381 | 358 | 1.8E-136 | ||
| Gene3D | 25 | 129 | 105 | 2.1E-32 | – | |
| Pfam | 64 | 119 | 56 | 5.2E-10 | ||
| Gene3D | 130 | 310 | 181 | 6.5E-65 | – | |
| SUPERFAMILY | 137 | 385 | 249 | 3.95E-68 | ||
| CDD | 143 | 310 | 168 | 8.14673E-27 | – | |
| SMART | 173 | 312 | 140 | 2.6E-21 | ||
| Pfam | 177 | 310 | 134 | 4.3E-42 | ||
| ProSitePatterns | 280 | 298 | 19 | - | ||
| Gene3D | 311 | 381 | 71 | 1.1E-20 | – | |
| Pfam | 333 | 375 | 43 | 3.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi5g1v0012100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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