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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0019300 |
Transcript ID | LotjaGi5g1v0019300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3698868..3701853) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTGTTTGTTTTCCTATGTATCATTTTATTTTTTTTATACATGGGAAAATCGGAAAATCCTATGTACTATCATTTTAT AAAGGATGAGAATTAGAATTAGGGACTAAACATAGTAAAGCACAGTCATTGCAATTTGCATTCCATTTAAATTTCATTTC ATGTAAAACAAGAAAACAAATAAAACAAACTACCTTACCCTTTCTCCTTCGACGTGTTGACTAGGAGGATCTATCGGGTT CCTCAGCGTTTGTTCCTGCAGGTTCGTCATTTCTTCCTTTCCCCTTTTTTCTCAATCTGTTGATCTCTTCTATGCGTGTT TGGTTTGCTCAATCGTTATTTGATGCTGAATCATCTGAGTCTATAAACCCTGATTCGATCCAGGTACAAAGTTGCAATTT GTGTAATTCGATCAAGCAATGAAATTTGATTTAGGGTTTTGGTTTTTTCTGTTTTTCTGGGGGGTTTTGTTCCTTGTTGA TTTTGTTAGATTCTCATGGAATTGGGATTTTACTATTTTGATCCTAAGATTTTTATATCCTTTACAAGCATATGTAGCTT CATGTTCTGTGCCCTGTGCCTAAAATATGTGTGTTTGAATTTCTGTTGAACTCGACGCTACAAAATCTTATTTCGCCATT TGTGTGTTGGGATCTGTGAAGGTGCAAAGGAGAAACAAACAAACATATAGCTGTATGGATTTGGTTATGTGTGATTAACA ATATCCTTTAATCCCACTAGGGAGGTATGGTAGAAGTGTTTGATTGTCTGCACAGGTTACTTAGCTTTATTTGATAAGGG TTTTGCTTGCTTTGAAACAATAGAAGAATTTTGATTCAGCTATATCACATGTATATGTATATATATGTATGTGTTTGAAT CATTGTATGGCATGATAAAATGTTTTTGTACCGAAATACATATTTTTGAGTTTTTGTGTACAAGGGCATGTCTTATACAA TTTGAAGATTGGGTTTTATACAGATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCC GGCAACAATAATAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATG CGGTCATCTTTTCTGCTGGCCTTGCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGG CACTGGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCC GGTGTTAATATCCCGCACCGTCCTGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCA TGGGTTTGGATTCACGGGTGGTTTGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAG CATTTGGTGGTTTTATACCATCCTTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCT GGTTTCCCATATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACA AGATTATTATCTCAAGAGGCTGCTGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAGTTTGAATAGA GTTGAGACTGCTAAGTGAATCAAACTTGAGCTCTTATCAACCTTCATGTGTGCTTTTTAATTTCTATTTTTTGTAACTAT GGAAGTTGTTCATATCATACTCTCTTATTACTCTAGTAGTTCTGTTGTCTGCAGTTAGTTTGTGGATCTTGATTTGCATC CATGTGCTAAATTTCATTTGGAGACCATGAAAGTACATACAGATATAGATGTTAGTTTGATGGTCATTTTATATACCTAT GAGGTAGTTATTGACCTTCTGTACCAAATGGCCTTCTGTATATCATCAGGGTTATGCTTGTTAGTTCATTTTCTGTTTTA GATGTGGATTTTGTATGCATTGATAAAACATATTGCTTATTGAGATGTGTTTATACTGTTTTACATAACTAAAGTAACAC ATAATATCACAACCCCATTTCCATACCCCCTATTTATCTCTCTATTACTTCTTTTTTTCAATACAGTGGTCATGAACTCT TTATATCCCCTGAAAAGTTTGTGTACAGGATTCATGTGCAAGAATCATGCCTATATATAACAAATATGGTTCTTGTGCTC TGCTGTATTTTGGAATTCTTTTATTTGTTTATAAGGGTGTGGATACAGAAGTTAGTCTGCAATCTGGTAAAAAATTTGTG ATTGCTTCCTTAAGCTGAATTTTGGATGTCTTTGTCTCTGAACGGGTCATTGTAATATCGAGAGAGATAGACACAAAACT TCAACATGAGGGAACAATAGAGAGTTTTAACATGAGAGGATCCTGATCCCTCTTCAATAGAACCAATCTCCCAACTGTGA TTGACTTTCAATTCTTGTTTTTGTGGCATTCAAATTCCTTGGTGAGTTTTGGTTCTTTACTTTGATCGATTGTAATGGAT GAAACCTATGCATGAAATATATGCGTGGTGCTAGTGACATTTTGGAGCTTACCAGCTGGGGACTTGAGTTATCAACTTAT TCTCCTTTCATGCAGTTTGGTTGTTCTGAGACGAGATGAGAGCTTGATGATGCAATGAGTTGTGTATTGGTGTTAGTCAT TCATAGTAAAGTTAATGTCGTTTTATGAGGTAGTTAGGCGAGCAGCAGCTATAGAATTTGAATACTAATTTAATTGTTAT TATTAAAGTGCTTCTTTTGTTGTGTACTTGACTACTTATTTTGAAATTCTTCAAATAAAAAAACTTGAGATGGTGTTCAA ATTTGTATTTTTTTTATTTTAAAATAAAAAAATTGGTACCATCATTTTATATTAGGAAAGGATAAAAAAATAACATTTAT GGTGAATTTATTTTAAATTTAAATAA
CDS sequence (LotjaGi5g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCCGGCAACAATAATAGTGATGCTGG CAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATGCGGTCATCTTTTCTGCTGGCCTT GCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCACTGGTTGAAGAGGAGAAGTTG GTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCCGGTGTTAATATCCCGCACCGTCC TGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCATGGGTTTGGATTCACGGGTGGTT TGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAGCATTTGGTGGTTTTATACCATCC TTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCTGGTTTCCCATATGGGTTTTCTAA TTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACAAGATTATTATCTCAAGAGGCTGC TGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAG
Protein sequence (LotjaGi5g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGFGESTSRSPPSPSYAGNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKL VPLYGRGKTSSDPRSRSIPGVNIPHRPAGQRPETAPPPEPNPFAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPS LFNFQLHGFHGATMYGGAPGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 219 | 219 | 1.6E-104 | – | |
Phobius | 1 | 208 | 208 | - | – | |
PANTHER | 1 | 219 | 219 | 1.6E-104 | – | |
MobiDBLite | 1 | 21 | 21 | - | – | |
Gene3D | 19 | 91 | 73 | 1.9E-18 | ||
SUPERFAMILY | 28 | 84 | 57 | 1.75E-17 | – | |
CDD | 29 | 73 | 45 | 8.67859E-30 | – | |
Pfam | 29 | 76 | 48 | 8.4E-10 | – | |
SMART | 31 | 71 | 41 | 3.4E-8 | ||
ProSiteProfiles | 31 | 72 | 42 | 13.507 | ||
ProSitePatterns | 46 | 55 | 10 | - | ||
MobiDBLite | 85 | 120 | 36 | - | – | |
TMHMM | 208 | 227 | 20 | - | – | |
Phobius | 209 | 227 | 19 | - | – | |
Phobius | 228 | 228 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0019300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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