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LotjaGi5g1v0190800.4

Overview

Field Value
Gene ID LotjaGi5g1v0190800
Transcript ID LotjaGi5g1v0190800.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pre-mRNA-splicing factor SLU7; TAIR: AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor; Swiss-Prot: sp|Q9SHY8|SLU7A_ARATH Pre-mRNA-splicing factor SLU7-A; TrEMBL-Plants: tr|A0A0A0LFN9|A0A0A0LFN9_CUCSA Uncharacterized protein; Found in the gene: LotjaGi5g1v0190800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:48333286..48339710) extracted from Lotus japonicus Gifu genome v1.2.

TGCATTGCATGTGAAGACACTACATGATGCTTAAGAAAATAAATGTGCTTATAAACACCTGCTTTGATGTTGCAGCAACC TTTAAATCTAGGGAGGACCACAGAAAACAGATTGAATTGGAAGAGGCACGTAAAGCTGGGCTTGCACCAGCTGAGGTAGA TGAAGATGGGAAAGAGATTAACCCTCATATCCCCCAATATATGTCTTCTGCTCCATGGTATCTGAATGCTGAGAAACCTG TAAGCTTCACAACTTTCTACTACCTTCCTTCTTCTGTTCCTCTAGCCAGCCCCTATTTGTTATGACAGTAAAGTTCTGTA TTCTGAGCCGCTTTTTCTATTTTTTCTTGGTAGAGTCTAAAACATCAAAGGAAATGGAAATCTGATCCGAATTATACGAA GTCTTGGTACGACAGAGGAGCAAAAACATTTCAGGCTGACAATTACAGGAAGGGAGCATGTGAAAAGTAAGTGGGCTTTG TTGTTTTTGTCAAGATTTTCAAATCCTTGTATGTCTCTGTTTATCTGTTTTGGGAACGGTGTCTTGCTACATGAAGATTT GAACTGTAAAACGAGTACAGGTTGGTTTTCTTTAGTTGCAATGATAAACATGGATTAGATATGGAGTTATTATGCTGGTA AACTCATGTAATGATAATATTCAATTGTTGAACTTATCCTATTAATTATGTCCCTTAGTACATAGTTTTGTGATGCTATT TTAATCAGATCAAAATGCTGGGCCAGGCATGATTAGTTTTATTTATTCTATTATAAATTCTTATACGAGAAATCATTTTA TTTTTTCTTGAGGTTTACATTGATGAATTAAAGCCGACTTAGTTACTCATAAGTCATATTGTCATAACCATAGACTTGTT GTTTAGGTGTCTTGTGCAAATTAAAATAACAGATGTATAGCCTCATTTGTTATTGCCAAACATCCTGCTGTGCTATTTAG TTTAGCTCTCTCTTATGCAAAGTCAATCAAATTCTTTCCTGGACTCGTTTCTTCCGACTCAAATGTGCTTATGAAGATGG ATGTGTGATAGAACTGGACGAATTTAAGGTAAAGATGCACTTTCTATTGGTAGCATGATATGAATACAGGATATCCTTCT CCAGCTATCTGAGAAAGCTGAGCTCTCCCTCCCAATTTTCACTCAATGACCCAAAATTCATCTCCATTATTTGCCTCCTG GTATTTATATCTTCTGATTTCTCTCTTTACCTATCTCTAAATGATGATTGGGGATCTGCAAAAAATGTGTTGCTTATGAA GTTCACTTTTAAAGCTAGCATCTATCATACCATTTCATGTCTGCGAGAAATCTAGTCATAATATTTTACGTAGTTAGTGT TAGAAATATAATCACATGGTAGGTGGACATGTGCAGTATCCACGGTTCAAGCCCAAGTGGGTTCTTGCGCTGCGTGAGGG GGCATGTTAGAAATATAACCACTCATGTACCCTTACCCAATAGCTTAAGCTTTTGGGATTTTGGTTCATGACAATTGGGT TATGTAGAAATGCTCACCTTTTTTAGCTCAGGATATTGTGTAGCGTTTCTGATATACTCGTATTGTGATCTTGTCATCAT GAGAATCTAGTTATCTTTATCTCGTTTCTGTGATCAAGAAGTGGGTGTTGTAAATTTTAGGTATCAATCACAGAATGGTT AAATCAAAGAAATGGTTCTTAAAGAAAAGCAAGCTTGCCTATATTTAGGGGTTTTTTTTTCCTTGCACTCCTTTTCTTCT TTGCTCTTTTTTTTTGTTATGTGGGCGGGGTTGCTTTTCTGATATCAATTGATAAAATTTAAAGATATGATAGTTTTATT TCAAGCGGCGTGAATAATTTTATTTAATATTTTAAGTTAAACTTGTTTTTTCTTGAATTTTTATTTGACTTATTTCGTTA GTTGTTAAGATTGGCATTATTTTTCACCCATTAATTTTTGGCTTATATTTGTTCTGAAGCTGTGGTGCAATGACACATAA TACAAAATCATGCGTGGAGAGGCCTCGGAAGCTTGGAGCAAAATGGACCAACATGCATATCGCTCCTGATGAAAAGATAG AAACATTTGAACTTGATTATGATGGCAAGAGAGATCGATGGAATGGTTATGATCCAGCCACCTATGCTCGTGTCATTGAA AGATATGAGGCAAGGGAAGAGGCTCGGAGGAAGTATTTAAAAGAACAGCAATTAAAGAAACTGGAGAAGAAAAACAAAAA GCAAAGAGGGGAAAATGAGTCTAGTGATGATGATGAATATGAAGATGAAGATGCTCATGCTCTAAAGGTTGATGAAGCCA AGGTTGATGAGAGCAAACAGGCGGACTTTGCCAAGGTTGAAAAGCGTGTTAGAACAACAGGAGGTGGTAGTACAGGAACT GTAAGGTGTGCTGCTTTACTGTTTGTATTTGTATTCCTATTTGTTTGTTATGTATGTAGCACATCAGAATCAGTGTCTCA CGCAAATAGCTTCACCCAAAACAATGTCGTATTATGTGATTATTATTCTGATTCTATTTGTTTGCTTCAGAAACTTGCGT ATCCGAGAGGACACTGCAAAATACCTTCTGAATCTTGATGTCAATTCTCCTTATTATGATCCAAAAACCCATTCTATGCG AGAGGATCCCCTTCCTGATGCTGATCCTAATGAGAAGTTCTATGGAGTGAGTATCATGGAAGATTTTATTTGGTTGTTAG ATCTGTAAAACATTGGAAATGCTTTACTTAATGTGCTTACTTTTGTCCTGACAGGGAGACAACCAGTATAGAATGAGTGG ACAAGCTTTGGAGTTCAAGCAACTTAACATTCATGCCTGGGAAGCATTTGAGAAAGGCCAGGATGTCCACATACAAGCTG CACCTTCCCAAGCTGAATTACTATATAAGAATTTTAAGATAATGAAAGAGAAGTTGAAGTCACAAACAAAAGATGCCATA ATACAGAAGTATGGAAATGCAGCAGCCCAAGAAGAGCTTCCAAAGGAGCTTCTTTTGGGGCAAACTGAGAGACAAGTCGA ATATGATCGCGCTGGCAGAATTATAAAAGGCCTGGTATTATTCAATATGAAAATCATGTCATTTTTGTTTTCTTTATATG GATGAAACATATTTAATTTAATTTTTATGCTTTATGGTTTTGTTTCCAGGCCTTTACTTACCATTAGGTTTTAGTATGAT ATTCCATTTATTAGGCTTATCAGTGAGAAAATATAGGAGAGTCTGATATGATGTCTTTTAGATTTTGGTGATCTTGCATG TGATCATTTGACATGTTTTTCTTTGATTTCTGAATTTAGAACGTACAATGCTATGGGAGGATTAAATAAGTTACTAGAAT CATATTCCTTAGTTTGAATGCATTTTAAACTACAACTGATCAATTGTAGTTTTCTCTGTGCAGTACCCATGTTTGAATGA AGTGGTGTATACTTTTTTTCTTTTTTGAAATTGTGCAAATTTTCTACTGCGATAAAGTTGTAGACTAGTTTTCAACTTTG TCACTTAATCATCATAATGCTTCAAATGGTGGAAACTTTTTCTCTTCTGGTGATTAATATTTTGGTTTTATACTTGCAGG AGGCATCCCTTCCAAAAAGCAAGTATGAAGAGGATGTGTACATTAATAATCACACAAGCATATGGGGTTCATGGTGGAAT GATCATCAATGGGGATACAAATGTTGCAAGCAAACTATACGGAACAGTTACTGCACTGGCGCAGCAGGAATTGAGGCTGC TGAGGCAGCAGCGGATTTAATGAAGGCAAACATTGATCGTAAAGTAGCATCTGAAGGCAAGTCTTCCTATTTAACCATTT TTAGAATATTCTTTGGGCTGTCATTCTTTATTTGAAATTGCTTCTATATGATTTATATGGCATTCTGTTTATTTTATCTT CGTCAATGCTGTTGTTTTCCATTAACTTTGTTTGGACACACCTTGATTTTTTTTTTTGAAAATAAACATGAATATTATTA TGGGCCAACCGGCCTAGAAGCAATTACATCCAAGTTTACCAAGCCAATAACGGCATCAGGAACTTCTTCCACCCATACAG AATTCGCATAAGTGGAAGCGTTCTTAGCCAAAAAGTCAGCAACCACATTACCAGAGCGTCTAACAAAGGACAAAGAAAAT AAATCAAACAGCGGAACATAAGAACGACAATCTCTAATAATATTATCCAAATAGGAATGACCCACCACCTCCTTCTGCCA CCACTGAAATAACTGGAGACAATCTGATAGAAACCAGAAATTGTAGATGTATTATTGAAGAACCCTAATCCCTAATTTGG GAATTAGAGCAAGTTACATGGAAGAGATGCCAAACACTCTTCCCAAACCTAGAGAGAAACCCAATGTTCTCCCTAAACCC CAATTCCAAACTGAATACAAAAGATACCCCTAATGTTCACTAACCTCTCTTATTTATAGGCAACATGCCTTATAACTGTC TAACTAACTTCCTAACAACTAACAATTCATAACTAACCCTGCATTCCTATCACAATCTGTCTCTAAACAAACTCGCCTGA AGCCAAGCTCAGTCGCCAGCTGCATCGTCCACCTCAAACCACACACCTCCGCCAAAAGAGATGAAAGAATGGGCACCGGG TAGGAGGTAGCAGCTGCCATGATCTCGCCTTGATGGTTGCGAGCCACCATACCCAGCCCCGCCACCTTACCGTCCACAAA TGAAGCATCAAAATTCAGCTTAACCACTCTTTCTTGAGGCCTTCGCCACACAGATATGCTCGTCGATGTCCCCTCACGGG CCTTCGAAGGAAGCACCCTTGCCATCCCCATCACGCGGTCAATGACCTCTGCAACCACCAGCCTACCATTACGAAACAAG ACCCTATTCCTCACCTCCCAAATCTGATAAATCAGTGTTTGTGCCATGGCTACCACCTCGGGCTGTTGCTCTTGCAGAAT CGACGTCCACATCGCTTGGAAAGAAGGCACGTTCTCGACTCTAAGGGAGAGGGGAGAAGCGTACCAAATCGCCATTGCCG CCGGACACCGCATGAAGATGTGTTCCGTAGACTCGCTATCATGTCCACAAAGAACGCAGTCTGGGTCTGTGTCTACATGT CGCCGGAAAAGTTGTTCACGAACCGGAAGGAAGCCTCTGATAGCTCTCCAAGTTGTCTCCTTGCATCTAGGAAGTGCGCC GGTAGCCCAAAACTTTCGCCACAAATTTGGAAGCAAAGTCAACCTCATCGAGGAAGATGACGAAGCCACCTCCAAGGCTA GTAAGCCACAAATGTAATTGTACCCTGTTTTTGATGTATATTGACCATCAGAAGTGTAAGGCCAAGATAAAACATCTTCA CCCCCGTGCAAATCCAAAGGAATGGCTAGTATATGCGATGCTGTTGCTGGATGGAAAATTTCCTCAATCCATTCTCGGTT CCAACGTTTTGGACCTTCCACAATCATGTCTGAAACACGAGCAATGCCAAGAGCTTCCGCCACATCAATACGATAGGTGA GCAGGACTCCATTTGGCAGCCACTTATCTGTCCATGCCTGGACCTTTGAGCCATCTCCTATGTGCCATAAGCCACCTCTT TCAAAGATCCAACTAGTTTTAAGGATACTAGACCAAGCGTAGCTAGGGCGATAACCCTTCCGGGCTCCCCAAATCGACCC TCTCGGAAAATAAACCCCCTTGAAAACCTTTGCCAGTAAGGTATCCGGATGAGGACACACCTTGAATTTGTTATGACATA TGTTTGTTGACTATTTATGTGCTTTCCATATTGTATGATCTAATCTGATATAAGAATAATAACAACTGCTTGTATCATCA ATTTCTCATTGCATGTGTTTCATTTCAACAAAATGCAGATACTCCTGCTCCAGCAGAGGAAAAAAGGCTTGCTACTTGGG GAACTGATGTACCTGATGATCTGGTCCTGGACCAGAAAAAACTTGATGAGGCCCTTAGAAAGGTAACTTTTTATTATTAT TTTTTTTCCAATTTTCTTTTTCCTTTCGAATATTCATTTCTTATTTAGATATCATGTGAAATTGTGAATCACTACATTGC CTAATTTGGAGCTTTACAGTTCGAAGATATGTCGGATATGAATAATCATTTGGTTATCTTAATTTGTTAAACAAACCATT TCTGTTTGATCAGGAGGATGAAAGGAAGAGGGAGGAAAAAGATGAAAGGAAACGCAAGTATAATGTTAGATGGAATGATG AGGTAGTGTTTTTGTTTAGCAATTTTGTTCACCTGTAATGTAATTCATAACACATCAATTATGTTGGGAAGATCAAGATT GTGTTGACACTATAATGCTTTTTGCAGGTCACTCCTGAAGAGATGGAGGCATATCGCGTGAAAAAGATTCATCATGATGA TCCCATGAAAGATTTTCTGCATTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0190800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCTTAAGAAAATAAATGTGCTTATAAACACCTGCTTTGATGTTGCAGCAACCTTTAAATCTAGGGAGGACCACAG AAAACAGATTGAATTGGAAGAGGCACGTAAAGCTGGGCTTGCACCAGCTGAGGTAGATGAAGATGGGAAAGAGATTAACC CTCATATCCCCCAATATATGTCTTCTGCTCCATGGTATCTGAATGCTGAGAAACCTAGTCTAAAACATCAAAGGAAATGG AAATCTGATCCGAATTATACGAAGTCTTGGTACGACAGAGGAGCAAAAACATTTCAGGCTGACAATTACAGGAAGGGAGC ATGTGAAAACTGTGGTGCAATGACACATAATACAAAATCATGCGTGGAGAGGCCTCGGAAGCTTGGAGCAAAATGGACCA ACATGCATATCGCTCCTGATGAAAAGATAGAAACATTTGAACTTGATTATGATGGCAAGAGAGATCGATGGAATGGTTAT GATCCAGCCACCTATGCTCGTGTCATTGAAAGATATGAGGCAAGGGAAGAGGCTCGGAGGAAGTATTTAAAAGAACAGCA ATTAAAGAAACTGGAGAAGAAAAACAAAAAGCAAAGAGGGGAAAATGAGTCTAGTGATGATGATGAATATGAAGATGAAG ATGCTCATGCTCTAAAGGTTGATGAAGCCAAGGTTGATGAGAGCAAACAGGCGGACTTTGCCAAGGTTGAAAAGCGTGTT AGAACAACAGGAGGTGGTAGTACAGGAACTGTAAGAAACTTGCGTATCCGAGAGGACACTGCAAAATACCTTCTGAATCT TGATGTCAATTCTCCTTATTATGATCCAAAAACCCATTCTATGCGAGAGGATCCCCTTCCTGATGCTGATCCTAATGAGA AGTTCTATGGAGGAGACAACCAGTATAGAATGAGTGGACAAGCTTTGGAGTTCAAGCAACTTAACATTCATGCCTGGGAA GCATTTGAGAAAGGCCAGGATGTCCACATACAAGCTGCACCTTCCCAAGCTGAATTACTATATAAGAATTTTAAGATAAT GAAAGAGAAGTTGAAGTCACAAACAAAAGATGCCATAATACAGAAGTATGGAAATGCAGCAGCCCAAGAAGAGCTTCCAA AGGAGCTTCTTTTGGGGCAAACTGAGAGACAAGTCGAATATGATCGCGCTGGCAGAATTATAAAAGGCCTGGAGGCATCC CTTCCAAAAAGCAAGTATGAAGAGGATGTGTACATTAATAATCACACAAGCATATGGGGTTCATGGTGGAATGATCATCA ATGGGGATACAAATGTTGCAAGCAAACTATACGGAACAGTTACTGCACTGGCGCAGCAGGAATTGAGGCTGCTGAGGCAG CAGCGGATTTAATGAAGGCAAACATTGATCGTAAAGTAGCATCTGAAGGCAAGTCTTCCTATTTAACCATTTTTAGAATA CTCCTGCTCCAGCAGAGGAAAAAAGGCTTGCTACTTGGGGAACTGATGTACCTGATGATCTGGTCCTGGACCAGAAAAAA CTTGATGAGGCCCTTAGAAAGGAGGATGAAAGGAAGAGGGAGGAAAAAGATGAAAGGAAACGCAAGTATAATGTTAGATG GAATGATGAGGTCACTCCTGAAGAGATGGAGGCATATCGCGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0190800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMLKKINVLINTCFDVAATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKPSLKHQRKW KSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKWTNMHIAPDEKIETFELDYDGKRDRWNGY DPATYARVIERYEAREEARRKYLKEQQLKKLEKKNKKQRGENESSDDDEYEDEDAHALKVDEAKVDESKQADFAKVEKRV RTTGGGSTGTVRNLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFKQLNIHAWE AFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEELPKELLLGQTERQVEYDRAGRIIKGLEAS LPKSKYEEDVYINNHTSIWGSWWNDHQWGYKCCKQTIRNSYCTGAAGIEAAEAAADLMKANIDRKVASEGKSSYLTIFRI LLLQQRKKGLLLGELMYLMIWSWTRKNLMRPLERRMKGRGRKKMKGNASIMLDGMMRSLLKRWRHIA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12942
19 471 453 1.7E-204
IPR039974
Pfam
PF11708
148 421 274 2.6E-94
IPR021715
Coils
Coil
174 208 35 - –
MobiDBLite
mobidb-lite
191 215 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000386
Molecular function Second spliceosomal transesterification activity Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure.
Subterm of
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0030628
Molecular function Pre-mRNA 3'-splice site binding Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0190800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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