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PTHR23338

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj0g3v0130529.1
– Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1|
Domains
10
Lj0g3v0215509.1
– PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like isoform 1 [Solanum lycopersicum] gi|460368779|ref|XP_004230242.1|
Domains
10
Lj3g3v2988250.1
– PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] gi|502139973|ref|XP_004503997.1|
Domains
14
Lj4g3v2785700.1
– Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula] gi|357519697|ref|XP_003630137.1|
Domains
10
Lj5g3v0975430.1
– Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1|
Domains
10
Lj5g3v1631030.1
– PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like [Cicer arietinum] gi|502112559|ref|XP_004494370.1|
Domains
11
LotjaGi1g1v0728800.1
– Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800
Domains
12
LotjaGi1g1v0728800.2
– Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800
Domains
12
LotjaGi1g1v0765900.1
– Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765900
Domains
12
LotjaGi3g1v0474900.1
– Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900
Domains
17
LotjaGi4g1v0405100.1
– Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3T1G1|I3T1G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0405100
Domains
12
LotjaGi5g1v0165600.1
– Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3T1V6|I3T1V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0165600
Domains
12
LotjaGi5g1v0165600.2
– Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3T1V6|I3T1V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0165600
Domains
12
LotjaGi5g1v0251400.1
– Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251400
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14