Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0019300 |
| Transcript ID | LotjaGi5g1v0019300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3698868..3701853) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTGTTTGTTTTCCTATGTATCATTTTATTTTTTTTATACATGGGAAAATCGGAAAATCCTATGTACTATCATTTTAT AAAGGATGAGAATTAGAATTAGGGACTAAACATAGTAAAGCACAGTCATTGCAATTTGCATTCCATTTAAATTTCATTTC ATGTAAAACAAGAAAACAAATAAAACAAACTACCTTACCCTTTCTCCTTCGACGTGTTGACTAGGAGGATCTATCGGGTT CCTCAGCGTTTGTTCCTGCAGGTTCGTCATTTCTTCCTTTCCCCTTTTTTCTCAATCTGTTGATCTCTTCTATGCGTGTT TGGTTTGCTCAATCGTTATTTGATGCTGAATCATCTGAGTCTATAAACCCTGATTCGATCCAGGTACAAAGTTGCAATTT GTGTAATTCGATCAAGCAATGAAATTTGATTTAGGGTTTTGGTTTTTTCTGTTTTTCTGGGGGGTTTTGTTCCTTGTTGA TTTTGTTAGATTCTCATGGAATTGGGATTTTACTATTTTGATCCTAAGATTTTTATATCCTTTACAAGCATATGTAGCTT CATGTTCTGTGCCCTGTGCCTAAAATATGTGTGTTTGAATTTCTGTTGAACTCGACGCTACAAAATCTTATTTCGCCATT TGTGTGTTGGGATCTGTGAAGGTGCAAAGGAGAAACAAACAAACATATAGCTGTATGGATTTGGTTATGTGTGATTAACA ATATCCTTTAATCCCACTAGGGAGGTATGGTAGAAGTGTTTGATTGTCTGCACAGGTTACTTAGCTTTATTTGATAAGGG TTTTGCTTGCTTTGAAACAATAGAAGAATTTTGATTCAGCTATATCACATGTATATGTATATATATGTATGTGTTTGAAT CATTGTATGGCATGATAAAATGTTTTTGTACCGAAATACATATTTTTGAGTTTTTGTGTACAAGGGCATGTCTTATACAA TTTGAAGATTGGGTTTTATACAGATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCC GGCAACAATAATAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATG CGGTCATCTTTTCTGCTGGCCTTGCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGG CACTGGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCC GGTGTTAATATCCCGCACCGTCCTGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCA TGGGTTTGGATTCACGGGTGGTTTGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAG CATTTGGTGGTTTTATACCATCCTTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCT GGTTTCCCATATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACA AGATTATTATCTCAAGAGGCTGCTGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAGTTTGAATAGA GTTGAGACTGCTAAGTGAATCAAACTTGAGCTCTTATCAACCTTCATGTGTGCTTTTTAATTTCTATTTTTTGTAACTAT GGAAGTTGTTCATATCATACTCTCTTATTACTCTAGTAGTTCTGTTGTCTGCAGTTAGTTTGTGGATCTTGATTTGCATC CATGTGCTAAATTTCATTTGGAGACCATGAAAGTACATACAGATATAGATGTTAGTTTGATGGTCATTTTATATACCTAT GAGGTAGTTATTGACCTTCTGTACCAAATGGCCTTCTGTATATCATCAGGGTTATGCTTGTTAGTTCATTTTCTGTTTTA GATGTGGATTTTGTATGCATTGATAAAACATATTGCTTATTGAGATGTGTTTATACTGTTTTACATAACTAAAGTAACAC ATAATATCACAACCCCATTTCCATACCCCCTATTTATCTCTCTATTACTTCTTTTTTTCAATACAGTGGTCATGAACTCT TTATATCCCCTGAAAAGTTTGTGTACAGGATTCATGTGCAAGAATCATGCCTATATATAACAAATATGGTTCTTGTGCTC TGCTGTATTTTGGAATTCTTTTATTTGTTTATAAGGGTGTGGATACAGAAGTTAGTCTGCAATCTGGTAAAAAATTTGTG ATTGCTTCCTTAAGCTGAATTTTGGATGTCTTTGTCTCTGAACGGGTCATTGTAATATCGAGAGAGATAGACACAAAACT TCAACATGAGGGAACAATAGAGAGTTTTAACATGAGAGGATCCTGATCCCTCTTCAATAGAACCAATCTCCCAACTGTGA TTGACTTTCAATTCTTGTTTTTGTGGCATTCAAATTCCTTGGTGAGTTTTGGTTCTTTACTTTGATCGATTGTAATGGAT GAAACCTATGCATGAAATATATGCGTGGTGCTAGTGACATTTTGGAGCTTACCAGCTGGGGACTTGAGTTATCAACTTAT TCTCCTTTCATGCAGTTTGGTTGTTCTGAGACGAGATGAGAGCTTGATGATGCAATGAGTTGTGTATTGGTGTTAGTCAT TCATAGTAAAGTTAATGTCGTTTTATGAGGTAGTTAGGCGAGCAGCAGCTATAGAATTTGAATACTAATTTAATTGTTAT TATTAAAGTGCTTCTTTTGTTGTGTACTTGACTACTTATTTTGAAATTCTTCAAATAAAAAAACTTGAGATGGTGTTCAA ATTTGTATTTTTTTTATTTTAAAATAAAAAAATTGGTACCATCATTTTATATTAGGAAAGGATAAAAAAATAACATTTAT GGTGAATTTATTTTAAATTTAAATAA
CDS sequence (LotjaGi5g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCCGGCAACAATAATAGTGATGCTGG CAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATGCGGTCATCTTTTCTGCTGGCCTT GCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCACTGGTTGAAGAGGAGAAGTTG GTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCCGGTGTTAATATCCCGCACCGTCC TGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCATGGGTTTGGATTCACGGGTGGTT TGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAGCATTTGGTGGTTTTATACCATCC TTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCTGGTTTCCCATATGGGTTTTCTAA TTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACAAGATTATTATCTCAAGAGGCTGC TGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAG
Protein sequence (LotjaGi5g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGFGESTSRSPPSPSYAGNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKL VPLYGRGKTSSDPRSRSIPGVNIPHRPAGQRPETAPPPEPNPFAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPS LFNFQLHGFHGATMYGGAPGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 1.6E-104 | – | |
| Phobius | 1 | 208 | 208 | - | – | |
| PANTHER | 1 | 219 | 219 | 1.6E-104 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Gene3D | 19 | 91 | 73 | 1.9E-18 | ||
| SUPERFAMILY | 28 | 84 | 57 | 1.75E-17 | – | |
| CDD | 29 | 73 | 45 | 8.67859E-30 | – | |
| Pfam | 29 | 76 | 48 | 8.4E-10 | – | |
| SMART | 31 | 71 | 41 | 3.4E-8 | ||
| ProSiteProfiles | 31 | 72 | 42 | 13.507 | ||
| ProSitePatterns | 46 | 55 | 10 | - | ||
| MobiDBLite | 85 | 120 | 36 | - | – | |
| TMHMM | 208 | 227 | 20 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 228 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0019300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…