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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0165600 |
| Transcript ID | LotjaGi5g1v0165600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3T1V6|I3T1V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0165600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42302906..42305045) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCAAAAACCCTTTGTGTGAAAACTGATGCAGGTTTCTGATGAAGTTGAACAATGAAACCGTATCAATCGAACTCAAG AATGGTACCATTGTTCATGGCACCATTACAGGTTTTCCCTTCTTCCTTTTCCTCTTCTCACCACTGTTATTATTGTATAT GCTCTTCACATCGTTAAACCCTAATATGCTCTTCACTTCGTTAAACCCTAACCTAAGTACCCTTCATGTTCAAACACTGT ACGTACTTGAGTTTAATTACGTATCACTTGCAAAATGTTAGTTCAGTTGCTGGTGATTAAGATCCATTTTTAACTACCTT GTGATCAAGATTTCTTTGTTTGATATCTGTAACCCTTTCTAAGATGGAAATTCACCGTGGCAGGTTACTGGTTACAAGAT TACTAAAATGATTTGGAGTTCTCTTTTGCTAATTTAATCCGGGCGCATCTTCATGTTTGGATTAATAATATTTGAAATAT ATGTATTCTCTCTGGACCTGTACTTGCTCTGAGAAAGGGTTCTATTTATGGTTTCTCTTTGATATCCTGATCAAGATTTT CTCTTTGGAGTTTCCGTTTCTTATATGGAAAGAGTTTAGGCATCTTTTAAGCACTAGATTGCTCCCCCCCGCGCTTTGCC GCTTTCCCTTCGAGTTCCACATTTGGCTCATTACATAGCTTGTTTTTTGACAGATCTCATTACATAGTTATTAAACCTTT GGATGTAGTTGACCCTCTCTCATGTTATACTGTACCTGTTTTCTATTCAATGAATATTCTTTTTCTATGTTCATAATGAC GACGATGATGTTCGATTTTAAATAGTAGTCAACAGTTACCCTTTGAACTTTAGATTTGGAAGAGTAGGAAGGTGTTTGTT ACCGATGACAGGATTTGGATCCTCTCAGTTGTAAAAAATCTTGACAATGTCAAGTTTCGTTATCTCACCATTGATTATTG TGTGTTTAATAATTAAAGAAATAAATGAGAATTAAGTCAATGGCGAGATGATGAAACTTGACATGATCAAGTTTGTCTAC AATTGAGAGGTTCCGATTCCCTTTTACATGTTGGCAAGATACGTCTCAAACCTCTGTAGTTTTGTTGCTTTGTGCTCTGC AAATGTAATGCATTTATGTTATAGGGAAGTAACCAGCCCTCCTAGTCTCTGGATTCAAGGACTGTGCTGAAGACTCTGAA CATTCACAATGCCCATACAGCATCTCGATCATTTGAAAACTTACTCTCGTATTTCTTCTTTATGCCTTTTCTATCCTGTC ATACTTTAAAACCCTCATATCAGCACATACATATTACCAAATCTAGGCCAATCTTTTCAGAAACATACCAAGTCACCCGA TTTCATCTATTGCTTCTGATTAAGCCTCATGCGATCCCACTGCAGAATTTTCTTATCAACAGCCACCTGGATTTAGATTG ACTTTTAGATAAATATAAAACTCAGAAGTCATATATTACATCTGTTACCTTTGCTTGTATCAAATATTGTGACTGATTCT AAGGCTCAGGCCAGGTGTCACCAGCTTCATGAATTGGAGTGAATTGTTTTATGTAGGCTTATTAGGGTCGTGAATCTTAA TTAGGCATGTCAATATAAATTAAGCACCAAGGAGTTTCCTTGTCAATCATTAGCGAACACATATTAGCAGATATTGCCTT GTGTGAAAATTAAGAGCTTGCCACTTAGTGTCCCTATGTAGTATACTTTTGGGATGGGATAAAAAGTTTTTAAGCTTTAG TTATACTGGTCCTGACTTGTTGCAATGCTACAGGTGTTGATATCAGTATGAATACACATTTGAAGGCAGTAAAACTAACA CTGAAAGGGAAAAACCCAGTGACTCTGGATCATCTTAGTGTGAGAGGTACCAACATTCGTTATTATATCCTTCCTGACAG CTTGAATCTTGAGACTTTGCTGGTTGAAGAGGCACCTAGAGTCAAGCCTAAGAAGCCAACTGCTGGTACTGTACATTGTA TTTTGACTGTGACTGCAATATTTGTTTTCAGGTTGGCTGTTTTTTTTATTTCTAAAGTTTTAATTTTATTCTCAGGGAAG CCTTTGGGGCGTGGGCGAGGCCGGGGTCGTGGACGTGGTCGTGGTCGTGGTGGTCGTTGA
CDS sequence (LotjaGi5g1v0165600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTGAACAATGAAACCGTATCAATCGAACTCAAGAATGGTACCATTGTTCATGGCACCATTACAGGTGTTGATAT CAGTATGAATACACATTTGAAGGCAGTAAAACTAACACTGAAAGGGAAAAACCCAGTGACTCTGGATCATCTTAGTGTGA GAGGTACCAACATTCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTGCTGGTTGAAGAGGCACCTAGAGTC AAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGGCGTGGGCGAGGCCGGGGTCGTGGACGTGGTCGTGGTCGTGGTGG TCGTTGA
Protein sequence (LotjaGi5g1v0165600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGTNIRYYILPDSLNLETLLVEEAPRV KPKKPTAGKPLGRGRGRGRGRGRGRGGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 78 | 78 | 4.0E-30 | – | |
| PANTHER | 1 | 106 | 106 | 1.4E-67 | – | |
| SMART | 1 | 63 | 63 | 1.3E-12 | ||
| PANTHER | 1 | 106 | 106 | 1.4E-67 | ||
| CDD | 1 | 86 | 86 | 5.84193E-52 | ||
| Pfam | 2 | 62 | 61 | 1.1E-16 | ||
| SUPERFAMILY | 2 | 106 | 105 | 6.8E-23 | ||
| MobiDBLite | 77 | 108 | 32 | - | – | |
| MobiDBLite | 86 | 108 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi5g1v0165600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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